Wall clock time and date at job start Tue Mar 31 2020 20:13:33 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50698 * 1 3 3 N 1.33694 * 126.27456 * 2 1 4 4 C 1.30612 * 108.99690 * 179.89088 * 3 2 1 5 5 C 1.50707 * 125.42520 * 180.15187 * 4 3 2 6 6 C 1.52995 * 109.46748 * 300.26747 * 5 4 3 7 7 C 1.52999 * 109.47172 * 60.26801 * 5 4 3 8 8 O 1.33664 * 109.15302 * 0.38023 * 4 3 2 9 9 C 1.35342 * 107.68669 * 359.76673 * 8 4 3 10 10 C 1.46716 * 126.64761 * 180.02562 * 9 8 4 11 11 O 1.21686 * 120.00244 * 179.97438 * 10 9 8 12 12 N 1.34784 * 119.99847 * 359.95883 * 10 9 8 13 13 C 1.46497 * 119.99939 * 179.97438 * 12 10 9 14 14 H 1.09003 * 109.46326 * 35.00185 * 13 12 10 15 15 C 1.53037 * 109.46034 * 275.03081 * 13 12 10 16 16 C 1.53168 * 109.32589 * 301.35881 * 15 13 12 17 17 N 1.46921 * 108.76725 * 305.35381 * 16 15 13 18 18 C 1.36935 * 120.63498 * 233.62891 * 17 16 15 19 19 H 1.07997 * 120.00423 * 151.80509 * 18 17 16 20 20 C 1.38813 * 120.00224 * 331.81549 * 18 17 16 21 21 N 1.31631 * 119.99410 * 343.08390 * 20 18 17 22 22 Si 1.86800 * 120.00673 * 163.08533 * 20 18 17 23 23 H 1.48503 * 109.46800 * 59.99763 * 22 20 18 24 24 H 1.48497 * 109.47076 * 179.97438 * 22 20 18 25 25 H 1.48499 * 109.46785 * 299.99968 * 22 20 18 26 26 C 1.46928 * 118.73921 * 53.61295 * 17 16 15 27 27 C 1.53042 * 109.46205 * 154.97577 * 13 12 10 28 28 H 1.08992 * 109.49956 * 178.60755 * 27 13 12 29 29 C 1.53004 * 109.49268 * 298.67385 * 27 13 12 30 30 H 1.09003 * 109.46881 * 269.68880 * 1 2 3 31 31 H 1.08997 * 109.47557 * 149.68639 * 1 2 3 32 32 H 1.09006 * 109.47373 * 29.68324 * 1 2 3 33 33 H 1.08994 * 109.47269 * 180.26967 * 5 4 3 34 34 H 1.09003 * 109.47298 * 60.00120 * 6 5 4 35 35 H 1.09001 * 109.47172 * 180.02562 * 6 5 4 36 36 H 1.09005 * 109.47696 * 300.00056 * 6 5 4 37 37 H 1.08996 * 109.47373 * 59.99905 * 7 5 4 38 38 H 1.09001 * 109.46882 * 180.02562 * 7 5 4 39 39 H 1.09003 * 109.47063 * 299.99996 * 7 5 4 40 40 H 0.97003 * 119.99608 * 359.97438 * 12 10 9 41 41 H 1.09003 * 109.50113 * 61.29822 * 15 13 12 42 42 H 1.08999 * 109.50039 * 181.39510 * 15 13 12 43 43 H 1.09001 * 109.58797 * 185.57359 * 16 15 13 44 44 H 1.08991 * 109.59286 * 65.14053 * 16 15 13 45 45 H 0.96995 * 119.99736 * 180.02562 * 21 20 18 46 46 H 1.08999 * 109.58628 * 186.60386 * 26 17 16 47 47 H 1.09000 * 109.58668 * 66.17849 * 26 17 16 48 48 H 1.08993 * 109.47560 * 60.00199 * 29 27 13 49 49 H 1.09003 * 109.46798 * 179.97438 * 29 27 13 50 50 H 1.09001 * 109.47119 * 299.99272 * 29 27 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 7 2.2980 1.0778 0.0000 4 6 3.5452 0.6899 0.0024 5 6 4.7440 1.6031 0.0064 6 6 4.7120 2.4922 -1.2383 7 6 4.7134 2.4795 1.2602 8 8 3.5889 -0.6460 -0.0045 9 6 2.3136 -1.0992 -0.0060 10 6 1.8826 -2.5016 -0.0124 11 8 0.6965 -2.7736 -0.0127 12 7 2.8004 -3.4886 -0.0182 13 6 2.3700 -4.8890 -0.0240 14 1 1.4578 -4.9861 -0.6126 15 6 2.1014 -5.3457 1.4117 16 6 3.3754 -5.1754 2.2446 17 7 4.4737 -5.8900 1.5800 18 6 5.2171 -6.8162 2.2616 19 1 5.6799 -7.6344 1.7299 20 6 5.3757 -6.7036 3.6360 21 7 5.1111 -5.5632 4.2377 22 14 5.9645 -8.1704 4.6317 23 1 7.3047 -8.5902 4.1491 24 1 6.0510 -7.7929 6.0653 25 1 5.0066 -9.2937 4.4719 26 6 4.7591 -5.5921 0.1698 27 6 3.4692 -5.7577 -0.6399 28 1 3.1599 -6.8026 -0.6219 29 6 3.7138 -5.3222 -2.0861 30 1 -0.3633 -0.0056 1.0277 31 1 -0.3634 -0.8871 -0.5187 32 1 -0.3634 0.8928 -0.5089 33 1 5.6558 1.0058 0.0029 34 1 3.8002 3.0896 -1.2347 35 1 5.5793 3.1524 -1.2356 36 1 4.7338 1.8679 -2.1315 37 1 4.7361 1.8461 2.1469 38 1 5.5802 3.1403 1.2628 39 1 3.8016 3.0768 1.2637 40 1 3.7459 -3.2717 -0.0186 41 1 1.3023 -4.7420 1.8421 42 1 1.8050 -6.3946 1.4104 43 1 3.2193 -5.5905 3.2404 44 1 3.6225 -4.1167 2.3224 45 1 5.2222 -5.4844 5.1981 46 1 5.5159 -6.2821 -0.2035 47 1 5.1190 -4.5673 0.0784 48 1 4.0242 -4.2776 -2.1035 49 1 4.4971 -5.9409 -2.5243 50 1 2.7949 -5.4379 -2.6608 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000943498791.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 20:13:33 Heat of formation + Delta-G solvation = -31.203916 kcal Electronic energy + Delta-G solvation = -30446.561139 eV Core-core repulsion = 26474.587396 eV Total energy + Delta-G solvation = -3971.973743 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 335.200 amu Computer time = 1.19 seconds Orbital eigenvalues (eV) -44.59587 -41.25335 -39.22082 -36.94379 -36.38086 -35.91875 -34.05719 -32.93232 -32.28634 -31.62293 -28.95524 -28.12322 -27.42988 -27.03120 -25.39515 -23.98489 -23.11682 -22.72878 -21.88512 -21.42177 -20.15414 -19.43826 -18.66095 -18.10257 -17.31927 -16.96405 -16.77081 -16.18506 -15.92954 -15.58636 -15.51632 -15.42195 -15.11576 -14.79483 -14.63096 -14.34083 -14.28522 -14.11515 -14.06456 -13.58614 -13.32979 -13.18806 -13.09537 -12.97007 -12.73740 -12.72626 -12.55759 -12.39844 -12.33912 -12.24807 -12.20953 -11.99853 -11.98105 -11.82341 -11.71441 -11.53080 -11.26478 -11.12850 -10.54622 -10.26928 -9.84060 -8.68936 -7.88436 -5.34442 -0.32967 1.24145 1.27332 1.46212 1.48987 1.55220 1.92410 2.09293 2.50280 2.75489 3.26939 3.52696 3.58070 3.65010 3.75565 3.91152 4.01604 4.02234 4.07246 4.10499 4.36423 4.39157 4.41884 4.56278 4.61391 4.65675 4.72607 4.75417 4.76216 4.77728 4.80638 4.88494 4.91438 4.93739 4.98275 5.04111 5.06087 5.12095 5.20439 5.27169 5.28857 5.36229 5.39130 5.43017 5.50683 5.62763 5.70218 6.24112 6.36946 6.49947 6.91512 7.12770 7.83847 8.35600 9.17399 Molecular weight = 335.20amu Principal moments of inertia in cm(-1) A = 0.012078 B = 0.003403 C = 0.003070 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2317.651274 B = 8225.557840 C = 9119.060061 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.075 4.075 2 C 0.076 3.924 3 N -0.497 5.497 4 C 0.229 3.771 5 C -0.005 4.005 6 C -0.137 4.137 7 C -0.141 4.141 8 O -0.196 6.196 9 C -0.142 4.142 10 C 0.608 3.392 11 O -0.541 6.541 12 N -0.694 5.694 13 C 0.166 3.834 14 H 0.089 0.911 15 C -0.144 4.144 16 C 0.188 3.812 17 N -0.606 5.606 18 C -0.263 4.263 19 H 0.070 0.930 20 C -0.049 4.049 21 N -0.935 5.935 22 Si 0.965 3.035 23 H -0.273 1.273 24 H -0.297 1.297 25 H -0.279 1.279 26 C 0.149 3.851 27 C -0.106 4.106 28 H 0.086 0.914 29 C -0.134 4.134 30 H 0.085 0.915 31 H 0.088 0.912 32 H 0.094 0.906 33 H 0.114 0.886 34 H 0.062 0.938 35 H 0.101 0.899 36 H 0.056 0.944 37 H 0.047 0.953 38 H 0.103 0.897 39 H 0.063 0.937 40 H 0.405 0.595 41 H 0.051 0.949 42 H 0.069 0.931 43 H 0.048 0.952 44 H -0.007 1.007 45 H 0.248 0.752 46 H 0.061 0.939 47 H 0.014 0.986 48 H 0.050 0.950 49 H 0.070 0.930 50 H 0.064 0.936 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.434 13.928 -13.075 19.258 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.132 4.132 2 C -0.048 4.048 3 N -0.226 5.226 4 C 0.024 3.976 5 C -0.024 4.024 6 C -0.194 4.194 7 C -0.198 4.198 8 O -0.083 6.083 9 C -0.197 4.197 10 C 0.394 3.606 11 O -0.422 6.422 12 N -0.344 5.344 13 C 0.062 3.938 14 H 0.107 0.893 15 C -0.184 4.184 16 C 0.062 3.938 17 N -0.330 5.330 18 C -0.393 4.393 19 H 0.088 0.912 20 C -0.244 4.244 21 N -0.581 5.581 22 Si 0.794 3.206 23 H -0.199 1.199 24 H -0.224 1.224 25 H -0.205 1.205 26 C 0.023 3.977 27 C -0.126 4.126 28 H 0.104 0.896 29 C -0.192 4.192 30 H 0.104 0.896 31 H 0.106 0.894 32 H 0.113 0.887 33 H 0.133 0.867 34 H 0.081 0.919 35 H 0.120 0.880 36 H 0.075 0.925 37 H 0.066 0.934 38 H 0.121 0.879 39 H 0.082 0.918 40 H 0.241 0.759 41 H 0.070 0.930 42 H 0.088 0.912 43 H 0.067 0.933 44 H 0.011 0.989 45 H 0.057 0.943 46 H 0.080 0.920 47 H 0.032 0.968 48 H 0.069 0.931 49 H 0.089 0.911 50 H 0.083 0.917 Dipole moment (debyes) X Y Z Total from point charges -3.350 14.309 -12.919 19.567 hybrid contribution 0.946 -1.383 1.252 2.091 sum -2.405 12.926 -11.667 17.578 Atomic orbital electron populations 1.20405 0.83979 1.04702 1.04123 1.22465 0.99320 0.86331 0.96700 1.70297 1.00676 1.30689 1.20962 1.27566 0.96660 0.78947 0.94465 1.20148 0.89347 0.93053 0.99879 1.21832 1.04348 0.99077 0.94145 1.21854 1.04420 0.99271 0.94288 1.84474 1.29603 1.24622 1.69615 1.22890 0.81873 0.96328 1.18603 1.16397 0.85684 0.81745 0.76746 1.90795 1.16282 1.82355 1.52722 1.45995 1.09789 1.06227 1.72355 1.20940 0.98144 0.78808 0.95922 0.89262 1.22407 0.98459 1.00985 0.96514 1.20386 0.85416 0.92872 0.95139 1.44262 1.34396 1.46369 1.07924 1.19496 1.26522 1.02569 0.90743 0.91198 1.25785 1.00928 0.98645 0.99052 1.70191 1.54287 1.24571 1.09030 0.85374 0.78550 0.79514 0.77211 1.19901 1.22364 1.20498 1.21081 0.95115 0.97452 0.84023 1.21813 0.95470 0.99649 0.95700 0.89597 1.21702 1.02438 1.01235 0.93780 0.89609 0.89367 0.88718 0.86742 0.91892 0.88007 0.92515 0.93426 0.87877 0.91807 0.75854 0.93041 0.91198 0.93339 0.98895 0.94284 0.92037 0.96781 0.93099 0.91118 0.91658 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.08 -1.84 9.87 71.24 0.70 -1.14 16 2 C 0.08 2.27 7.16 41.83 0.30 2.57 16 3 N -0.50 -13.90 11.26 -291.06 -3.28 -17.18 16 4 C 0.23 5.93 6.82 88.29 0.60 6.53 16 5 C 0.00 -0.08 3.39 -11.54 -0.04 -0.12 16 6 C -0.14 -1.72 9.17 71.98 0.66 -1.06 16 7 C -0.14 -2.10 9.18 71.98 0.66 -1.44 16 8 O -0.20 -5.97 10.57 -7.07 -0.07 -6.05 16 9 C -0.14 -4.61 7.18 24.04 0.17 -4.44 16 10 C 0.61 20.92 7.75 86.46 0.67 21.59 16 11 O -0.54 -19.99 14.46 -4.30 -0.06 -20.05 16 12 N -0.69 -23.10 3.59 -446.33 -1.60 -24.71 16 13 C 0.17 5.52 2.21 45.02 0.10 5.62 16 14 H 0.09 2.84 7.58 -2.39 -0.02 2.82 16 15 C -0.14 -5.69 5.77 30.66 0.18 -5.52 16 16 C 0.19 9.16 5.05 86.36 0.44 9.60 16 17 N -0.61 -29.50 2.99 -699.16 -2.09 -31.59 16 18 C -0.26 -14.16 9.58 84.03 0.81 -13.36 16 19 H 0.07 3.62 7.88 -2.91 -0.02 3.60 16 20 C -0.05 -2.69 4.92 84.86 0.42 -2.28 16 21 N -0.93 -55.43 11.20 21.65 0.24 -55.19 16 22 Si 0.97 44.59 29.59 68.60 2.03 46.62 16 23 H -0.27 -12.11 7.11 99.48 0.71 -11.40 16 24 H -0.30 -13.94 7.11 99.48 0.71 -13.23 16 25 H -0.28 -12.55 7.11 99.48 0.71 -11.85 16 26 C 0.15 5.71 5.50 86.36 0.48 6.19 16 27 C -0.11 -3.26 2.67 -10.71 -0.03 -3.29 16 28 H 0.09 2.68 8.14 -2.39 -0.02 2.66 16 29 C -0.13 -3.17 9.05 71.98 0.65 -2.52 16 30 H 0.09 2.01 8.14 -2.39 -0.02 1.99 16 31 H 0.09 2.30 6.47 -2.39 -0.02 2.29 16 32 H 0.09 1.89 8.14 -2.38 -0.02 1.87 16 33 H 0.11 1.65 8.14 -2.39 -0.02 1.63 16 34 H 0.06 0.91 8.14 -2.39 -0.02 0.89 16 35 H 0.10 0.74 8.14 -2.39 -0.02 0.72 16 36 H 0.06 0.76 8.14 -2.38 -0.02 0.74 16 37 H 0.05 0.85 8.14 -2.39 -0.02 0.83 16 38 H 0.10 0.95 8.14 -2.39 -0.02 0.93 16 39 H 0.06 1.04 8.14 -2.39 -0.02 1.02 16 40 H 0.41 13.56 6.53 -92.71 -0.60 12.96 16 41 H 0.05 2.07 8.14 -2.39 -0.02 2.05 16 42 H 0.07 2.72 8.14 -2.39 -0.02 2.70 16 43 H 0.05 2.73 6.06 -2.39 -0.01 2.71 16 44 H -0.01 -0.37 7.74 -2.39 -0.02 -0.39 16 45 H 0.25 14.39 8.31 -92.71 -0.77 13.62 16 46 H 0.06 2.30 7.93 -2.39 -0.02 2.28 16 47 H 0.01 0.55 6.64 -2.39 -0.02 0.53 16 48 H 0.05 1.21 7.54 -2.39 -0.02 1.19 16 49 H 0.07 1.49 8.14 -2.39 -0.02 1.47 16 50 H 0.06 1.39 8.14 -2.39 -0.02 1.37 16 Total: -1.00 -67.46 396.92 2.26 -65.21 By element: Atomic # 1 Polarization: 25.68 SS G_CDS: 0.33 Total: 26.01 kcal Atomic # 6 Polarization: 10.16 SS G_CDS: 6.76 Total: 16.92 kcal Atomic # 7 Polarization: -121.93 SS G_CDS: -6.73 Total: -128.66 kcal Atomic # 8 Polarization: -25.97 SS G_CDS: -0.14 Total: -26.10 kcal Atomic # 14 Polarization: 44.59 SS G_CDS: 2.03 Total: 46.62 kcal Total: -67.46 2.26 -65.21 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000943498791.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 34.001 kcal (2) G-P(sol) polarization free energy of solvation -67.462 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -33.461 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.257 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -65.205 kcal (6) G-S(sol) free energy of system = (1) + (5) -31.204 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.19 seconds