Wall clock time and date at job start Tue Mar 31 2020 19:00:30 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 C 1.53007 * 109.46953 * 2 1 4 4 C 1.52994 * 109.47215 * 240.00139 * 2 1 3 5 5 C 1.50703 * 109.47174 * 119.99770 * 2 1 3 6 6 N 1.29938 * 125.37562 * 60.00201 * 5 2 1 7 7 C 1.36064 * 108.47328 * 179.97438 * 6 5 2 8 8 C 1.47420 * 126.44579 * 179.97438 * 7 6 5 9 9 O 1.21616 * 120.00031 * 180.02562 * 8 7 6 10 10 N 1.34775 * 119.99917 * 0.02562 * 8 7 6 11 11 C 1.46504 * 119.99904 * 179.97438 * 10 8 7 12 12 H 1.09002 * 110.88589 * 34.29587 * 11 10 8 13 13 C 1.54909 * 111.00462 * 270.41314 * 11 10 8 14 14 N 1.47423 * 104.83351 * 278.90063 * 13 11 10 15 15 C 1.36941 * 125.64722 * 155.83675 * 14 13 11 16 16 H 1.07999 * 119.99423 * 180.02562 * 15 14 13 17 17 C 1.38813 * 119.99890 * 0.02562 * 15 14 13 18 18 N 1.31612 * 120.00356 * 359.97438 * 17 15 14 19 19 Si 1.86798 * 119.99751 * 180.02562 * 17 15 14 20 20 H 1.48495 * 109.47326 * 89.99405 * 19 17 15 21 21 H 1.48498 * 109.47319 * 209.99946 * 19 17 15 22 22 H 1.48507 * 109.46944 * 329.99659 * 19 17 15 23 23 C 1.47016 * 108.70440 * 335.86643 * 14 13 11 24 24 C 1.54383 * 107.28804 * 1.09781 * 23 14 13 25 25 C 1.52996 * 110.70268 * 263.79009 * 24 23 14 26 26 C 1.53000 * 110.75708 * 140.50279 * 24 23 14 27 27 C 1.36093 * 107.10625 * 0.22769 * 7 6 5 28 28 O 1.34052 * 125.37712 * 239.95710 * 5 2 1 29 29 H 1.09001 * 109.46661 * 300.00114 * 1 2 3 30 30 H 1.09000 * 109.47225 * 60.00033 * 1 2 3 31 31 H 1.08999 * 109.46793 * 180.02562 * 1 2 3 32 32 H 1.09007 * 109.46851 * 180.02562 * 3 2 1 33 33 H 1.08996 * 109.47370 * 299.99568 * 3 2 1 34 34 H 1.08997 * 109.47074 * 60.00608 * 3 2 1 35 35 H 1.08999 * 109.47092 * 299.99636 * 4 2 1 36 36 H 1.09000 * 109.47165 * 59.99791 * 4 2 1 37 37 H 1.08997 * 109.47438 * 179.97438 * 4 2 1 38 38 H 0.96994 * 120.00442 * 359.97438 * 10 8 7 39 39 H 1.09000 * 110.36449 * 37.73705 * 13 11 10 40 40 H 1.09002 * 110.36898 * 160.05636 * 13 11 10 41 41 H 0.96997 * 120.00659 * 179.97438 * 18 17 15 42 42 H 1.09000 * 109.88531 * 120.47268 * 23 14 13 43 43 H 1.08996 * 109.88671 * 241.49081 * 23 14 13 44 44 H 1.09000 * 109.47322 * 173.48481 * 25 24 23 45 45 H 1.08995 * 109.47541 * 293.48947 * 25 24 23 46 46 H 1.09003 * 109.47122 * 53.48885 * 25 24 23 47 47 H 1.09001 * 109.47041 * 306.48734 * 26 24 23 48 48 H 1.09005 * 109.47043 * 66.48228 * 26 24 23 49 49 H 1.08994 * 109.46599 * 186.48184 * 26 24 23 50 50 H 1.08000 * 126.52327 * 179.77415 * 27 7 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4426 0.0000 4 6 2.0400 -0.7212 -1.2492 5 6 2.0324 -0.7104 1.2305 6 7 1.7837 -1.9479 1.5389 7 6 2.4046 -2.2320 2.7158 8 6 2.3838 -3.5228 3.4277 9 8 2.9833 -3.6475 4.4784 10 7 1.7004 -4.5647 2.9140 11 6 1.6801 -5.8476 3.6211 12 1 1.6923 -5.6966 4.7005 13 6 2.8589 -6.7473 3.1730 14 7 2.4089 -7.3567 1.9083 15 6 3.2250 -7.8363 0.9187 16 1 2.7957 -8.2659 0.0257 17 6 4.6040 -7.7702 1.0635 18 7 5.1271 -7.2462 2.1516 19 14 5.7172 -8.4237 -0.2867 20 1 6.0154 -7.3357 -1.2523 21 1 6.9842 -8.9160 0.3113 22 1 5.0368 -9.5392 -0.9926 23 6 0.9389 -7.3637 1.8851 24 6 0.4563 -6.6996 3.1925 25 6 0.1360 -7.7576 4.2503 26 6 -0.7593 -5.8080 2.9312 27 6 3.0438 -1.0988 3.1150 28 8 2.8070 -0.1656 2.1793 29 1 -0.3633 0.5139 0.8900 30 1 -0.3634 0.5138 -0.8900 31 1 -0.3633 -1.0277 0.0005 32 1 3.1301 1.4426 -0.0005 33 1 1.6767 1.9564 -0.8900 34 1 1.6767 1.9563 0.8900 35 1 1.6767 -1.7489 -1.2492 36 1 1.6767 -0.2074 -2.1392 37 1 3.1300 -0.7208 -1.2495 38 1 1.2219 -4.4652 2.0761 39 1 3.7531 -6.1464 3.0074 40 1 3.0519 -7.5189 3.9183 41 1 6.0907 -7.2003 2.2529 42 1 0.5790 -6.7960 1.0270 43 1 0.5738 -8.3893 1.8304 44 1 -0.0904 -7.2676 5.1973 45 1 -0.7252 -8.3434 3.9292 46 1 0.9957 -8.4155 4.3781 47 1 -0.5266 -5.1007 2.1351 48 1 -1.6057 -6.4262 2.6319 49 1 -1.0114 -5.2620 3.8402 50 1 3.6318 -0.9747 4.0123 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000974592814.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 19:00:30 Heat of formation + Delta-G solvation = -23.604545 kcal Electronic energy + Delta-G solvation = -30569.108263 eV Core-core repulsion = 26597.464054 eV Total energy + Delta-G solvation = -3971.644209 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 335.200 amu Computer time = 1.34 seconds Orbital eigenvalues (eV) -44.52486 -41.17091 -39.41687 -37.94297 -35.91298 -35.66299 -34.44794 -32.62745 -31.04431 -29.83587 -28.28769 -28.22410 -28.06705 -27.44969 -25.79080 -24.52814 -24.12975 -22.34793 -21.49395 -20.77093 -19.98073 -18.90025 -18.71995 -17.88564 -17.51936 -17.43683 -16.63612 -16.25118 -15.86688 -15.71785 -15.39498 -15.36402 -14.97679 -14.92483 -14.67954 -14.45098 -14.17280 -13.76837 -13.68431 -13.25813 -13.08834 -13.05730 -13.02581 -12.89807 -12.65374 -12.61868 -12.60184 -12.58369 -12.40584 -12.13489 -12.05922 -11.96265 -11.83682 -11.79852 -11.74659 -11.49367 -11.39555 -11.24309 -10.78258 -10.18694 -9.91873 -8.86279 -7.77020 -5.22050 0.05128 0.95543 1.41931 1.44117 1.50268 1.53009 2.05848 2.29004 2.47197 2.75127 3.32463 3.52654 3.63132 3.67898 3.69404 3.88698 3.94001 3.95511 4.05175 4.06958 4.38511 4.42440 4.49114 4.55361 4.67804 4.73021 4.75289 4.81979 4.83938 4.84969 4.89371 4.90107 4.95175 4.95887 5.01219 5.07404 5.09551 5.17959 5.26104 5.27838 5.30442 5.34133 5.39062 5.45764 5.51056 5.63607 5.80464 6.29060 6.32696 6.61150 7.07771 7.13233 7.77496 8.41402 9.23758 Molecular weight = 335.20amu Principal moments of inertia in cm(-1) A = 0.009918 B = 0.003990 C = 0.003435 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2822.479412 B = 7015.065447 C = 8148.936998 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.135 4.135 2 C 0.031 3.969 3 C -0.143 4.143 4 C -0.140 4.140 5 C 0.207 3.793 6 N -0.476 5.476 7 C -0.096 4.096 8 C 0.594 3.406 9 O -0.575 6.575 10 N -0.677 5.677 11 C 0.133 3.867 12 H 0.087 0.913 13 C 0.156 3.844 14 N -0.618 5.618 15 C -0.234 4.234 16 H 0.083 0.917 17 C -0.068 4.068 18 N -0.949 5.949 19 Si 0.977 3.023 20 H -0.289 1.289 21 H -0.296 1.296 22 H -0.266 1.266 23 C 0.139 3.861 24 C -0.073 4.073 25 C -0.125 4.125 26 C -0.123 4.123 27 C 0.021 3.979 28 O -0.189 6.189 29 H 0.060 0.940 30 H 0.100 0.900 31 H 0.055 0.945 32 H 0.057 0.943 33 H 0.098 0.902 34 H 0.065 0.935 35 H 0.051 0.949 36 H 0.103 0.897 37 H 0.049 0.951 38 H 0.409 0.591 39 H 0.067 0.933 40 H -0.008 1.008 41 H 0.243 0.757 42 H 0.028 0.972 43 H 0.030 0.970 44 H 0.071 0.929 45 H 0.081 0.919 46 H 0.036 0.964 47 H 0.049 0.951 48 H 0.080 0.920 49 H 0.065 0.935 50 H 0.254 0.746 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -13.324 17.650 -3.049 22.324 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.193 4.193 2 C 0.030 3.970 3 C -0.200 4.200 4 C -0.198 4.198 5 C -0.003 4.003 6 N -0.205 5.205 7 C -0.215 4.215 8 C 0.381 3.619 9 O -0.456 6.456 10 N -0.326 5.326 11 C 0.027 3.973 12 H 0.105 0.895 13 C 0.029 3.971 14 N -0.344 5.344 15 C -0.363 4.363 16 H 0.101 0.899 17 C -0.260 4.260 18 N -0.599 5.599 19 Si 0.806 3.194 20 H -0.216 1.216 21 H -0.223 1.223 22 H -0.191 1.191 23 C 0.014 3.986 24 C -0.074 4.074 25 C -0.182 4.182 26 C -0.180 4.180 27 C -0.054 4.054 28 O -0.075 6.075 29 H 0.080 0.920 30 H 0.119 0.881 31 H 0.074 0.926 32 H 0.076 0.924 33 H 0.117 0.883 34 H 0.084 0.916 35 H 0.070 0.930 36 H 0.121 0.879 37 H 0.068 0.932 38 H 0.245 0.755 39 H 0.085 0.915 40 H 0.010 0.990 41 H 0.053 0.947 42 H 0.046 0.954 43 H 0.048 0.952 44 H 0.090 0.910 45 H 0.100 0.900 46 H 0.055 0.945 47 H 0.068 0.932 48 H 0.099 0.901 49 H 0.084 0.916 50 H 0.270 0.730 Dipole moment (debyes) X Y Z Total from point charges -13.095 17.073 -2.739 21.690 hybrid contribution 1.649 -0.515 -0.189 1.738 sum -11.446 16.558 -2.928 20.341 Atomic orbital electron populations 1.21906 0.90299 1.03056 1.04034 1.19472 0.97424 0.95295 0.84843 1.21929 1.01610 0.92049 1.04419 1.21935 1.01046 1.00692 0.96117 1.27128 0.91724 0.88227 0.93264 1.70661 1.22978 1.14605 1.12226 1.21710 1.06591 0.96820 0.96341 1.17062 0.78433 0.82660 0.83748 1.90765 1.45889 1.84397 1.24510 1.45538 1.50798 1.10103 1.26113 1.22333 0.96885 0.82343 0.95771 0.89521 1.21940 0.95958 0.93114 0.86053 1.44674 1.01046 1.70842 1.17811 1.19448 0.88079 1.31698 0.97075 0.89888 1.25622 0.98126 1.02369 0.99899 1.70108 1.09877 1.51633 1.28259 0.85090 0.78118 0.78003 0.78218 1.21589 1.22279 1.19052 1.21636 0.83763 0.97701 0.95498 1.21843 0.94146 0.95724 0.95697 1.21682 1.01501 0.97353 0.97681 1.21669 0.95887 0.98690 1.01801 1.25697 0.99616 0.85498 0.94549 1.84405 1.54375 1.40427 1.28283 0.92049 0.88096 0.92624 0.92380 0.88287 0.91553 0.93012 0.87853 0.93156 0.75454 0.91470 0.99029 0.94748 0.95422 0.95247 0.91042 0.90011 0.94481 0.93155 0.90099 0.91565 0.73006 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.89 8.46 71.98 0.61 -1.28 16 2 C 0.03 0.53 0.99 -52.93 -0.05 0.48 16 3 C -0.14 -1.72 8.01 71.98 0.58 -1.14 16 4 C -0.14 -2.44 8.45 71.98 0.61 -1.84 16 5 C 0.21 5.29 6.44 88.39 0.57 5.86 16 6 N -0.48 -15.14 11.05 -293.03 -3.24 -18.38 16 7 C -0.10 -3.32 6.99 40.41 0.28 -3.04 16 8 C 0.59 24.41 7.81 86.66 0.68 25.09 16 9 O -0.57 -26.54 16.58 -4.08 -0.07 -26.61 16 10 N -0.68 -26.96 4.62 -439.20 -2.03 -28.99 16 11 C 0.13 5.47 2.61 46.38 0.12 5.59 16 12 H 0.09 3.60 7.53 -2.39 -0.02 3.58 16 13 C 0.16 8.26 5.27 86.86 0.46 8.72 16 14 N -0.62 -32.57 3.39 -691.89 -2.35 -34.92 16 15 C -0.23 -13.47 10.27 84.03 0.86 -12.61 16 16 H 0.08 4.54 7.83 -2.91 -0.02 4.52 16 17 C -0.07 -4.01 5.49 84.86 0.47 -3.54 16 18 N -0.95 -60.02 10.09 21.65 0.22 -59.80 16 19 Si 0.98 47.53 29.55 68.60 2.03 49.56 16 20 H -0.29 -13.86 7.11 99.48 0.71 -13.16 16 21 H -0.30 -14.55 7.11 99.48 0.71 -13.84 16 22 H -0.27 -12.10 7.11 99.48 0.71 -11.40 16 23 C 0.14 5.70 6.41 86.75 0.56 6.25 16 24 C -0.07 -2.45 0.81 -50.97 -0.04 -2.49 16 25 C -0.12 -3.67 8.41 71.98 0.61 -3.07 16 26 C -0.12 -3.17 8.08 71.98 0.58 -2.59 16 27 C 0.02 0.57 11.95 67.32 0.80 1.38 16 28 O -0.19 -4.75 10.11 0.33 0.00 -4.75 16 29 H 0.06 0.84 8.14 -2.39 -0.02 0.82 16 30 H 0.10 0.84 8.14 -2.39 -0.02 0.82 16 31 H 0.05 0.98 8.14 -2.39 -0.02 0.96 16 32 H 0.06 0.79 8.14 -2.38 -0.02 0.77 16 33 H 0.10 0.68 8.14 -2.39 -0.02 0.66 16 34 H 0.07 0.78 8.14 -2.39 -0.02 0.76 16 35 H 0.05 1.13 8.14 -2.39 -0.02 1.11 16 36 H 0.10 1.13 8.14 -2.39 -0.02 1.11 16 37 H 0.05 0.97 8.14 -2.39 -0.02 0.95 16 38 H 0.41 15.55 6.75 -92.71 -0.63 14.93 16 39 H 0.07 4.21 5.87 -2.39 -0.01 4.20 16 40 H -0.01 -0.46 7.81 -2.39 -0.02 -0.48 16 41 H 0.24 15.08 8.31 -92.71 -0.77 14.31 16 42 H 0.03 1.11 7.77 -2.39 -0.02 1.09 16 43 H 0.03 1.19 7.85 -2.39 -0.02 1.17 16 44 H 0.07 1.82 8.14 -2.39 -0.02 1.80 16 45 H 0.08 1.98 8.14 -2.39 -0.02 1.96 16 46 H 0.04 1.29 7.58 -2.39 -0.02 1.27 16 47 H 0.05 1.35 6.42 -2.39 -0.02 1.33 16 48 H 0.08 1.71 8.14 -2.38 -0.02 1.69 16 49 H 0.07 1.57 8.14 -2.39 -0.02 1.55 16 50 H 0.25 5.43 8.06 -2.91 -0.02 5.41 16 Total: -1.00 -76.77 400.78 2.55 -74.22 By element: Atomic # 1 Polarization: 27.59 SS G_CDS: 0.30 Total: 27.89 kcal Atomic # 6 Polarization: 14.09 SS G_CDS: 7.68 Total: 21.77 kcal Atomic # 7 Polarization: -134.69 SS G_CDS: -7.40 Total: -142.09 kcal Atomic # 8 Polarization: -31.29 SS G_CDS: -0.06 Total: -31.36 kcal Atomic # 14 Polarization: 47.53 SS G_CDS: 2.03 Total: 49.56 kcal Total: -76.77 2.55 -74.22 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000974592814.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 50.616 kcal (2) G-P(sol) polarization free energy of solvation -76.773 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -26.157 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.553 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -74.221 kcal (6) G-S(sol) free energy of system = (1) + (5) -23.605 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.34 seconds