Wall clock time and date at job start Tue Mar 31 2020 20:13:42 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50700 * 1 3 3 N 1.33696 * 126.27500 * 2 1 4 4 C 1.30620 * 108.99618 * 180.25739 * 3 2 1 5 5 C 1.50701 * 125.42475 * 179.74619 * 4 3 2 6 6 C 1.53002 * 109.46828 * 300.02635 * 5 4 3 7 7 C 1.52999 * 109.47125 * 60.02346 * 5 4 3 8 8 O 1.33671 * 109.15253 * 359.76609 * 4 3 2 9 9 C 1.35341 * 107.68539 * 0.02562 * 8 4 3 10 10 C 1.46717 * 126.64690 * 179.97438 * 9 8 4 11 11 O 1.21681 * 120.00443 * 180.02562 * 10 9 8 12 12 N 1.34781 * 119.99791 * 0.02562 * 10 9 8 13 13 C 1.46503 * 120.00164 * 179.97438 * 12 10 9 14 14 H 1.08995 * 109.45816 * 325.02965 * 13 12 10 15 15 C 1.53041 * 109.45571 * 85.00042 * 13 12 10 16 16 C 1.53191 * 109.30786 * 181.37338 * 15 13 12 17 17 N 1.46926 * 108.77740 * 305.36253 * 16 15 13 18 18 C 1.36936 * 120.63203 * 233.58665 * 17 16 15 19 19 H 1.08006 * 119.99973 * 150.43817 * 18 17 16 20 20 C 1.38804 * 120.00274 * 330.44290 * 18 17 16 21 21 N 1.31620 * 119.99953 * 344.28253 * 20 18 17 22 22 Si 1.86802 * 120.00327 * 164.28812 * 20 18 17 23 23 H 1.48506 * 109.47153 * 266.30453 * 22 20 18 24 24 H 1.48499 * 109.47180 * 26.30176 * 22 20 18 25 25 H 1.48495 * 109.47561 * 146.30394 * 22 20 18 26 26 C 1.46928 * 118.73507 * 53.86244 * 17 16 15 27 27 H 1.08992 * 109.58666 * 65.92743 * 26 17 16 28 28 C 1.53006 * 109.58385 * 186.35236 * 26 17 16 29 29 C 1.53038 * 109.44890 * 205.05816 * 13 12 10 30 30 H 1.09003 * 109.47015 * 270.14134 * 1 2 3 31 31 H 1.09003 * 109.46600 * 30.13477 * 1 2 3 32 32 H 1.08998 * 109.47170 * 150.13655 * 1 2 3 33 33 H 1.08997 * 109.46990 * 180.02562 * 5 4 3 34 34 H 1.08997 * 109.47649 * 60.00019 * 6 5 4 35 35 H 1.09004 * 109.46602 * 180.02562 * 6 5 4 36 36 H 1.08999 * 109.46897 * 299.99661 * 6 5 4 37 37 H 1.08997 * 109.46946 * 60.00026 * 7 5 4 38 38 H 1.08996 * 109.47430 * 180.02562 * 7 5 4 39 39 H 1.09001 * 109.47016 * 300.00316 * 7 5 4 40 40 H 0.96998 * 119.99833 * 359.97438 * 12 10 9 41 41 H 1.08998 * 109.49885 * 61.42353 * 15 13 12 42 42 H 1.08994 * 109.49873 * 301.32113 * 15 13 12 43 43 H 1.09007 * 109.58340 * 185.57893 * 16 15 13 44 44 H 1.08998 * 109.70667 * 65.22581 * 16 15 13 45 45 H 0.97006 * 120.00109 * 179.97438 * 21 20 18 46 46 H 1.09002 * 109.46933 * 60.00456 * 28 26 17 47 47 H 1.09001 * 109.46782 * 179.97438 * 28 26 17 48 48 H 1.08990 * 109.47330 * 299.99895 * 28 26 17 49 49 H 1.08997 * 109.50045 * 298.57886 * 29 13 12 50 50 H 1.09008 * 109.49486 * 58.67183 * 29 13 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 7 2.2980 1.0778 0.0000 4 6 3.5453 0.6899 -0.0055 5 6 4.7441 1.6030 -0.0129 6 6 4.7062 2.4843 -1.2631 7 6 4.7192 2.4874 1.2354 8 8 3.5890 -0.6461 -0.0041 9 6 2.3137 -1.0992 0.0020 10 6 1.8826 -2.5016 0.0051 11 8 0.6966 -2.7736 0.0103 12 7 2.8003 -3.4887 0.0023 13 6 2.3700 -4.8891 0.0059 14 1 1.4609 -4.9880 0.5991 15 6 2.0936 -5.3412 -1.4298 16 6 1.6111 -6.7951 -1.4191 17 7 2.6000 -7.6164 -0.7076 18 6 3.1332 -8.7321 -1.2958 19 1 4.1327 -9.0519 -1.0404 20 6 2.3893 -9.4520 -2.2205 21 7 1.0896 -9.2641 -2.3089 22 14 3.2326 -10.6876 -3.3392 23 1 3.5865 -10.0315 -4.6237 24 1 4.4670 -11.1880 -2.6826 25 1 2.3151 -11.8254 -3.6010 26 6 3.0014 -7.2212 0.6494 27 1 2.1512 -7.3174 1.3245 28 6 4.1443 -8.1188 1.1281 29 6 3.4725 -5.7594 0.6133 30 1 -0.3633 0.0025 1.0277 31 1 -0.3633 0.8888 -0.5160 32 1 -0.3633 -0.8912 -0.5117 33 1 5.6558 1.0057 -0.0169 34 1 3.7945 3.0817 -1.2591 35 1 5.5735 3.1445 -1.2686 36 1 4.7239 1.8543 -2.1523 37 1 4.7462 1.8596 2.1260 38 1 5.5860 3.1482 1.2299 39 1 3.8075 3.0847 1.2394 40 1 3.7458 -3.2719 -0.0022 41 1 3.0086 -5.2659 -2.0174 42 1 1.3248 -4.7060 -1.8697 43 1 1.5077 -7.1533 -2.4434 44 1 0.6491 -6.8593 -0.9107 45 1 0.5697 -9.7670 -2.9553 46 1 4.9946 -8.0149 0.4541 47 1 4.4408 -7.8238 2.1346 48 1 3.8120 -9.1568 1.1364 49 1 4.3745 -5.6801 0.0065 50 1 3.6852 -5.4218 1.6277 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000947791430.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 20:13:42 Heat of formation + Delta-G solvation = -11.782173 kcal Electronic energy + Delta-G solvation = -29562.118002 eV Core-core repulsion = 25590.986449 eV Total energy + Delta-G solvation = -3971.131553 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 335.200 amu Computer time = 1.25 seconds Orbital eigenvalues (eV) -43.63729 -39.70083 -37.69276 -36.25362 -35.47817 -34.55904 -32.43994 -31.58515 -30.99485 -29.63573 -27.85336 -27.66309 -26.38791 -25.05155 -24.31909 -22.51363 -21.80423 -21.03290 -20.71749 -20.18087 -19.40616 -18.05673 -17.11980 -16.55440 -16.28040 -15.95251 -15.15139 -14.89521 -14.70487 -14.63113 -14.12281 -13.92558 -13.67881 -13.58947 -13.36837 -13.31576 -13.22471 -12.83285 -12.71431 -12.64091 -12.48663 -12.13602 -11.78125 -11.62359 -11.54959 -11.25311 -11.15542 -11.12096 -10.97275 -10.93039 -10.92273 -10.68663 -10.33724 -10.21564 -10.09882 -10.03057 -9.77210 -9.43164 -9.06614 -8.72858 -8.43876 -6.65648 -5.78229 -3.22708 0.68405 2.17483 2.21945 3.09120 3.17472 3.37214 3.44172 3.45394 3.61670 4.34119 4.48191 4.48624 4.53076 4.63695 4.81305 5.15668 5.17570 5.23305 5.28073 5.34749 5.35237 5.40068 5.41687 5.48048 5.53562 5.55589 5.69466 5.72762 5.75006 5.75634 5.85696 5.94597 6.12187 6.14730 6.22015 6.29470 6.35417 6.39682 6.47224 6.59913 6.75279 6.80834 7.00468 7.08011 7.31873 7.36461 7.57982 7.67361 7.82042 8.12866 8.46036 9.21257 9.84668 10.41930 11.30392 Molecular weight = 335.20amu Principal moments of inertia in cm(-1) A = 0.018828 B = 0.002446 C = 0.002383 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1486.790709 B =11442.345181 C =11749.003527 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.080 4.080 2 C 0.077 3.923 3 N -0.483 5.483 4 C 0.219 3.781 5 C 0.001 3.999 6 C -0.144 4.144 7 C -0.144 4.144 8 O -0.188 6.188 9 C -0.114 4.114 10 C 0.605 3.395 11 O -0.512 6.512 12 N -0.710 5.710 13 C 0.150 3.850 14 H 0.086 0.914 15 C -0.147 4.147 16 C 0.175 3.825 17 N -0.588 5.588 18 C -0.252 4.252 19 H 0.070 0.930 20 C 0.003 3.997 21 N -0.902 5.902 22 Si 0.901 3.099 23 H -0.288 1.288 24 H -0.279 1.279 25 H -0.292 1.292 26 C 0.172 3.828 27 H 0.028 0.972 28 C -0.135 4.135 29 C -0.134 4.134 30 H 0.081 0.919 31 H 0.075 0.925 32 H 0.097 0.903 33 H 0.100 0.900 34 H 0.070 0.930 35 H 0.073 0.927 36 H 0.060 0.940 37 H 0.059 0.941 38 H 0.073 0.927 39 H 0.070 0.930 40 H 0.399 0.601 41 H 0.056 0.944 42 H 0.054 0.946 43 H 0.089 0.911 44 H 0.022 0.978 45 H 0.254 0.746 46 H 0.053 0.947 47 H 0.038 0.962 48 H 0.063 0.937 49 H 0.064 0.936 50 H 0.055 0.945 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 7.424 22.321 6.034 24.285 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.137 4.137 2 C -0.047 4.047 3 N -0.212 5.212 4 C 0.013 3.987 5 C -0.019 4.019 6 C -0.202 4.202 7 C -0.202 4.202 8 O -0.075 6.075 9 C -0.169 4.169 10 C 0.389 3.611 11 O -0.390 6.390 12 N -0.359 5.359 13 C 0.047 3.953 14 H 0.104 0.896 15 C -0.187 4.187 16 C 0.049 3.951 17 N -0.311 5.311 18 C -0.381 4.381 19 H 0.088 0.912 20 C -0.196 4.196 21 N -0.546 5.546 22 Si 0.731 3.269 23 H -0.216 1.216 24 H -0.204 1.204 25 H -0.218 1.218 26 C 0.064 3.936 27 H 0.046 0.954 28 C -0.193 4.193 29 C -0.174 4.174 30 H 0.099 0.901 31 H 0.094 0.906 32 H 0.115 0.885 33 H 0.119 0.881 34 H 0.090 0.910 35 H 0.092 0.908 36 H 0.079 0.921 37 H 0.079 0.921 38 H 0.092 0.908 39 H 0.089 0.911 40 H 0.233 0.767 41 H 0.074 0.926 42 H 0.072 0.928 43 H 0.107 0.893 44 H 0.040 0.960 45 H 0.064 0.936 46 H 0.072 0.928 47 H 0.057 0.943 48 H 0.082 0.918 49 H 0.083 0.917 50 H 0.074 0.926 Dipole moment (debyes) X Y Z Total from point charges 6.326 22.560 5.940 24.171 hybrid contribution 1.095 -1.209 -0.681 1.768 sum 7.422 21.350 5.259 23.207 Atomic orbital electron populations 1.20388 0.85242 1.04411 1.03671 1.22073 0.98352 0.86365 0.97927 1.70259 1.00260 1.31045 1.19662 1.26537 0.95671 0.79215 0.97242 1.19761 0.90439 0.93144 0.98552 1.21853 1.03526 0.99416 0.95408 1.21848 1.03535 0.99371 0.95399 1.84447 1.29952 1.23681 1.69437 1.23128 0.81119 0.96606 1.16070 1.16341 0.86074 0.81158 0.77511 1.90870 1.15644 1.81651 1.50815 1.46282 1.09328 1.07021 1.73293 1.21175 0.98531 0.76964 0.98607 0.89628 1.22590 1.00957 1.00758 0.94430 1.20738 0.90201 0.84743 0.99420 1.44190 1.49089 1.27421 1.10385 1.19175 0.96551 1.02307 1.20109 0.91209 1.25113 0.94891 0.97928 1.01652 1.70026 1.04282 1.43528 1.36739 0.86307 0.78676 0.80798 0.81146 1.21551 1.20411 1.21807 1.20445 0.94935 0.89905 0.88309 0.95398 1.21786 0.98405 1.00758 0.98315 1.22472 0.97809 0.97904 0.99248 0.90078 0.90605 0.88459 0.88146 0.91045 0.90761 0.92090 0.92140 0.90764 0.91057 0.76703 0.92568 0.92762 0.89278 0.96008 0.93633 0.92790 0.94299 0.91764 0.91697 0.92630 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.08 -0.94 9.87 36.01 0.36 -0.59 16 2 C 0.08 1.05 7.16 -82.46 -0.59 0.46 16 3 N -0.48 -6.14 11.26 -7.07 -0.08 -6.22 16 4 C 0.22 2.44 6.82 -12.79 -0.09 2.36 16 5 C 0.00 0.00 3.39 -91.77 -0.31 -0.31 16 6 C -0.14 -0.87 9.18 37.16 0.34 -0.53 16 7 C -0.14 -0.84 9.18 37.16 0.34 -0.50 16 8 O -0.19 -2.39 10.57 4.42 0.05 -2.34 16 9 C -0.11 -1.63 7.18 -36.84 -0.26 -1.90 16 10 C 0.60 9.61 7.75 -12.83 -0.10 9.51 16 11 O -0.51 -9.40 14.46 5.21 0.08 -9.32 16 12 N -0.71 -10.57 5.07 -55.06 -0.28 -10.85 16 13 C 0.15 2.60 2.41 -67.89 -0.16 2.43 16 14 H 0.09 1.63 7.57 -51.93 -0.39 1.24 16 15 C -0.15 -2.90 5.65 -26.61 -0.15 -3.05 16 16 C 0.18 4.18 5.28 -3.71 -0.02 4.16 16 17 N -0.59 -14.20 2.98 -164.52 -0.49 -14.69 16 18 C -0.25 -6.63 8.57 -15.06 -0.13 -6.76 16 19 H 0.07 1.79 6.24 -52.48 -0.33 1.46 16 20 C 0.00 0.08 4.93 -17.43 -0.09 0.00 16 21 N -0.90 -25.99 11.23 55.49 0.62 -25.37 16 22 Si 0.90 21.46 29.58 -169.99 -5.03 16.43 16 23 H -0.29 -6.90 7.11 56.52 0.40 -6.49 16 24 H -0.28 -6.47 7.11 56.52 0.40 -6.07 16 25 H -0.29 -7.06 7.11 56.52 0.40 -6.66 16 26 C 0.17 3.44 3.51 -67.37 -0.24 3.21 16 27 H 0.03 0.59 8.14 -51.93 -0.42 0.17 16 28 C -0.14 -2.45 7.96 37.16 0.30 -2.16 16 29 C -0.13 -2.23 4.86 -26.39 -0.13 -2.36 16 30 H 0.08 0.88 8.14 -51.93 -0.42 0.45 16 31 H 0.08 0.77 8.14 -51.93 -0.42 0.34 16 32 H 0.10 1.27 6.47 -51.93 -0.34 0.93 16 33 H 0.10 0.56 8.14 -51.93 -0.42 0.13 16 34 H 0.07 0.50 8.14 -51.93 -0.42 0.08 16 35 H 0.07 0.29 8.14 -51.93 -0.42 -0.13 16 36 H 0.06 0.40 8.14 -51.93 -0.42 -0.02 16 37 H 0.06 0.38 8.14 -51.93 -0.42 -0.05 16 38 H 0.07 0.28 8.14 -51.93 -0.42 -0.14 16 39 H 0.07 0.48 8.14 -51.93 -0.42 0.06 16 40 H 0.40 5.07 8.40 -40.82 -0.34 4.73 16 41 H 0.06 1.11 8.14 -51.93 -0.42 0.69 16 42 H 0.05 1.07 8.14 -51.93 -0.42 0.65 16 43 H 0.09 2.38 6.13 -51.93 -0.32 2.06 16 44 H 0.02 0.56 8.14 -51.93 -0.42 0.13 16 45 H 0.25 7.10 8.31 -40.82 -0.34 6.76 16 46 H 0.05 0.98 7.44 -51.93 -0.39 0.60 16 47 H 0.04 0.58 8.14 -51.93 -0.42 0.16 16 48 H 0.06 1.27 7.62 -51.93 -0.40 0.87 16 49 H 0.06 1.07 8.14 -51.93 -0.42 0.65 16 50 H 0.06 0.80 8.14 -51.92 -0.42 0.38 16 LS Contribution 398.65 15.07 6.01 6.01 Total: -1.00 -30.94 398.65 -8.46 -39.40 By element: Atomic # 1 Polarization: 11.39 SS G_CDS: -8.40 Total: 2.99 kcal Atomic # 6 Polarization: 4.90 SS G_CDS: -0.93 Total: 3.97 kcal Atomic # 7 Polarization: -56.91 SS G_CDS: -0.23 Total: -57.13 kcal Atomic # 8 Polarization: -11.78 SS G_CDS: 0.12 Total: -11.66 kcal Atomic # 14 Polarization: 21.46 SS G_CDS: -5.03 Total: 16.43 kcal Total LS contribution 6.01 Total: 6.01 kcal Total: -30.94 -8.46 -39.40 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000947791430.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 27.615 kcal (2) G-P(sol) polarization free energy of solvation -30.938 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -3.323 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.459 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.397 kcal (6) G-S(sol) free energy of system = (1) + (5) -11.782 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.26 seconds