Wall clock time and date at job start Tue Mar 31 2020 20:13:38
AMSOL-version 7.1
by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers,
I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget,
B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar
Copyright 2004 by Regents of the University of Minnesota.
All rights reserved.
Notice: recipients of this code are asked to comply
with the user agreement in Section 1 of the documentation file.
*******************************************************************************
* 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION
* - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT)
* GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK
* TLIMIT= - A TIME OF 15. SECONDS REQUESTED
* CHARGE - CHARGE ON SYSTEM= -1
* AM1 - THE AM1 HAMILTONIAN TO BE USED
* DEV - DEVELOPER OPTIONS ARE ALLOWED
* SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED
* - CHARGE MODEL 2 WILL BE USED (CM2A)
* - THE SOLVENT IS USER-SPECIFIED
* DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06
* IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345
* ALPHA - THE SOLVENT ALPHA IS 0.00
* BETA - THE SOLVENT BETA IS 0.00
* GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS
* 38.93 CAL MOL^-1 ANGSTROM^-2
* FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00
* FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00
*******************************************************************************
Atom NO. Chemical Bond length Bond angle Dihedral angle
number (k) symbol (angstroms) (degrees) (degrees)
(I) NA:I NB:NA:I NC:NB:NA:I NA NB NC
1 1 C
2 2 C 1.50701 * 1
3 3 N 1.33700 * 126.27585 * 2 1
4 4 C 1.30617 * 108.99792 * 180.27240 * 3 2 1
5 5 C 1.50695 * 125.42375 * 179.71065 * 4 3 2
6 6 C 1.53002 * 109.47053 * 300.02988 * 5 4 3
7 7 C 1.52996 * 109.47255 * 60.02743 * 5 4 3
8 8 O 1.33670 * 109.15109 * 359.73861 * 4 3 2
9 9 C 1.35345 * 107.68642 * 359.97438 * 8 4 3
10 10 C 1.46721 * 126.64146 * 180.02562 * 9 8 4
11 11 O 1.21689 * 119.99676 * 180.02562 * 10 9 8
12 12 N 1.34767 * 120.00370 * 0.03263 * 10 9 8
13 13 C 1.46493 * 120.00527 * 179.97438 * 12 10 9
14 14 H 1.09000 * 109.44745 * 324.96321 * 13 12 10
15 15 C 1.53039 * 109.46038 * 84.92620 * 13 12 10
16 16 C 1.53194 * 109.30974 * 58.66234 * 15 13 12
17 17 N 1.47199 * 108.85857 * 54.65180 * 16 15 13
18 18 C 1.36935 * 120.81754 * 126.33714 * 17 16 15
19 19 H 1.08007 * 119.99920 * 207.54133 * 18 17 16
20 20 C 1.38804 * 120.00238 * 27.53769 * 18 17 16
21 21 N 1.31624 * 120.00025 * 17.25587 * 20 18 17
22 22 Si 1.86801 * 120.00311 * 197.25673 * 20 18 17
23 23 H 1.48497 * 109.47244 * 60.00150 * 22 20 18
24 24 H 1.48504 * 109.46988 * 180.02562 * 22 20 18
25 25 H 1.48500 * 109.47113 * 300.00082 * 22 20 18
26 26 C 1.46936 * 118.55327 * 306.47807 * 17 16 15
27 27 C 1.53045 * 109.46332 * 204.99902 * 13 12 10
28 28 H 1.09001 * 109.49479 * 181.39431 * 27 13 12
29 29 C 1.52998 * 109.52065 * 61.30988 * 27 13 12
30 30 H 1.09007 * 109.46580 * 270.18471 * 1 2 3
31 31 H 1.08999 * 109.47090 * 30.17626 * 1 2 3
32 32 H 1.08993 * 109.47047 * 150.18597 * 1 2 3
33 33 H 1.08997 * 109.47219 * 180.02562 * 5 4 3
34 34 H 1.09003 * 109.47234 * 180.02562 * 6 5 4
35 35 H 1.09007 * 109.46859 * 299.99723 * 6 5 4
36 36 H 1.08997 * 109.47239 * 59.99852 * 6 5 4
37 37 H 1.09005 * 109.46874 * 59.99873 * 7 5 4
38 38 H 1.09000 * 109.47477 * 179.97438 * 7 5 4
39 39 H 1.09006 * 109.46912 * 300.00052 * 7 5 4
40 40 H 0.97008 * 119.99626 * 359.97438 * 12 10 9
41 41 H 1.09007 * 109.49684 * 178.60777 * 15 13 12
42 42 H 1.08993 * 109.50294 * 298.67406 * 15 13 12
43 43 H 1.09001 * 109.58692 * 174.42241 * 16 15 13
44 44 H 1.08996 * 109.58363 * 294.84182 * 16 15 13
45 45 H 0.96996 * 120.00327 * 179.97438 * 21 20 18
46 46 H 1.08994 * 109.58176 * 293.68056 * 26 17 16
47 47 H 1.08992 * 109.58520 * 173.40016 * 26 17 16
48 48 H 1.08997 * 109.47244 * 300.14135 * 29 27 13
49 49 H 1.09001 * 109.47450 * 60.15145 * 29 27 13
50 50 H 1.09004 * 109.46685 * 180.14388 * 29 27 13
Note: An asterisk (*) indicates this parameter was or will be optimized.
Cartesian coordinates (angstroms)
NO. Atom X Y Z
1 6 0.0000 0.0000 0.0000
2 6 1.5070 0.0000 0.0000
3 7 2.2981 1.0779 0.0000
4 6 3.5453 0.6899 -0.0059
5 6 4.7440 1.6031 -0.0141
6 6 4.7056 2.4839 -1.2646
7 6 4.7197 2.4879 1.2338
8 8 3.5890 -0.6461 -0.0040
9 6 2.3137 -1.0992 0.0039
10 6 1.8827 -2.5017 0.0090
11 8 0.6967 -2.7737 0.0156
12 7 2.8004 -3.4887 0.0066
13 6 2.3701 -4.8890 0.0123
14 1 1.4622 -4.9873 0.6074
15 6 2.0908 -5.3424 -1.4225
16 6 3.3593 -5.1704 -2.2641
17 7 4.4656 -5.8875 -1.6094
18 6 5.2057 -6.8127 -2.2960
19 1 5.6815 -7.6246 -1.7661
20 6 5.3442 -6.7071 -3.6731
21 7 5.0699 -5.5701 -4.2769
22 14 5.9200 -8.1785 -4.6695
23 1 4.9656 -9.3019 -4.4902
24 1 5.9854 -7.8084 -6.1062
25 1 7.2674 -8.5947 -4.2042
26 6 4.7577 -5.5918 -0.2001
27 6 3.4737 -5.7590 0.6184
28 1 3.1642 -6.8040 0.6002
29 6 3.7294 -5.3271 2.0637
30 1 -0.3633 0.0033 1.0278
31 1 -0.3633 0.8884 -0.5166
32 1 -0.3633 -0.8916 -0.5109
33 1 5.6558 1.0058 -0.0182
34 1 5.5729 3.1441 -1.2708
35 1 4.7230 1.8535 -2.1537
36 1 3.7939 3.0812 -1.2604
37 1 4.7471 1.8604 2.1247
38 1 5.5870 3.1481 1.2281
39 1 3.8079 3.0852 1.2379
40 1 3.7459 -3.2718 0.0011
41 1 1.7945 -6.3914 -1.4213
42 1 1.2884 -4.7381 -1.8454
43 1 3.1960 -5.5832 -3.2596
44 1 3.6057 -4.1115 -2.3413
45 1 5.1671 -5.4962 -5.2391
46 1 5.1183 -4.5672 -0.1090
47 1 5.5180 -6.2807 0.1678
48 1 4.0377 -4.2818 2.0814
49 1 2.8155 -5.4464 2.6457
50 1 4.5173 -5.9456 2.4937
RHF calculation, no. of doubly occupied orbitals= 64
REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN:
H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987).
REFERENCE FOR CHARGE MODEL 2:
J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885.
REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL:
J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and
D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63
P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted.
CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R
& SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93
& DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV
ZINC000943498792.mol2 50
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
SCF FIELD WAS ACHIEVED
Wall clock time and date at job start Tue Mar 31 2020 20:13:38
Heat of formation + Delta-G solvation = -11.561911 kcal
Electronic energy + Delta-G solvation = -30442.138841 eV
Core-core repulsion = 26471.016839 eV
Total energy + Delta-G solvation = -3971.122002 eV
No. of doubly occupied orbitals = 64
Molecular weight
(most abundant/longest-lived isotopes) = 335.200 amu
Computer time = 1.10 seconds
Orbital eigenvalues (eV)
-43.47170 -39.84235 -37.70884 -36.08555 -35.24520 -34.25485 -32.58944 -31.27698
-30.97573 -30.07012 -27.79280 -27.50177 -25.90771 -25.33214 -24.31014 -22.48614
-21.70325 -21.17325 -20.70010 -20.46008 -18.61801 -18.15474 -16.95389 -16.76538
-16.34050 -15.50469 -14.93465 -14.79406 -14.73711 -14.53081 -14.02957 -13.96994
-13.78206 -13.46453 -13.34148 -13.25187 -13.12784 -12.92994 -12.57708 -12.49632
-12.36453 -12.15999 -11.99332 -11.61543 -11.52721 -11.41768 -11.38126 -11.11216
-10.97795 -10.86039 -10.80323 -10.71274 -10.41074 -10.26367 -10.10267 -9.91749
-9.78113 -9.48248 -8.94683 -8.59598 -8.49051 -6.72320 -5.82301 -3.25154
0.84534 2.35302 2.37242 3.21692 3.35040 3.36273 3.42438 3.43368
3.77463 4.45844 4.51233 4.63574 4.69960 4.78198 4.96372 5.12372
5.26895 5.32532 5.32714 5.35512 5.41268 5.45689 5.51034 5.55531
5.56112 5.63091 5.64306 5.80867 5.83178 5.88417 5.91177 5.93379
5.98865 6.04074 6.10981 6.23063 6.26629 6.32528 6.40232 6.56421
6.61551 6.70283 6.85562 6.88984 7.32323 7.48218 7.62911 7.73490
7.75600 8.25737 8.39923 9.16221 9.79717 10.36117 11.25950
Molecular weight = 335.20amu
Principal moments of inertia in cm(-1)
A = 0.012103 B = 0.003396 C = 0.003068
Principal moments of inertia in units of 10**(-40)*gram-cm**2
A = 2313.000425 B = 8241.881373 C = 9124.423051
Net atomic charges, atomic populations, and dipole contributions
calculated with CM2
Atom NO. Type Charge No. of electrons
1 C -0.078 4.078
2 C 0.074 3.926
3 N -0.484 5.484
4 C 0.221 3.779
5 C -0.001 4.001
6 C -0.144 4.144
7 C -0.143 4.143
8 O -0.185 6.185
9 C -0.111 4.111
10 C 0.607 3.393
11 O -0.523 6.523
12 N -0.696 5.696
13 C 0.160 3.840
14 H 0.077 0.923
15 C -0.155 4.155
16 C 0.173 3.827
17 N -0.591 5.591
18 C -0.256 4.256
19 H 0.066 0.934
20 C 0.004 3.996
21 N -0.901 5.901
22 Si 0.902 3.098
23 H -0.284 1.284
24 H -0.291 1.291
25 H -0.283 1.283
26 C 0.151 3.849
27 C -0.119 4.119
28 H 0.084 0.916
29 C -0.142 4.142
30 H 0.079 0.921
31 H 0.074 0.926
32 H 0.095 0.905
33 H 0.102 0.898
34 H 0.073 0.927
35 H 0.062 0.938
36 H 0.069 0.931
37 H 0.059 0.941
38 H 0.073 0.927
39 H 0.070 0.930
40 H 0.405 0.595
41 H 0.067 0.933
42 H 0.056 0.944
43 H 0.087 0.913
44 H 0.017 0.983
45 H 0.254 0.746
46 H 0.012 0.988
47 H 0.058 0.942
48 H 0.049 0.951
49 H 0.049 0.951
50 H 0.055 0.945
For the charges calculated by CM2:
Dipole moment (debyes) X Y Z Total
from point charges -2.899 13.425 11.301 17.786
Note: The Mulliken population analysis charges presented below were not
used in the solvation calculation but are provided for completeness.
The chosen solvation model uses CM2 partial charges for calculating
solvation energies.
Net atomic charges, atomic populations, and dipole contributions
using Mulliken population analysis
Atom NO. Type Charge No. of electrons
1 C -0.135 4.135
2 C -0.050 4.050
3 N -0.214 5.214
4 C 0.015 3.985
5 C -0.020 4.020
6 C -0.202 4.202
7 C -0.200 4.200
8 O -0.071 6.071
9 C -0.166 4.166
10 C 0.392 3.608
11 O -0.402 6.402
12 N -0.346 5.346
13 C 0.056 3.944
14 H 0.095 0.905
15 C -0.195 4.195
16 C 0.047 3.953
17 N -0.313 5.313
18 C -0.385 4.385
19 H 0.083 0.917
20 C -0.194 4.194
21 N -0.545 5.545
22 Si 0.732 3.268
23 H -0.210 1.210
24 H -0.216 1.216
25 H -0.209 1.209
26 C 0.024 3.976
27 C -0.140 4.140
28 H 0.103 0.897
29 C -0.200 4.200
30 H 0.097 0.903
31 H 0.093 0.907
32 H 0.114 0.886
33 H 0.120 0.880
34 H 0.092 0.908
35 H 0.081 0.919
36 H 0.089 0.911
37 H 0.078 0.922
38 H 0.092 0.908
39 H 0.089 0.911
40 H 0.242 0.758
41 H 0.085 0.915
42 H 0.075 0.925
43 H 0.106 0.894
44 H 0.035 0.965
45 H 0.064 0.936
46 H 0.030 0.970
47 H 0.076 0.924
48 H 0.068 0.932
49 H 0.068 0.932
50 H 0.074 0.926
Dipole moment (debyes) X Y Z Total
from point charges -3.815 13.807 11.103 18.124
hybrid contribution 1.064 -1.335 -0.667 1.833
sum -2.751 12.472 10.436 16.493
Atomic orbital electron populations
1.20351 0.85402 1.04287 1.03423 1.22020 0.98242 0.86415 0.98342
1.70241 1.00257 1.31012 1.19875 1.26509 0.95610 0.79258 0.97103
1.19762 0.90610 0.93169 0.98469 1.21851 1.03358 0.99415 0.95576
1.21840 1.03412 0.99335 0.95439 1.84484 1.29864 1.23624 1.69109
1.23063 0.81197 0.96543 1.15817 1.16290 0.85925 0.81262 0.77350
1.90819 1.15723 1.81848 1.51837 1.46054 1.09872 1.06400 1.72278
1.21010 0.97161 0.78453 0.97789 0.90479 1.22579 1.00847 1.00786
0.95272 1.20780 0.83564 0.94748 0.96183 1.44115 1.34077 1.46757
1.06383 1.19126 1.27040 1.02399 0.89935 0.91658 1.25023 1.00108
0.96470 0.97841 1.70024 1.52496 1.22844 1.09177 0.86374 0.78656
0.82560 0.79192 1.20998 1.21643 1.20893 1.20907 0.93160 0.97425
0.86104 1.21959 0.97922 0.99685 0.94412 0.89723 1.21772 1.01104
1.01009 0.96140 0.90287 0.90705 0.88589 0.88028 0.90810 0.91920
0.91147 0.92212 0.90823 0.91138 0.75801 0.91475 0.92541 0.89446
0.96471 0.93564 0.96983 0.92393 0.93180 0.93179 0.92608
Number of geometries 1
Number of calculations of the screened coulomb radii 1
The total number of SCF iterations 16.
Note: The number of geometries may not
correspond to the number of cycles due to rejected geometry changes.
In the following table subtotal= G_P + SS G_CDS.
Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M
number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value
1 C -0.08 -0.98 9.87 36.01 0.36 -0.62 16
2 C 0.07 1.11 7.16 -82.46 -0.59 0.52 16
3 N -0.48 -6.92 11.26 -7.07 -0.08 -7.00 16
4 C 0.22 2.93 6.82 -12.80 -0.09 2.84 16
5 C 0.00 -0.01 3.39 -91.77 -0.31 -0.32 16
6 C -0.14 -1.19 9.18 37.16 0.34 -0.85 16
7 C -0.14 -1.06 9.17 37.16 0.34 -0.72 16
8 O -0.18 -2.81 10.57 4.41 0.05 -2.76 16
9 C -0.11 -1.79 7.18 -36.84 -0.26 -2.05 16
10 C 0.61 10.40 7.75 -12.84 -0.10 10.30 16
11 O -0.52 -9.67 14.46 5.20 0.08 -9.60 16
12 N -0.70 -11.63 3.59 -55.06 -0.20 -11.83 16
13 C 0.16 2.72 2.21 -67.89 -0.15 2.57 16
14 H 0.08 1.29 7.58 -51.93 -0.39 0.90 16
15 C -0.15 -3.03 5.77 -26.61 -0.15 -3.19 16
16 C 0.17 4.08 5.07 -3.56 -0.02 4.06 16
17 N -0.59 -14.23 3.01 -172.10 -0.52 -14.74 16
18 C -0.26 -6.83 9.59 -15.06 -0.14 -6.98 16
19 H 0.07 1.71 7.89 -52.48 -0.41 1.29 16
20 C 0.00 0.12 4.92 -17.43 -0.09 0.03 16
21 N -0.90 -25.88 11.18 55.49 0.62 -25.26 16
22 Si 0.90 21.44 29.59 -169.99 -5.03 16.41 16
23 H -0.28 -6.68 7.11 56.52 0.40 -6.28 16
24 H -0.29 -6.98 7.11 56.52 0.40 -6.58 16
25 H -0.28 -6.62 7.11 56.52 0.40 -6.22 16
26 C 0.15 2.95 5.49 -3.71 -0.02 2.93 16
27 C -0.12 -1.93 2.67 -90.50 -0.24 -2.18 16
28 H 0.08 1.41 8.14 -51.93 -0.42 0.99 16
29 C -0.14 -1.89 9.06 37.16 0.34 -1.55 16
30 H 0.08 0.89 8.14 -51.92 -0.42 0.47 16
31 H 0.07 0.82 8.14 -51.93 -0.42 0.40 16
32 H 0.10 1.31 6.47 -51.93 -0.34 0.98 16
33 H 0.10 0.83 8.14 -51.93 -0.42 0.41 16
34 H 0.07 0.44 8.14 -51.93 -0.42 0.02 16
35 H 0.06 0.58 8.14 -51.92 -0.42 0.16 16
36 H 0.07 0.62 8.14 -51.93 -0.42 0.20 16
37 H 0.06 0.46 8.14 -51.93 -0.42 0.04 16
38 H 0.07 0.39 8.14 -51.93 -0.42 -0.03 16
39 H 0.07 0.57 8.14 -51.93 -0.42 0.15 16
40 H 0.41 6.77 6.52 -40.82 -0.27 6.51 16
41 H 0.07 1.31 8.14 -51.93 -0.42 0.88 16
42 H 0.06 1.11 8.14 -51.93 -0.42 0.69 16
43 H 0.09 2.35 6.04 -51.93 -0.31 2.04 16
44 H 0.02 0.43 7.74 -51.93 -0.40 0.03 16
45 H 0.25 7.12 8.31 -40.82 -0.34 6.78 16
46 H 0.01 0.24 6.64 -51.93 -0.34 -0.10 16
47 H 0.06 1.12 7.93 -51.93 -0.41 0.71 16
48 H 0.05 0.66 7.53 -51.93 -0.39 0.27 16
49 H 0.05 0.62 8.14 -51.93 -0.42 0.20 16
50 H 0.05 0.68 8.14 -51.93 -0.42 0.26 16
LS Contribution 396.93 15.07 5.98 5.98
Total: -1.00 -30.65 396.93 -8.22 -38.87
By element:
Atomic # 1 Polarization: 13.45 SS G_CDS: -8.33 Total: 5.13 kcal
Atomic # 6 Polarization: 5.60 SS G_CDS: -0.79 Total: 4.80 kcal
Atomic # 7 Polarization: -58.66 SS G_CDS: -0.17 Total: -58.83 kcal
Atomic # 8 Polarization: -12.48 SS G_CDS: 0.12 Total: -12.36 kcal
Atomic # 14 Polarization: 21.44 SS G_CDS: -5.03 Total: 16.41 kcal
Total LS contribution 5.98 Total: 5.98 kcal
Total: -30.65 -8.22 -38.87 kcal
The number of atoms in the molecule is 50
The average number of expansion shells was 16.00
The maximum number of expansion shells was 16
The minimum number of expansion shells was 16
**** NOTA BENE ****
This is the net solvation energy for this exact molecular structure
(nuclear and electronic)! The standard-state solvation energy should be
obtained as the difference between the heat of formation plus delta-G solvation
for the relaxed solvated system and that for the relaxed gas-phase system.
ZINC000943498792.mol2 50
1SCF run
This is a breakdown of the solvation energy calculated
without geometric relaxation in solution:
(1) E-EN(sol) electronic-nuclear energy of solute 27.312 kcal
(2) G-P(sol) polarization free energy of solvation -30.653 kcal
(3) G-ENP(sol) elect.-nuc.-pol. free energy of system -3.341 kcal
(4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.221 kcal
(5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.873 kcal
(6) G-S(sol) free energy of system = (1) + (5) -11.562 kcal
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
Total computer time = 1.10 seconds