Wall clock time and date at job start Tue Mar 31 2020 20:13:34 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50698 * 1 3 3 N 1.33694 * 126.27456 * 2 1 4 4 C 1.30612 * 108.99690 * 179.89088 * 3 2 1 5 5 C 1.50707 * 125.42520 * 180.15187 * 4 3 2 6 6 C 1.52995 * 109.46748 * 300.26747 * 5 4 3 7 7 C 1.52999 * 109.47172 * 60.26801 * 5 4 3 8 8 O 1.33664 * 109.15302 * 0.38023 * 4 3 2 9 9 C 1.35342 * 107.68669 * 359.76673 * 8 4 3 10 10 C 1.46716 * 126.64761 * 180.02562 * 9 8 4 11 11 O 1.21686 * 120.00244 * 179.97438 * 10 9 8 12 12 N 1.34784 * 119.99847 * 359.95883 * 10 9 8 13 13 C 1.46497 * 119.99939 * 179.97438 * 12 10 9 14 14 H 1.09003 * 109.46326 * 35.00185 * 13 12 10 15 15 C 1.53037 * 109.46034 * 275.03081 * 13 12 10 16 16 C 1.53168 * 109.32589 * 301.35881 * 15 13 12 17 17 N 1.46921 * 108.76725 * 305.35381 * 16 15 13 18 18 C 1.36935 * 120.63498 * 233.62891 * 17 16 15 19 19 H 1.07997 * 120.00423 * 151.80509 * 18 17 16 20 20 C 1.38813 * 120.00224 * 331.81549 * 18 17 16 21 21 N 1.31631 * 119.99410 * 343.08390 * 20 18 17 22 22 Si 1.86800 * 120.00673 * 163.08533 * 20 18 17 23 23 H 1.48503 * 109.46800 * 59.99763 * 22 20 18 24 24 H 1.48497 * 109.47076 * 179.97438 * 22 20 18 25 25 H 1.48499 * 109.46785 * 299.99968 * 22 20 18 26 26 C 1.46928 * 118.73921 * 53.61295 * 17 16 15 27 27 C 1.53042 * 109.46205 * 154.97577 * 13 12 10 28 28 H 1.08992 * 109.49956 * 178.60755 * 27 13 12 29 29 C 1.53004 * 109.49268 * 298.67385 * 27 13 12 30 30 H 1.09003 * 109.46881 * 269.68880 * 1 2 3 31 31 H 1.08997 * 109.47557 * 149.68639 * 1 2 3 32 32 H 1.09006 * 109.47373 * 29.68324 * 1 2 3 33 33 H 1.08994 * 109.47269 * 180.26967 * 5 4 3 34 34 H 1.09003 * 109.47298 * 60.00120 * 6 5 4 35 35 H 1.09001 * 109.47172 * 180.02562 * 6 5 4 36 36 H 1.09005 * 109.47696 * 300.00056 * 6 5 4 37 37 H 1.08996 * 109.47373 * 59.99905 * 7 5 4 38 38 H 1.09001 * 109.46882 * 180.02562 * 7 5 4 39 39 H 1.09003 * 109.47063 * 299.99996 * 7 5 4 40 40 H 0.97003 * 119.99608 * 359.97438 * 12 10 9 41 41 H 1.09003 * 109.50113 * 61.29822 * 15 13 12 42 42 H 1.08999 * 109.50039 * 181.39510 * 15 13 12 43 43 H 1.09001 * 109.58797 * 185.57359 * 16 15 13 44 44 H 1.08991 * 109.59286 * 65.14053 * 16 15 13 45 45 H 0.96995 * 119.99736 * 180.02562 * 21 20 18 46 46 H 1.08999 * 109.58628 * 186.60386 * 26 17 16 47 47 H 1.09000 * 109.58668 * 66.17849 * 26 17 16 48 48 H 1.08993 * 109.47560 * 60.00199 * 29 27 13 49 49 H 1.09003 * 109.46798 * 179.97438 * 29 27 13 50 50 H 1.09001 * 109.47119 * 299.99272 * 29 27 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 7 2.2980 1.0778 0.0000 4 6 3.5452 0.6899 0.0024 5 6 4.7440 1.6031 0.0064 6 6 4.7120 2.4922 -1.2383 7 6 4.7134 2.4795 1.2602 8 8 3.5889 -0.6460 -0.0045 9 6 2.3136 -1.0992 -0.0060 10 6 1.8826 -2.5016 -0.0124 11 8 0.6965 -2.7736 -0.0127 12 7 2.8004 -3.4886 -0.0182 13 6 2.3700 -4.8890 -0.0240 14 1 1.4578 -4.9861 -0.6126 15 6 2.1014 -5.3457 1.4117 16 6 3.3754 -5.1754 2.2446 17 7 4.4737 -5.8900 1.5800 18 6 5.2171 -6.8162 2.2616 19 1 5.6799 -7.6344 1.7299 20 6 5.3757 -6.7036 3.6360 21 7 5.1111 -5.5632 4.2377 22 14 5.9645 -8.1704 4.6317 23 1 7.3047 -8.5902 4.1491 24 1 6.0510 -7.7929 6.0653 25 1 5.0066 -9.2937 4.4719 26 6 4.7591 -5.5921 0.1698 27 6 3.4692 -5.7577 -0.6399 28 1 3.1599 -6.8026 -0.6219 29 6 3.7138 -5.3222 -2.0861 30 1 -0.3633 -0.0056 1.0277 31 1 -0.3634 -0.8871 -0.5187 32 1 -0.3634 0.8928 -0.5089 33 1 5.6558 1.0058 0.0029 34 1 3.8002 3.0896 -1.2347 35 1 5.5793 3.1524 -1.2356 36 1 4.7338 1.8679 -2.1315 37 1 4.7361 1.8461 2.1469 38 1 5.5802 3.1403 1.2628 39 1 3.8016 3.0768 1.2637 40 1 3.7459 -3.2717 -0.0186 41 1 1.3023 -4.7420 1.8421 42 1 1.8050 -6.3946 1.4104 43 1 3.2193 -5.5905 3.2404 44 1 3.6225 -4.1167 2.3224 45 1 5.2222 -5.4844 5.1981 46 1 5.5159 -6.2821 -0.2035 47 1 5.1190 -4.5673 0.0784 48 1 4.0242 -4.2776 -2.1035 49 1 4.4971 -5.9409 -2.5243 50 1 2.7949 -5.4379 -2.6608 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000943498791.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 20:13:34 Heat of formation + Delta-G solvation = -11.672081 kcal Electronic energy + Delta-G solvation = -30445.714175 eV Core-core repulsion = 26474.587396 eV Total energy + Delta-G solvation = -3971.126779 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 335.200 amu Computer time = 1.31 seconds Orbital eigenvalues (eV) -43.47226 -39.84269 -37.71606 -36.08449 -35.24587 -34.26360 -32.58822 -31.27827 -30.97738 -30.06567 -27.79179 -27.50113 -25.91412 -25.32706 -24.30919 -22.48582 -21.70414 -21.16997 -20.69883 -20.45915 -18.61655 -18.15350 -16.95334 -16.76574 -16.33944 -15.50304 -14.93415 -14.78087 -14.73852 -14.54303 -14.03438 -13.97862 -13.78362 -13.45187 -13.34442 -13.24472 -13.09901 -12.94633 -12.58453 -12.49572 -12.37172 -12.15766 -11.99274 -11.61495 -11.52777 -11.41595 -11.37923 -11.11238 -10.97971 -10.85935 -10.80040 -10.71343 -10.40928 -10.26392 -10.10071 -9.92332 -9.78393 -9.47705 -8.94689 -8.59036 -8.48681 -6.71336 -5.82375 -3.26067 0.84661 2.35357 2.37462 3.22124 3.34976 3.36168 3.42295 3.43212 3.77561 4.45792 4.51318 4.63662 4.70074 4.78076 4.96499 5.12609 5.27386 5.32447 5.32738 5.35612 5.41328 5.45685 5.51299 5.56234 5.56494 5.63170 5.65347 5.80707 5.83213 5.88189 5.91311 5.93532 5.98789 6.04248 6.11235 6.23415 6.26744 6.32280 6.40395 6.56724 6.61907 6.70503 6.85740 6.89376 7.32592 7.48356 7.63142 7.73652 7.75857 8.25896 8.40677 9.16775 9.79885 10.36138 11.25704 Molecular weight = 335.20amu Principal moments of inertia in cm(-1) A = 0.012078 B = 0.003403 C = 0.003070 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2317.651274 B = 8225.557840 C = 9119.060061 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.078 4.078 2 C 0.074 3.926 3 N -0.484 5.484 4 C 0.221 3.779 5 C -0.001 4.001 6 C -0.143 4.143 7 C -0.144 4.144 8 O -0.184 6.184 9 C -0.111 4.111 10 C 0.607 3.393 11 O -0.523 6.523 12 N -0.696 5.696 13 C 0.160 3.840 14 H 0.077 0.923 15 C -0.155 4.155 16 C 0.174 3.826 17 N -0.591 5.591 18 C -0.256 4.256 19 H 0.065 0.935 20 C 0.005 3.995 21 N -0.901 5.901 22 Si 0.903 3.097 23 H -0.283 1.283 24 H -0.291 1.291 25 H -0.283 1.283 26 C 0.151 3.849 27 C -0.119 4.119 28 H 0.084 0.916 29 C -0.142 4.142 30 H 0.080 0.920 31 H 0.095 0.905 32 H 0.073 0.927 33 H 0.102 0.898 34 H 0.070 0.930 35 H 0.073 0.927 36 H 0.059 0.941 37 H 0.062 0.938 38 H 0.073 0.927 39 H 0.069 0.931 40 H 0.405 0.595 41 H 0.056 0.944 42 H 0.067 0.933 43 H 0.087 0.913 44 H 0.017 0.983 45 H 0.254 0.746 46 H 0.058 0.942 47 H 0.013 0.987 48 H 0.049 0.951 49 H 0.055 0.945 50 H 0.049 0.951 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.982 13.412 -11.278 17.775 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.135 4.135 2 C -0.050 4.050 3 N -0.214 5.214 4 C 0.015 3.985 5 C -0.020 4.020 6 C -0.200 4.200 7 C -0.202 4.202 8 O -0.071 6.071 9 C -0.166 4.166 10 C 0.392 3.608 11 O -0.402 6.402 12 N -0.346 5.346 13 C 0.056 3.944 14 H 0.095 0.905 15 C -0.195 4.195 16 C 0.048 3.952 17 N -0.313 5.313 18 C -0.386 4.386 19 H 0.083 0.917 20 C -0.194 4.194 21 N -0.545 5.545 22 Si 0.732 3.268 23 H -0.209 1.209 24 H -0.216 1.216 25 H -0.210 1.210 26 C 0.024 3.976 27 C -0.140 4.140 28 H 0.103 0.897 29 C -0.200 4.200 30 H 0.099 0.901 31 H 0.113 0.887 32 H 0.092 0.908 33 H 0.120 0.880 34 H 0.089 0.911 35 H 0.092 0.908 36 H 0.078 0.922 37 H 0.081 0.919 38 H 0.092 0.908 39 H 0.088 0.912 40 H 0.242 0.758 41 H 0.074 0.926 42 H 0.085 0.915 43 H 0.105 0.895 44 H 0.035 0.965 45 H 0.064 0.936 46 H 0.076 0.924 47 H 0.030 0.970 48 H 0.068 0.932 49 H 0.074 0.926 50 H 0.068 0.932 Dipole moment (debyes) X Y Z Total from point charges -3.897 13.795 -11.080 18.118 hybrid contribution 1.074 -1.329 0.708 1.850 sum -2.823 12.466 -10.373 16.461 Atomic orbital electron populations 1.20352 0.85405 1.04051 1.03666 1.22019 0.98241 0.86418 0.98333 1.70237 1.00258 1.31011 1.19884 1.26510 0.95610 0.79259 0.97100 1.19764 0.90607 0.93167 0.98468 1.21839 1.03412 0.99300 0.95470 1.21849 1.03363 0.99447 0.95546 1.84482 1.29866 1.23624 1.69103 1.23058 0.81193 0.96544 1.15836 1.16293 0.85923 0.81261 0.77341 1.90818 1.15728 1.81854 1.51828 1.46057 1.09865 1.06400 1.72292 1.21009 0.97178 0.78450 0.97766 0.90482 1.22582 1.00907 1.00758 0.95265 1.20718 0.83586 0.94786 0.96087 1.44052 1.34364 1.46595 1.06290 1.19127 1.27189 1.02036 0.90241 0.91695 1.25048 0.99969 0.96434 0.97959 1.70029 1.52426 1.22670 1.09394 0.86371 0.78701 0.82497 0.79188 1.20882 1.21644 1.20986 1.20915 0.93135 0.97408 0.86117 1.21962 0.97965 0.99685 0.94367 0.89724 1.21774 1.01105 1.01004 0.96149 0.90117 0.88678 0.90776 0.88026 0.91135 0.90827 0.92210 0.91914 0.90806 0.91156 0.75800 0.92566 0.91477 0.89523 0.96495 0.93563 0.92365 0.96967 0.93185 0.92612 0.93178 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.08 -0.98 9.87 36.00 0.36 -0.62 16 2 C 0.07 1.12 7.16 -82.47 -0.59 0.52 16 3 N -0.48 -6.93 11.26 -7.07 -0.08 -7.01 16 4 C 0.22 2.93 6.82 -12.79 -0.09 2.84 16 5 C 0.00 -0.01 3.39 -91.77 -0.31 -0.32 16 6 C -0.14 -1.06 9.17 37.16 0.34 -0.72 16 7 C -0.14 -1.20 9.18 37.16 0.34 -0.86 16 8 O -0.18 -2.81 10.57 4.43 0.05 -2.77 16 9 C -0.11 -1.79 7.18 -36.84 -0.26 -2.06 16 10 C 0.61 10.41 7.75 -12.83 -0.10 10.31 16 11 O -0.52 -9.68 14.46 5.20 0.08 -9.61 16 12 N -0.70 -11.65 3.59 -55.06 -0.20 -11.84 16 13 C 0.16 2.73 2.21 -67.89 -0.15 2.58 16 14 H 0.08 1.29 7.58 -51.93 -0.39 0.90 16 15 C -0.16 -3.04 5.77 -26.63 -0.15 -3.20 16 16 C 0.17 4.11 5.05 -3.73 -0.02 4.09 16 17 N -0.59 -14.22 2.99 -172.34 -0.52 -14.74 16 18 C -0.26 -6.86 9.58 -15.06 -0.14 -7.00 16 19 H 0.07 1.70 7.88 -52.49 -0.41 1.29 16 20 C 0.00 0.13 4.92 -17.42 -0.09 0.05 16 21 N -0.90 -25.88 11.20 55.49 0.62 -25.26 16 22 Si 0.90 21.44 29.59 -169.99 -5.03 16.41 16 23 H -0.28 -6.62 7.11 56.52 0.40 -6.22 16 24 H -0.29 -6.98 7.11 56.52 0.40 -6.58 16 25 H -0.28 -6.68 7.11 56.52 0.40 -6.28 16 26 C 0.15 2.96 5.50 -3.71 -0.02 2.94 16 27 C -0.12 -1.94 2.67 -90.50 -0.24 -2.18 16 28 H 0.08 1.41 8.14 -51.93 -0.42 0.99 16 29 C -0.14 -1.89 9.05 37.16 0.34 -1.55 16 30 H 0.08 0.97 8.14 -51.93 -0.42 0.55 16 31 H 0.09 1.26 6.47 -51.93 -0.34 0.92 16 32 H 0.07 0.79 8.14 -51.93 -0.42 0.37 16 33 H 0.10 0.83 8.14 -51.93 -0.42 0.41 16 34 H 0.07 0.57 8.14 -51.93 -0.42 0.15 16 35 H 0.07 0.39 8.14 -51.93 -0.42 -0.03 16 36 H 0.06 0.46 8.14 -51.93 -0.42 0.04 16 37 H 0.06 0.59 8.14 -51.93 -0.42 0.16 16 38 H 0.07 0.44 8.14 -51.93 -0.42 0.02 16 39 H 0.07 0.62 8.14 -51.93 -0.42 0.20 16 40 H 0.41 6.78 6.53 -40.82 -0.27 6.52 16 41 H 0.06 1.11 8.14 -51.93 -0.42 0.68 16 42 H 0.07 1.31 8.14 -51.93 -0.42 0.88 16 43 H 0.09 2.33 6.06 -51.93 -0.31 2.02 16 44 H 0.02 0.43 7.74 -51.93 -0.40 0.02 16 45 H 0.25 7.12 8.31 -40.82 -0.34 6.78 16 46 H 0.06 1.13 7.93 -51.93 -0.41 0.72 16 47 H 0.01 0.24 6.64 -51.93 -0.34 -0.10 16 48 H 0.05 0.66 7.54 -51.93 -0.39 0.26 16 49 H 0.05 0.68 8.14 -51.93 -0.42 0.26 16 50 H 0.05 0.62 8.14 -51.93 -0.42 0.20 16 LS Contribution 396.92 15.07 5.98 5.98 Total: -1.00 -30.66 396.92 -8.22 -38.88 By element: Atomic # 1 Polarization: 13.45 SS G_CDS: -8.33 Total: 5.13 kcal Atomic # 6 Polarization: 5.62 SS G_CDS: -0.79 Total: 4.82 kcal Atomic # 7 Polarization: -58.68 SS G_CDS: -0.17 Total: -58.85 kcal Atomic # 8 Polarization: -12.49 SS G_CDS: 0.12 Total: -12.37 kcal Atomic # 14 Polarization: 21.44 SS G_CDS: -5.03 Total: 16.41 kcal Total LS contribution 5.98 Total: 5.98 kcal Total: -30.66 -8.22 -38.88 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000943498791.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 27.208 kcal (2) G-P(sol) polarization free energy of solvation -30.661 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -3.453 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.219 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.880 kcal (6) G-S(sol) free energy of system = (1) + (5) -11.672 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.31 seconds