Wall clock time and date at job start Tue Mar 31 2020 20:13:37
AMSOL-version 7.1
by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers,
I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget,
B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar
Copyright 2004 by Regents of the University of Minnesota.
All rights reserved.
Notice: recipients of this code are asked to comply
with the user agreement in Section 1 of the documentation file.
*******************************************************************************
* 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION
* - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT)
* GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK
* TLIMIT= - A TIME OF 15. SECONDS REQUESTED
* CHARGE - CHARGE ON SYSTEM= -1
* AM1 - THE AM1 HAMILTONIAN TO BE USED
* SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED
* - CHARGE MODEL 2 WILL BE USED (CM2A)
* - THE SOLVENT IS WATER
*******************************************************************************
Atom NO. Chemical Bond length Bond angle Dihedral angle
number (k) symbol (angstroms) (degrees) (degrees)
(I) NA:I NB:NA:I NC:NB:NA:I NA NB NC
1 1 C
2 2 C 1.50701 * 1
3 3 N 1.33700 * 126.27585 * 2 1
4 4 C 1.30617 * 108.99792 * 180.27240 * 3 2 1
5 5 C 1.50695 * 125.42375 * 179.71065 * 4 3 2
6 6 C 1.53002 * 109.47053 * 300.02988 * 5 4 3
7 7 C 1.52996 * 109.47255 * 60.02743 * 5 4 3
8 8 O 1.33670 * 109.15109 * 359.73861 * 4 3 2
9 9 C 1.35345 * 107.68642 * 359.97438 * 8 4 3
10 10 C 1.46721 * 126.64146 * 180.02562 * 9 8 4
11 11 O 1.21689 * 119.99676 * 180.02562 * 10 9 8
12 12 N 1.34767 * 120.00370 * 0.03263 * 10 9 8
13 13 C 1.46493 * 120.00527 * 179.97438 * 12 10 9
14 14 H 1.09000 * 109.44745 * 324.96321 * 13 12 10
15 15 C 1.53039 * 109.46038 * 84.92620 * 13 12 10
16 16 C 1.53194 * 109.30974 * 58.66234 * 15 13 12
17 17 N 1.47199 * 108.85857 * 54.65180 * 16 15 13
18 18 C 1.36935 * 120.81754 * 126.33714 * 17 16 15
19 19 H 1.08007 * 119.99920 * 207.54133 * 18 17 16
20 20 C 1.38804 * 120.00238 * 27.53769 * 18 17 16
21 21 N 1.31624 * 120.00025 * 17.25587 * 20 18 17
22 22 Si 1.86801 * 120.00311 * 197.25673 * 20 18 17
23 23 H 1.48497 * 109.47244 * 60.00150 * 22 20 18
24 24 H 1.48504 * 109.46988 * 180.02562 * 22 20 18
25 25 H 1.48500 * 109.47113 * 300.00082 * 22 20 18
26 26 C 1.46936 * 118.55327 * 306.47807 * 17 16 15
27 27 C 1.53045 * 109.46332 * 204.99902 * 13 12 10
28 28 H 1.09001 * 109.49479 * 181.39431 * 27 13 12
29 29 C 1.52998 * 109.52065 * 61.30988 * 27 13 12
30 30 H 1.09007 * 109.46580 * 270.18471 * 1 2 3
31 31 H 1.08999 * 109.47090 * 30.17626 * 1 2 3
32 32 H 1.08993 * 109.47047 * 150.18597 * 1 2 3
33 33 H 1.08997 * 109.47219 * 180.02562 * 5 4 3
34 34 H 1.09003 * 109.47234 * 180.02562 * 6 5 4
35 35 H 1.09007 * 109.46859 * 299.99723 * 6 5 4
36 36 H 1.08997 * 109.47239 * 59.99852 * 6 5 4
37 37 H 1.09005 * 109.46874 * 59.99873 * 7 5 4
38 38 H 1.09000 * 109.47477 * 179.97438 * 7 5 4
39 39 H 1.09006 * 109.46912 * 300.00052 * 7 5 4
40 40 H 0.97008 * 119.99626 * 359.97438 * 12 10 9
41 41 H 1.09007 * 109.49684 * 178.60777 * 15 13 12
42 42 H 1.08993 * 109.50294 * 298.67406 * 15 13 12
43 43 H 1.09001 * 109.58692 * 174.42241 * 16 15 13
44 44 H 1.08996 * 109.58363 * 294.84182 * 16 15 13
45 45 H 0.96996 * 120.00327 * 179.97438 * 21 20 18
46 46 H 1.08994 * 109.58176 * 293.68056 * 26 17 16
47 47 H 1.08992 * 109.58520 * 173.40016 * 26 17 16
48 48 H 1.08997 * 109.47244 * 300.14135 * 29 27 13
49 49 H 1.09001 * 109.47450 * 60.15145 * 29 27 13
50 50 H 1.09004 * 109.46685 * 180.14388 * 29 27 13
Note: An asterisk (*) indicates this parameter was or will be optimized.
Cartesian coordinates (angstroms)
NO. Atom X Y Z
1 6 0.0000 0.0000 0.0000
2 6 1.5070 0.0000 0.0000
3 7 2.2981 1.0779 0.0000
4 6 3.5453 0.6899 -0.0059
5 6 4.7440 1.6031 -0.0141
6 6 4.7056 2.4839 -1.2646
7 6 4.7197 2.4879 1.2338
8 8 3.5890 -0.6461 -0.0040
9 6 2.3137 -1.0992 0.0039
10 6 1.8827 -2.5017 0.0090
11 8 0.6967 -2.7737 0.0156
12 7 2.8004 -3.4887 0.0066
13 6 2.3701 -4.8890 0.0123
14 1 1.4622 -4.9873 0.6074
15 6 2.0908 -5.3424 -1.4225
16 6 3.3593 -5.1704 -2.2641
17 7 4.4656 -5.8875 -1.6094
18 6 5.2057 -6.8127 -2.2960
19 1 5.6815 -7.6246 -1.7661
20 6 5.3442 -6.7071 -3.6731
21 7 5.0699 -5.5701 -4.2769
22 14 5.9200 -8.1785 -4.6695
23 1 4.9656 -9.3019 -4.4902
24 1 5.9854 -7.8084 -6.1062
25 1 7.2674 -8.5947 -4.2042
26 6 4.7577 -5.5918 -0.2001
27 6 3.4737 -5.7590 0.6184
28 1 3.1642 -6.8040 0.6002
29 6 3.7294 -5.3271 2.0637
30 1 -0.3633 0.0033 1.0278
31 1 -0.3633 0.8884 -0.5166
32 1 -0.3633 -0.8916 -0.5109
33 1 5.6558 1.0058 -0.0182
34 1 5.5729 3.1441 -1.2708
35 1 4.7230 1.8535 -2.1537
36 1 3.7939 3.0812 -1.2604
37 1 4.7471 1.8604 2.1247
38 1 5.5870 3.1481 1.2281
39 1 3.8079 3.0852 1.2379
40 1 3.7459 -3.2718 0.0011
41 1 1.7945 -6.3914 -1.4213
42 1 1.2884 -4.7381 -1.8454
43 1 3.1960 -5.5832 -3.2596
44 1 3.6057 -4.1115 -2.3413
45 1 5.1671 -5.4962 -5.2391
46 1 5.1183 -4.5672 -0.1090
47 1 5.5180 -6.2807 0.1678
48 1 4.0377 -4.2818 2.0814
49 1 2.8155 -5.4464 2.6457
50 1 4.5173 -5.9456 2.4937
RHF calculation, no. of doubly occupied orbitals= 64
REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN:
H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987).
REFERENCE FOR CHARGE MODEL 2:
J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885.
REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL:
J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and
D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63
P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted.
CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R
& SOLVNT=WATER
ZINC000943498792.mol2 50
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
SCF FIELD WAS ACHIEVED
Wall clock time and date at job start Tue Mar 31 2020 20:13:37
Heat of formation + Delta-G solvation = -31.101409 kcal
Electronic energy + Delta-G solvation = -30442.986137 eV
Core-core repulsion = 26471.016839 eV
Total energy + Delta-G solvation = -3971.969298 eV
No. of doubly occupied orbitals = 64
Molecular weight
(most abundant/longest-lived isotopes) = 335.200 amu
Computer time = 1.21 seconds
Orbital eigenvalues (eV)
-44.59345 -41.25038 -39.21109 -36.94305 -36.37711 -35.91242 -34.05782 -32.92604
-32.28629 -31.62592 -28.95474 -28.12267 -27.42533 -27.03258 -25.39422 -23.98344
-23.11688 -22.72989 -21.88499 -21.42091 -20.15362 -19.43725 -18.66048 -18.10102
-17.31873 -16.96089 -16.77297 -16.19045 -15.92416 -15.58131 -15.50754 -15.41812
-15.11500 -14.79475 -14.63534 -14.35790 -14.28147 -14.09934 -14.05953 -13.58528
-13.34362 -13.18615 -13.09558 -12.97212 -12.73685 -12.72509 -12.55298 -12.39711
-12.33597 -12.24710 -12.20770 -11.99213 -11.98580 -11.82416 -11.71461 -11.53481
-11.25833 -11.13000 -10.54793 -10.26850 -9.84291 -8.69820 -7.88395 -5.33477
-0.32845 1.24372 1.27248 1.46242 1.49069 1.55263 1.92233 2.09507
2.50345 2.75522 3.26908 3.52680 3.58056 3.64472 3.75407 3.91166
4.01613 4.02045 4.07210 4.10466 4.36280 4.39139 4.41838 4.56158
4.61345 4.66034 4.72452 4.75269 4.76077 4.77813 4.80635 4.88478
4.91410 4.93637 4.98104 5.04082 5.06111 5.12119 5.20574 5.27081
5.28891 5.36229 5.39061 5.42921 5.50806 5.62468 5.70166 6.24149
6.36430 6.49987 6.91593 7.12283 7.83499 8.35659 9.17677
Molecular weight = 335.20amu
Principal moments of inertia in cm(-1)
A = 0.012103 B = 0.003396 C = 0.003068
Principal moments of inertia in units of 10**(-40)*gram-cm**2
A = 2313.000425 B = 8241.881373 C = 9124.423051
Net atomic charges, atomic populations, and dipole contributions
calculated with CM2
Atom NO. Type Charge No. of electrons
1 C -0.075 4.075
2 C 0.076 3.924
3 N -0.497 5.497
4 C 0.229 3.771
5 C -0.005 4.005
6 C -0.141 4.141
7 C -0.137 4.137
8 O -0.196 6.196
9 C -0.142 4.142
10 C 0.608 3.392
11 O -0.541 6.541
12 N -0.694 5.694
13 C 0.166 3.834
14 H 0.089 0.911
15 C -0.143 4.143
16 C 0.187 3.813
17 N -0.607 5.607
18 C -0.262 4.262
19 H 0.071 0.929
20 C -0.049 4.049
21 N -0.935 5.935
22 Si 0.965 3.035
23 H -0.279 1.279
24 H -0.297 1.297
25 H -0.274 1.274
26 C 0.149 3.851
27 C -0.106 4.106
28 H 0.086 0.914
29 C -0.134 4.134
30 H 0.094 0.906
31 H 0.091 0.909
32 H 0.083 0.917
33 H 0.115 0.885
34 H 0.103 0.897
35 H 0.046 0.954
36 H 0.063 0.937
37 H 0.056 0.944
38 H 0.101 0.899
39 H 0.062 0.938
40 H 0.405 0.595
41 H 0.069 0.931
42 H 0.051 0.949
43 H 0.049 0.951
44 H -0.007 1.007
45 H 0.248 0.752
46 H 0.014 0.986
47 H 0.061 0.939
48 H 0.050 0.950
49 H 0.064 0.936
50 H 0.070 0.930
For the charges calculated by CM2:
Dipole moment (debyes) X Y Z Total
from point charges -2.341 13.950 13.158 19.319
Note: The Mulliken population analysis charges presented below were not
used in the solvation calculation but are provided for completeness.
The chosen solvation model uses CM2 partial charges for calculating
solvation energies.
Net atomic charges, atomic populations, and dipole contributions
using Mulliken population analysis
Atom NO. Type Charge No. of electrons
1 C -0.132 4.132
2 C -0.048 4.048
3 N -0.226 5.226
4 C 0.024 3.976
5 C -0.024 4.024
6 C -0.198 4.198
7 C -0.194 4.194
8 O -0.083 6.083
9 C -0.197 4.197
10 C 0.394 3.606
11 O -0.422 6.422
12 N -0.344 5.344
13 C 0.062 3.938
14 H 0.107 0.893
15 C -0.183 4.183
16 C 0.061 3.939
17 N -0.330 5.330
18 C -0.392 4.392
19 H 0.088 0.912
20 C -0.245 4.245
21 N -0.581 5.581
22 Si 0.793 3.207
23 H -0.205 1.205
24 H -0.224 1.224
25 H -0.199 1.199
26 C 0.023 3.977
27 C -0.126 4.126
28 H 0.104 0.896
29 C -0.191 4.191
30 H 0.112 0.888
31 H 0.109 0.891
32 H 0.102 0.898
33 H 0.133 0.867
34 H 0.121 0.879
35 H 0.066 0.934
36 H 0.082 0.918
37 H 0.075 0.925
38 H 0.120 0.880
39 H 0.081 0.919
40 H 0.241 0.759
41 H 0.088 0.912
42 H 0.070 0.930
43 H 0.067 0.933
44 H 0.011 0.989
45 H 0.057 0.943
46 H 0.032 0.968
47 H 0.079 0.921
48 H 0.069 0.931
49 H 0.083 0.917
50 H 0.089 0.911
Dipole moment (debyes) X Y Z Total
from point charges -3.258 14.329 13.001 19.621
hybrid contribution 0.932 -1.390 -1.229 2.076
sum -2.325 12.939 11.772 17.647
Atomic orbital electron populations
1.20401 0.83978 1.04411 1.04396 1.22467 0.99321 0.86333 0.96698
1.70301 1.00675 1.30685 1.20968 1.27565 0.96658 0.78946 0.94461
1.20147 0.89352 0.93052 0.99881 1.21856 1.04417 0.99238 0.94318
1.21832 1.04341 0.99118 0.94112 1.84476 1.29602 1.24620 1.69625
1.22891 0.81872 0.96321 1.18610 1.16394 0.85683 0.81750 0.76757
1.90797 1.16277 1.82349 1.52728 1.45992 1.09797 1.06226 1.72345
1.20940 0.98113 0.78815 0.95947 0.89270 1.22405 0.98431 1.01008
0.96498 1.20451 0.85367 0.92849 0.95253 1.44325 1.34119 1.46529
1.08022 1.19497 1.26378 1.02911 0.90440 0.91152 1.25760 1.01070
0.98689 0.98933 1.70187 1.54379 1.24737 1.08802 0.85377 0.78529
0.79556 0.77204 1.20514 1.22376 1.19913 1.21074 0.95118 0.97474
0.84032 1.21810 0.95451 0.99642 0.95725 0.89602 1.21700 1.02426
1.01247 0.93777 0.88785 0.89069 0.89846 0.86738 0.87882 0.93430
0.91795 0.92514 0.88006 0.91901 0.75853 0.91203 0.92998 0.93254
0.98852 0.94290 0.96788 0.92065 0.93089 0.91659 0.91118
Number of geometries 1
Number of calculations of the screened coulomb radii 1
The total number of SCF iterations 18.
Note: The number of geometries may not
correspond to the number of cycles due to rejected geometry changes.
In the following table subtotal= G_P + SS G_CDS.
Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M
number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value
1 C -0.08 -1.84 9.87 71.24 0.70 -1.13 16
2 C 0.08 2.26 7.16 41.83 0.30 2.56 16
3 N -0.50 -13.89 11.26 -291.05 -3.28 -17.16 16
4 C 0.23 5.92 6.82 88.29 0.60 6.52 16
5 C 0.00 -0.08 3.39 -11.54 -0.04 -0.12 16
6 C -0.14 -2.10 9.18 71.98 0.66 -1.44 16
7 C -0.14 -1.72 9.17 71.98 0.66 -1.06 16
8 O -0.20 -5.97 10.57 -7.15 -0.08 -6.04 16
9 C -0.14 -4.61 7.18 24.05 0.17 -4.44 16
10 C 0.61 20.90 7.75 86.46 0.67 21.57 16
11 O -0.54 -19.99 14.46 -4.31 -0.06 -20.05 16
12 N -0.69 -23.08 3.59 -446.35 -1.60 -24.68 16
13 C 0.17 5.52 2.21 45.02 0.10 5.62 16
14 H 0.09 2.84 7.58 -2.39 -0.02 2.82 16
15 C -0.14 -5.68 5.77 30.67 0.18 -5.50 16
16 C 0.19 9.10 5.07 86.31 0.44 9.54 16
17 N -0.61 -29.52 3.01 -698.40 -2.10 -31.62 16
18 C -0.26 -14.11 9.59 84.03 0.81 -13.30 16
19 H 0.07 3.64 7.89 -2.91 -0.02 3.62 16
20 C -0.05 -2.72 4.92 84.86 0.42 -2.31 16
21 N -0.94 -55.45 11.18 21.65 0.24 -55.21 16
22 Si 0.97 44.61 29.59 68.60 2.03 46.64 16
23 H -0.28 -12.57 7.11 99.48 0.71 -11.86 16
24 H -0.30 -13.96 7.11 99.48 0.71 -13.25 16
25 H -0.27 -12.12 7.11 99.48 0.71 -11.42 16
26 C 0.15 5.70 5.49 86.36 0.47 6.17 16
27 C -0.11 -3.26 2.67 -10.72 -0.03 -3.29 16
28 H 0.09 2.67 8.14 -2.39 -0.02 2.66 16
29 C -0.13 -3.17 9.06 71.98 0.65 -2.52 16
30 H 0.09 2.01 8.14 -2.38 -0.02 1.99 16
31 H 0.09 1.90 8.14 -2.39 -0.02 1.88 16
32 H 0.08 2.28 6.47 -2.39 -0.02 2.26 16
33 H 0.11 1.65 8.14 -2.39 -0.02 1.63 16
34 H 0.10 0.94 8.14 -2.39 -0.02 0.92 16
35 H 0.05 0.85 8.14 -2.38 -0.02 0.83 16
36 H 0.06 1.04 8.14 -2.39 -0.02 1.02 16
37 H 0.06 0.76 8.14 -2.38 -0.02 0.74 16
38 H 0.10 0.73 8.14 -2.39 -0.02 0.71 16
39 H 0.06 0.90 8.14 -2.38 -0.02 0.88 16
40 H 0.41 13.54 6.52 -92.70 -0.60 12.94 16
41 H 0.07 2.71 8.14 -2.38 -0.02 2.69 16
42 H 0.05 2.08 8.14 -2.39 -0.02 2.06 16
43 H 0.05 2.77 6.04 -2.39 -0.01 2.76 16
44 H -0.01 -0.35 7.74 -2.39 -0.02 -0.37 16
45 H 0.25 14.39 8.31 -92.71 -0.77 13.62 16
46 H 0.01 0.55 6.64 -2.39 -0.02 0.53 16
47 H 0.06 2.29 7.93 -2.39 -0.02 2.27 16
48 H 0.05 1.21 7.53 -2.39 -0.02 1.19 16
49 H 0.06 1.39 8.14 -2.39 -0.02 1.37 16
50 H 0.07 1.49 8.14 -2.39 -0.02 1.47 16
Total: -1.00 -67.50 396.93 2.25 -65.25
By element:
Atomic # 1 Polarization: 25.66 SS G_CDS: 0.33 Total: 25.99 kcal
Atomic # 6 Polarization: 10.12 SS G_CDS: 6.77 Total: 16.88 kcal
Atomic # 7 Polarization: -121.93 SS G_CDS: -6.74 Total: -128.67 kcal
Atomic # 8 Polarization: -25.96 SS G_CDS: -0.14 Total: -26.09 kcal
Atomic # 14 Polarization: 44.61 SS G_CDS: 2.03 Total: 46.64 kcal
Total: -67.50 2.25 -65.25 kcal
The number of atoms in the molecule is 50
The average number of expansion shells was 16.00
The maximum number of expansion shells was 16
The minimum number of expansion shells was 16
**** NOTA BENE ****
This is the net solvation energy for this exact molecular structure
(nuclear and electronic)! The standard-state solvation energy should be
obtained as the difference between the heat of formation plus delta-G solvation
for the relaxed solvated system and that for the relaxed gas-phase system.
ZINC000943498792.mol2 50
1SCF run
This is a breakdown of the solvation energy calculated
without geometric relaxation in solution:
(1) E-EN(sol) electronic-nuclear energy of solute 34.147 kcal
(2) G-P(sol) polarization free energy of solvation -67.498 kcal
(3) G-ENP(sol) elect.-nuc.-pol. free energy of system -33.352 kcal
(4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.250 kcal
(5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -65.248 kcal
(6) G-S(sol) free energy of system = (1) + (5) -31.101 kcal
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
Total computer time = 1.21 seconds