Wall clock time and date at job start Tue Mar 31 2020 20:13:42
AMSOL-version 7.1
by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers,
I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget,
B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar
Copyright 2004 by Regents of the University of Minnesota.
All rights reserved.
Notice: recipients of this code are asked to comply
with the user agreement in Section 1 of the documentation file.
*******************************************************************************
* 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION
* - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT)
* GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK
* TLIMIT= - A TIME OF 15. SECONDS REQUESTED
* CHARGE - CHARGE ON SYSTEM= -1
* AM1 - THE AM1 HAMILTONIAN TO BE USED
* DEV - DEVELOPER OPTIONS ARE ALLOWED
* SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED
* - CHARGE MODEL 2 WILL BE USED (CM2A)
* - THE SOLVENT IS USER-SPECIFIED
* DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06
* IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345
* ALPHA - THE SOLVENT ALPHA IS 0.00
* BETA - THE SOLVENT BETA IS 0.00
* GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS
* 38.93 CAL MOL^-1 ANGSTROM^-2
* FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00
* FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00
*******************************************************************************
Atom NO. Chemical Bond length Bond angle Dihedral angle
number (k) symbol (angstroms) (degrees) (degrees)
(I) NA:I NB:NA:I NC:NB:NA:I NA NB NC
1 1 C
2 2 C 1.50700 * 1
3 3 N 1.33696 * 126.27500 * 2 1
4 4 C 1.30620 * 108.99618 * 180.25739 * 3 2 1
5 5 C 1.50701 * 125.42475 * 179.74619 * 4 3 2
6 6 C 1.53002 * 109.46828 * 300.02635 * 5 4 3
7 7 C 1.52999 * 109.47125 * 60.02346 * 5 4 3
8 8 O 1.33671 * 109.15253 * 359.76609 * 4 3 2
9 9 C 1.35341 * 107.68539 * 0.02562 * 8 4 3
10 10 C 1.46717 * 126.64690 * 179.97438 * 9 8 4
11 11 O 1.21681 * 120.00443 * 180.02562 * 10 9 8
12 12 N 1.34781 * 119.99791 * 0.02562 * 10 9 8
13 13 C 1.46503 * 120.00164 * 179.97438 * 12 10 9
14 14 H 1.08995 * 109.45816 * 325.02965 * 13 12 10
15 15 C 1.53041 * 109.45571 * 85.00042 * 13 12 10
16 16 C 1.53191 * 109.30786 * 181.37338 * 15 13 12
17 17 N 1.46926 * 108.77740 * 305.36253 * 16 15 13
18 18 C 1.36936 * 120.63203 * 233.58665 * 17 16 15
19 19 H 1.08006 * 119.99973 * 150.43817 * 18 17 16
20 20 C 1.38804 * 120.00274 * 330.44290 * 18 17 16
21 21 N 1.31620 * 119.99953 * 344.28253 * 20 18 17
22 22 Si 1.86802 * 120.00327 * 164.28812 * 20 18 17
23 23 H 1.48506 * 109.47153 * 266.30453 * 22 20 18
24 24 H 1.48499 * 109.47180 * 26.30176 * 22 20 18
25 25 H 1.48495 * 109.47561 * 146.30394 * 22 20 18
26 26 C 1.46928 * 118.73507 * 53.86244 * 17 16 15
27 27 H 1.08992 * 109.58666 * 65.92743 * 26 17 16
28 28 C 1.53006 * 109.58385 * 186.35236 * 26 17 16
29 29 C 1.53038 * 109.44890 * 205.05816 * 13 12 10
30 30 H 1.09003 * 109.47015 * 270.14134 * 1 2 3
31 31 H 1.09003 * 109.46600 * 30.13477 * 1 2 3
32 32 H 1.08998 * 109.47170 * 150.13655 * 1 2 3
33 33 H 1.08997 * 109.46990 * 180.02562 * 5 4 3
34 34 H 1.08997 * 109.47649 * 60.00019 * 6 5 4
35 35 H 1.09004 * 109.46602 * 180.02562 * 6 5 4
36 36 H 1.08999 * 109.46897 * 299.99661 * 6 5 4
37 37 H 1.08997 * 109.46946 * 60.00026 * 7 5 4
38 38 H 1.08996 * 109.47430 * 180.02562 * 7 5 4
39 39 H 1.09001 * 109.47016 * 300.00316 * 7 5 4
40 40 H 0.96998 * 119.99833 * 359.97438 * 12 10 9
41 41 H 1.08998 * 109.49885 * 61.42353 * 15 13 12
42 42 H 1.08994 * 109.49873 * 301.32113 * 15 13 12
43 43 H 1.09007 * 109.58340 * 185.57893 * 16 15 13
44 44 H 1.08998 * 109.70667 * 65.22581 * 16 15 13
45 45 H 0.97006 * 120.00109 * 179.97438 * 21 20 18
46 46 H 1.09002 * 109.46933 * 60.00456 * 28 26 17
47 47 H 1.09001 * 109.46782 * 179.97438 * 28 26 17
48 48 H 1.08990 * 109.47330 * 299.99895 * 28 26 17
49 49 H 1.08997 * 109.50045 * 298.57886 * 29 13 12
50 50 H 1.09008 * 109.49486 * 58.67183 * 29 13 12
Note: An asterisk (*) indicates this parameter was or will be optimized.
Cartesian coordinates (angstroms)
NO. Atom X Y Z
1 6 0.0000 0.0000 0.0000
2 6 1.5070 0.0000 0.0000
3 7 2.2980 1.0778 0.0000
4 6 3.5453 0.6899 -0.0055
5 6 4.7441 1.6030 -0.0129
6 6 4.7062 2.4843 -1.2631
7 6 4.7192 2.4874 1.2354
8 8 3.5890 -0.6461 -0.0041
9 6 2.3137 -1.0992 0.0020
10 6 1.8826 -2.5016 0.0051
11 8 0.6966 -2.7736 0.0103
12 7 2.8003 -3.4887 0.0023
13 6 2.3700 -4.8891 0.0059
14 1 1.4609 -4.9880 0.5991
15 6 2.0936 -5.3412 -1.4298
16 6 1.6111 -6.7951 -1.4191
17 7 2.6000 -7.6164 -0.7076
18 6 3.1332 -8.7321 -1.2958
19 1 4.1327 -9.0519 -1.0404
20 6 2.3893 -9.4520 -2.2205
21 7 1.0896 -9.2641 -2.3089
22 14 3.2326 -10.6876 -3.3392
23 1 3.5865 -10.0315 -4.6237
24 1 4.4670 -11.1880 -2.6826
25 1 2.3151 -11.8254 -3.6010
26 6 3.0014 -7.2212 0.6494
27 1 2.1512 -7.3174 1.3245
28 6 4.1443 -8.1188 1.1281
29 6 3.4725 -5.7594 0.6133
30 1 -0.3633 0.0025 1.0277
31 1 -0.3633 0.8888 -0.5160
32 1 -0.3633 -0.8912 -0.5117
33 1 5.6558 1.0057 -0.0169
34 1 3.7945 3.0817 -1.2591
35 1 5.5735 3.1445 -1.2686
36 1 4.7239 1.8543 -2.1523
37 1 4.7462 1.8596 2.1260
38 1 5.5860 3.1482 1.2299
39 1 3.8075 3.0847 1.2394
40 1 3.7458 -3.2719 -0.0022
41 1 3.0086 -5.2659 -2.0174
42 1 1.3248 -4.7060 -1.8697
43 1 1.5077 -7.1533 -2.4434
44 1 0.6491 -6.8593 -0.9107
45 1 0.5697 -9.7670 -2.9553
46 1 4.9946 -8.0149 0.4541
47 1 4.4408 -7.8238 2.1346
48 1 3.8120 -9.1568 1.1364
49 1 4.3745 -5.6801 0.0065
50 1 3.6852 -5.4218 1.6277
RHF calculation, no. of doubly occupied orbitals= 64
REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN:
H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987).
REFERENCE FOR CHARGE MODEL 2:
J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885.
REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL:
J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and
D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63
P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted.
CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R
& SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93
& DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV
ZINC000947791430.mol2 50
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
SCF FIELD WAS ACHIEVED
Wall clock time and date at job start Tue Mar 31 2020 20:13:42
Heat of formation + Delta-G solvation = -11.782173 kcal
Electronic energy + Delta-G solvation = -29562.118002 eV
Core-core repulsion = 25590.986449 eV
Total energy + Delta-G solvation = -3971.131553 eV
No. of doubly occupied orbitals = 64
Molecular weight
(most abundant/longest-lived isotopes) = 335.200 amu
Computer time = 1.25 seconds
Orbital eigenvalues (eV)
-43.63729 -39.70083 -37.69276 -36.25362 -35.47817 -34.55904 -32.43994 -31.58515
-30.99485 -29.63573 -27.85336 -27.66309 -26.38791 -25.05155 -24.31909 -22.51363
-21.80423 -21.03290 -20.71749 -20.18087 -19.40616 -18.05673 -17.11980 -16.55440
-16.28040 -15.95251 -15.15139 -14.89521 -14.70487 -14.63113 -14.12281 -13.92558
-13.67881 -13.58947 -13.36837 -13.31576 -13.22471 -12.83285 -12.71431 -12.64091
-12.48663 -12.13602 -11.78125 -11.62359 -11.54959 -11.25311 -11.15542 -11.12096
-10.97275 -10.93039 -10.92273 -10.68663 -10.33724 -10.21564 -10.09882 -10.03057
-9.77210 -9.43164 -9.06614 -8.72858 -8.43876 -6.65648 -5.78229 -3.22708
0.68405 2.17483 2.21945 3.09120 3.17472 3.37214 3.44172 3.45394
3.61670 4.34119 4.48191 4.48624 4.53076 4.63695 4.81305 5.15668
5.17570 5.23305 5.28073 5.34749 5.35237 5.40068 5.41687 5.48048
5.53562 5.55589 5.69466 5.72762 5.75006 5.75634 5.85696 5.94597
6.12187 6.14730 6.22015 6.29470 6.35417 6.39682 6.47224 6.59913
6.75279 6.80834 7.00468 7.08011 7.31873 7.36461 7.57982 7.67361
7.82042 8.12866 8.46036 9.21257 9.84668 10.41930 11.30392
Molecular weight = 335.20amu
Principal moments of inertia in cm(-1)
A = 0.018828 B = 0.002446 C = 0.002383
Principal moments of inertia in units of 10**(-40)*gram-cm**2
A = 1486.790709 B =11442.345181 C =11749.003527
Net atomic charges, atomic populations, and dipole contributions
calculated with CM2
Atom NO. Type Charge No. of electrons
1 C -0.080 4.080
2 C 0.077 3.923
3 N -0.483 5.483
4 C 0.219 3.781
5 C 0.001 3.999
6 C -0.144 4.144
7 C -0.144 4.144
8 O -0.188 6.188
9 C -0.114 4.114
10 C 0.605 3.395
11 O -0.512 6.512
12 N -0.710 5.710
13 C 0.150 3.850
14 H 0.086 0.914
15 C -0.147 4.147
16 C 0.175 3.825
17 N -0.588 5.588
18 C -0.252 4.252
19 H 0.070 0.930
20 C 0.003 3.997
21 N -0.902 5.902
22 Si 0.901 3.099
23 H -0.288 1.288
24 H -0.279 1.279
25 H -0.292 1.292
26 C 0.172 3.828
27 H 0.028 0.972
28 C -0.135 4.135
29 C -0.134 4.134
30 H 0.081 0.919
31 H 0.075 0.925
32 H 0.097 0.903
33 H 0.100 0.900
34 H 0.070 0.930
35 H 0.073 0.927
36 H 0.060 0.940
37 H 0.059 0.941
38 H 0.073 0.927
39 H 0.070 0.930
40 H 0.399 0.601
41 H 0.056 0.944
42 H 0.054 0.946
43 H 0.089 0.911
44 H 0.022 0.978
45 H 0.254 0.746
46 H 0.053 0.947
47 H 0.038 0.962
48 H 0.063 0.937
49 H 0.064 0.936
50 H 0.055 0.945
For the charges calculated by CM2:
Dipole moment (debyes) X Y Z Total
from point charges 7.424 22.321 6.034 24.285
Note: The Mulliken population analysis charges presented below were not
used in the solvation calculation but are provided for completeness.
The chosen solvation model uses CM2 partial charges for calculating
solvation energies.
Net atomic charges, atomic populations, and dipole contributions
using Mulliken population analysis
Atom NO. Type Charge No. of electrons
1 C -0.137 4.137
2 C -0.047 4.047
3 N -0.212 5.212
4 C 0.013 3.987
5 C -0.019 4.019
6 C -0.202 4.202
7 C -0.202 4.202
8 O -0.075 6.075
9 C -0.169 4.169
10 C 0.389 3.611
11 O -0.390 6.390
12 N -0.359 5.359
13 C 0.047 3.953
14 H 0.104 0.896
15 C -0.187 4.187
16 C 0.049 3.951
17 N -0.311 5.311
18 C -0.381 4.381
19 H 0.088 0.912
20 C -0.196 4.196
21 N -0.546 5.546
22 Si 0.731 3.269
23 H -0.216 1.216
24 H -0.204 1.204
25 H -0.218 1.218
26 C 0.064 3.936
27 H 0.046 0.954
28 C -0.193 4.193
29 C -0.174 4.174
30 H 0.099 0.901
31 H 0.094 0.906
32 H 0.115 0.885
33 H 0.119 0.881
34 H 0.090 0.910
35 H 0.092 0.908
36 H 0.079 0.921
37 H 0.079 0.921
38 H 0.092 0.908
39 H 0.089 0.911
40 H 0.233 0.767
41 H 0.074 0.926
42 H 0.072 0.928
43 H 0.107 0.893
44 H 0.040 0.960
45 H 0.064 0.936
46 H 0.072 0.928
47 H 0.057 0.943
48 H 0.082 0.918
49 H 0.083 0.917
50 H 0.074 0.926
Dipole moment (debyes) X Y Z Total
from point charges 6.326 22.560 5.940 24.171
hybrid contribution 1.095 -1.209 -0.681 1.768
sum 7.422 21.350 5.259 23.207
Atomic orbital electron populations
1.20388 0.85242 1.04411 1.03671 1.22073 0.98352 0.86365 0.97927
1.70259 1.00260 1.31045 1.19662 1.26537 0.95671 0.79215 0.97242
1.19761 0.90439 0.93144 0.98552 1.21853 1.03526 0.99416 0.95408
1.21848 1.03535 0.99371 0.95399 1.84447 1.29952 1.23681 1.69437
1.23128 0.81119 0.96606 1.16070 1.16341 0.86074 0.81158 0.77511
1.90870 1.15644 1.81651 1.50815 1.46282 1.09328 1.07021 1.73293
1.21175 0.98531 0.76964 0.98607 0.89628 1.22590 1.00957 1.00758
0.94430 1.20738 0.90201 0.84743 0.99420 1.44190 1.49089 1.27421
1.10385 1.19175 0.96551 1.02307 1.20109 0.91209 1.25113 0.94891
0.97928 1.01652 1.70026 1.04282 1.43528 1.36739 0.86307 0.78676
0.80798 0.81146 1.21551 1.20411 1.21807 1.20445 0.94935 0.89905
0.88309 0.95398 1.21786 0.98405 1.00758 0.98315 1.22472 0.97809
0.97904 0.99248 0.90078 0.90605 0.88459 0.88146 0.91045 0.90761
0.92090 0.92140 0.90764 0.91057 0.76703 0.92568 0.92762 0.89278
0.96008 0.93633 0.92790 0.94299 0.91764 0.91697 0.92630
Number of geometries 1
Number of calculations of the screened coulomb radii 1
The total number of SCF iterations 17.
Note: The number of geometries may not
correspond to the number of cycles due to rejected geometry changes.
In the following table subtotal= G_P + SS G_CDS.
Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M
number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value
1 C -0.08 -0.94 9.87 36.01 0.36 -0.59 16
2 C 0.08 1.05 7.16 -82.46 -0.59 0.46 16
3 N -0.48 -6.14 11.26 -7.07 -0.08 -6.22 16
4 C 0.22 2.44 6.82 -12.79 -0.09 2.36 16
5 C 0.00 0.00 3.39 -91.77 -0.31 -0.31 16
6 C -0.14 -0.87 9.18 37.16 0.34 -0.53 16
7 C -0.14 -0.84 9.18 37.16 0.34 -0.50 16
8 O -0.19 -2.39 10.57 4.42 0.05 -2.34 16
9 C -0.11 -1.63 7.18 -36.84 -0.26 -1.90 16
10 C 0.60 9.61 7.75 -12.83 -0.10 9.51 16
11 O -0.51 -9.40 14.46 5.21 0.08 -9.32 16
12 N -0.71 -10.57 5.07 -55.06 -0.28 -10.85 16
13 C 0.15 2.60 2.41 -67.89 -0.16 2.43 16
14 H 0.09 1.63 7.57 -51.93 -0.39 1.24 16
15 C -0.15 -2.90 5.65 -26.61 -0.15 -3.05 16
16 C 0.18 4.18 5.28 -3.71 -0.02 4.16 16
17 N -0.59 -14.20 2.98 -164.52 -0.49 -14.69 16
18 C -0.25 -6.63 8.57 -15.06 -0.13 -6.76 16
19 H 0.07 1.79 6.24 -52.48 -0.33 1.46 16
20 C 0.00 0.08 4.93 -17.43 -0.09 0.00 16
21 N -0.90 -25.99 11.23 55.49 0.62 -25.37 16
22 Si 0.90 21.46 29.58 -169.99 -5.03 16.43 16
23 H -0.29 -6.90 7.11 56.52 0.40 -6.49 16
24 H -0.28 -6.47 7.11 56.52 0.40 -6.07 16
25 H -0.29 -7.06 7.11 56.52 0.40 -6.66 16
26 C 0.17 3.44 3.51 -67.37 -0.24 3.21 16
27 H 0.03 0.59 8.14 -51.93 -0.42 0.17 16
28 C -0.14 -2.45 7.96 37.16 0.30 -2.16 16
29 C -0.13 -2.23 4.86 -26.39 -0.13 -2.36 16
30 H 0.08 0.88 8.14 -51.93 -0.42 0.45 16
31 H 0.08 0.77 8.14 -51.93 -0.42 0.34 16
32 H 0.10 1.27 6.47 -51.93 -0.34 0.93 16
33 H 0.10 0.56 8.14 -51.93 -0.42 0.13 16
34 H 0.07 0.50 8.14 -51.93 -0.42 0.08 16
35 H 0.07 0.29 8.14 -51.93 -0.42 -0.13 16
36 H 0.06 0.40 8.14 -51.93 -0.42 -0.02 16
37 H 0.06 0.38 8.14 -51.93 -0.42 -0.05 16
38 H 0.07 0.28 8.14 -51.93 -0.42 -0.14 16
39 H 0.07 0.48 8.14 -51.93 -0.42 0.06 16
40 H 0.40 5.07 8.40 -40.82 -0.34 4.73 16
41 H 0.06 1.11 8.14 -51.93 -0.42 0.69 16
42 H 0.05 1.07 8.14 -51.93 -0.42 0.65 16
43 H 0.09 2.38 6.13 -51.93 -0.32 2.06 16
44 H 0.02 0.56 8.14 -51.93 -0.42 0.13 16
45 H 0.25 7.10 8.31 -40.82 -0.34 6.76 16
46 H 0.05 0.98 7.44 -51.93 -0.39 0.60 16
47 H 0.04 0.58 8.14 -51.93 -0.42 0.16 16
48 H 0.06 1.27 7.62 -51.93 -0.40 0.87 16
49 H 0.06 1.07 8.14 -51.93 -0.42 0.65 16
50 H 0.06 0.80 8.14 -51.92 -0.42 0.38 16
LS Contribution 398.65 15.07 6.01 6.01
Total: -1.00 -30.94 398.65 -8.46 -39.40
By element:
Atomic # 1 Polarization: 11.39 SS G_CDS: -8.40 Total: 2.99 kcal
Atomic # 6 Polarization: 4.90 SS G_CDS: -0.93 Total: 3.97 kcal
Atomic # 7 Polarization: -56.91 SS G_CDS: -0.23 Total: -57.13 kcal
Atomic # 8 Polarization: -11.78 SS G_CDS: 0.12 Total: -11.66 kcal
Atomic # 14 Polarization: 21.46 SS G_CDS: -5.03 Total: 16.43 kcal
Total LS contribution 6.01 Total: 6.01 kcal
Total: -30.94 -8.46 -39.40 kcal
The number of atoms in the molecule is 50
The average number of expansion shells was 16.00
The maximum number of expansion shells was 16
The minimum number of expansion shells was 16
**** NOTA BENE ****
This is the net solvation energy for this exact molecular structure
(nuclear and electronic)! The standard-state solvation energy should be
obtained as the difference between the heat of formation plus delta-G solvation
for the relaxed solvated system and that for the relaxed gas-phase system.
ZINC000947791430.mol2 50
1SCF run
This is a breakdown of the solvation energy calculated
without geometric relaxation in solution:
(1) E-EN(sol) electronic-nuclear energy of solute 27.615 kcal
(2) G-P(sol) polarization free energy of solvation -30.938 kcal
(3) G-ENP(sol) elect.-nuc.-pol. free energy of system -3.323 kcal
(4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.459 kcal
(5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.397 kcal
(6) G-S(sol) free energy of system = (1) + (5) -11.782 kcal
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
Total computer time = 1.26 seconds