Wall clock time and date at job start Tue Mar 31 2020 19:00:36 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 C 1.53006 * 109.47025 * 2 1 4 4 C 1.52997 * 109.47016 * 119.99737 * 2 1 3 5 5 C 1.50698 * 109.46856 * 240.00173 * 2 1 3 6 6 N 1.29933 * 125.38110 * 59.72114 * 5 2 1 7 7 C 1.36068 * 108.47552 * 179.83927 * 6 5 2 8 8 C 1.47425 * 126.44619 * 180.19979 * 7 6 5 9 9 O 1.21616 * 119.99813 * 180.28528 * 8 7 6 10 10 N 1.34779 * 120.00021 * 0.27600 * 8 7 6 11 11 C 1.46499 * 119.99640 * 179.97438 * 10 8 7 12 12 H 1.08997 * 110.89117 * 328.89095 * 11 10 8 13 13 C 1.54918 * 111.00204 * 92.81042 * 11 10 8 14 14 N 1.47423 * 104.83030 * 81.06157 * 13 11 10 15 15 C 1.36939 * 125.64751 * 204.08233 * 14 13 11 16 16 H 1.08000 * 120.00338 * 169.99640 * 15 14 13 17 17 C 1.38811 * 119.99743 * 349.99667 * 15 14 13 18 18 N 1.31619 * 120.00653 * 350.42302 * 17 15 14 19 19 Si 1.86801 * 119.99979 * 170.41873 * 17 15 14 20 20 H 1.48500 * 109.47367 * 94.13916 * 19 17 15 21 21 H 1.48497 * 109.47638 * 214.14168 * 19 17 15 22 22 H 1.48503 * 109.47202 * 334.14476 * 19 17 15 23 23 C 1.47023 * 108.70402 * 24.12766 * 14 13 11 24 24 C 1.54320 * 107.27058 * 358.94360 * 23 14 13 25 25 C 1.53010 * 110.71751 * 219.44361 * 24 23 14 26 26 C 1.52991 * 110.72286 * 96.16778 * 24 23 14 27 27 C 1.36089 * 107.10247 * 0.41524 * 7 6 5 28 28 O 1.34056 * 125.37437 * 240.01987 * 5 2 1 29 29 H 1.09002 * 109.47361 * 59.99944 * 1 2 3 30 30 H 1.08995 * 109.47422 * 180.02562 * 1 2 3 31 31 H 1.09001 * 109.47067 * 300.00314 * 1 2 3 32 32 H 1.08992 * 109.47184 * 59.99811 * 3 2 1 33 33 H 1.08997 * 109.47039 * 179.97438 * 3 2 1 34 34 H 1.09004 * 109.46635 * 299.99976 * 3 2 1 35 35 H 1.08999 * 109.46762 * 60.00582 * 4 2 1 36 36 H 1.09007 * 109.46951 * 180.02562 * 4 2 1 37 37 H 1.08992 * 109.47204 * 300.00195 * 4 2 1 38 38 H 0.96999 * 119.99643 * 0.02562 * 10 8 7 39 39 H 1.09002 * 110.36520 * 199.90216 * 13 11 10 40 40 H 1.08999 * 110.36273 * 322.22193 * 13 11 10 41 41 H 0.96994 * 120.00514 * 179.97438 * 18 17 15 42 42 H 1.08992 * 109.88183 * 239.51865 * 23 14 13 43 43 H 1.09007 * 109.88016 * 118.35623 * 23 14 13 44 44 H 1.08993 * 109.47213 * 173.52467 * 25 24 23 45 45 H 1.09006 * 109.46514 * 293.51853 * 25 24 23 46 46 H 1.09001 * 109.46842 * 53.51682 * 25 24 23 47 47 H 1.09000 * 109.47404 * 306.47400 * 26 24 23 48 48 H 1.09006 * 109.46854 * 66.47686 * 26 24 23 49 49 H 1.09003 * 109.47523 * 186.47120 * 26 24 23 50 50 H 1.08005 * 126.52107 * 179.78600 * 27 7 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4426 0.0000 4 6 2.0400 -0.7212 1.2493 5 6 2.0323 -0.7104 -1.2305 6 7 1.7794 -0.3617 -2.4564 7 6 2.4044 -1.2360 -3.2909 8 6 2.3846 -1.2062 -4.7648 9 8 2.9840 -2.0539 -5.3981 10 7 1.7023 -0.2396 -5.4102 11 6 1.6832 -0.2098 -6.8748 12 1 2.6109 -0.6099 -7.2838 13 6 0.4555 -0.9744 -7.4298 14 7 -0.6629 -0.0197 -7.3242 15 6 -1.9895 -0.3501 -7.2459 16 1 -2.7218 0.4077 -7.0097 17 6 -2.3931 -1.6592 -7.4702 18 7 -1.5363 -2.5408 -7.9403 19 14 -4.1524 -2.1698 -7.1048 20 1 -4.9664 -2.0622 -8.3422 21 1 -4.1702 -3.5737 -6.6212 22 1 -4.7195 -1.2793 -6.0604 23 6 -0.1182 1.3458 -7.3181 24 6 1.4183 1.2265 -7.3984 25 6 2.0897 2.2640 -6.4960 26 6 1.8979 1.3728 -8.8438 27 6 3.0470 -2.1458 -2.5091 28 8 2.8059 -1.8052 -1.2331 29 1 -0.3634 0.5138 -0.8900 30 1 -0.3634 -1.0276 0.0005 31 1 -0.3633 0.5139 0.8900 32 1 1.6767 1.9564 0.8899 33 1 3.1300 1.4426 0.0005 34 1 1.6766 1.9563 -0.8900 35 1 1.6767 -1.7488 1.2492 36 1 3.1300 -0.7208 1.2495 37 1 1.6766 -0.2074 2.1392 38 1 1.2245 0.4366 -4.9050 39 1 0.6204 -1.2521 -8.4708 40 1 0.2562 -1.8604 -6.8269 41 1 -1.8182 -3.4556 -8.0966 42 1 -0.4030 1.8544 -6.3972 43 1 -0.4926 1.8982 -8.1801 44 1 3.1652 2.0885 -6.4784 45 1 1.8909 3.2639 -6.8818 46 1 1.6909 2.1786 -5.4852 47 1 1.3650 0.6634 -9.4770 48 1 1.7024 2.3876 -9.1905 49 1 2.9681 1.1718 -8.8937 50 1 3.6388 -2.9824 -2.8503 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000974592815.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 19:00:36 Heat of formation + Delta-G solvation = -2.800125 kcal Electronic energy + Delta-G solvation = -30500.037872 eV Core-core repulsion = 26529.295810 eV Total energy + Delta-G solvation = -3970.742062 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 335.200 amu Computer time = 1.15 seconds Orbital eigenvalues (eV) -43.44637 -39.61061 -37.85135 -37.19849 -34.74315 -33.74945 -32.91822 -30.68893 -29.89506 -28.14508 -27.64614 -27.55782 -26.81456 -25.58801 -24.28272 -23.34975 -22.77350 -20.77609 -19.97190 -19.56315 -18.62775 -17.68078 -16.81469 -16.65487 -16.32415 -15.81795 -15.38704 -14.71103 -14.47830 -14.34083 -14.15013 -13.97107 -13.80028 -13.65863 -13.38161 -13.13277 -12.65648 -12.62854 -12.55654 -12.11728 -11.96272 -11.90786 -11.87954 -11.72575 -11.48542 -11.32274 -11.28368 -11.23322 -11.07011 -10.84619 -10.75910 -10.70902 -10.38024 -10.17837 -9.99155 -9.86359 -9.73551 -9.65705 -8.99521 -8.55284 -8.36686 -6.73777 -5.69181 -3.01982 1.19559 2.10813 2.50919 3.41712 3.42758 3.47522 3.49673 3.65397 3.80767 4.46297 4.52992 4.55466 4.66135 4.92701 5.00693 5.05329 5.26601 5.29170 5.33143 5.34683 5.38521 5.45784 5.54297 5.55342 5.59778 5.64819 5.67127 5.69962 5.81459 5.84014 5.93728 5.98142 6.02973 6.06478 6.11413 6.15634 6.23282 6.32377 6.43412 6.55483 6.63379 6.74309 6.78426 7.01741 7.46847 7.56462 7.61125 7.83246 8.03898 8.31117 8.61750 9.23350 9.86129 10.53241 11.43304 Molecular weight = 335.20amu Principal moments of inertia in cm(-1) A = 0.009960 B = 0.003931 C = 0.003389 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2810.469839 B = 7120.414440 C = 8259.459471 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.142 4.142 2 C 0.033 3.967 3 C -0.139 4.139 4 C -0.147 4.147 5 C 0.201 3.799 6 N -0.451 5.451 7 C -0.059 4.059 8 C 0.598 3.402 9 O -0.544 6.544 10 N -0.681 5.681 11 C 0.120 3.880 12 H 0.091 0.909 13 C 0.170 3.830 14 N -0.599 5.599 15 C -0.229 4.229 16 H 0.075 0.925 17 C -0.005 4.005 18 N -0.915 5.915 19 Si 0.907 3.093 20 H -0.289 1.289 21 H -0.291 1.291 22 H -0.281 1.281 23 C 0.143 3.857 24 C -0.086 4.086 25 C -0.131 4.131 26 C -0.128 4.128 27 C 0.000 4.000 28 O -0.196 6.196 29 H 0.073 0.927 30 H 0.060 0.940 31 H 0.071 0.929 32 H 0.071 0.929 33 H 0.058 0.942 34 H 0.072 0.928 35 H 0.063 0.937 36 H 0.062 0.938 37 H 0.071 0.929 38 H 0.406 0.594 39 H 0.037 0.963 40 H 0.073 0.927 41 H 0.252 0.748 42 H 0.022 0.978 43 H 0.025 0.975 44 H 0.051 0.949 45 H 0.054 0.946 46 H 0.054 0.946 47 H 0.065 0.935 48 H 0.054 0.946 49 H 0.050 0.950 50 H 0.229 0.771 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 10.542 7.589 15.874 20.512 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.199 4.199 2 C 0.032 3.968 3 C -0.197 4.197 4 C -0.204 4.204 5 C -0.009 4.009 6 N -0.181 5.181 7 C -0.179 4.179 8 C 0.382 3.618 9 O -0.422 6.422 10 N -0.330 5.330 11 C 0.014 3.986 12 H 0.109 0.891 13 C 0.044 3.956 14 N -0.326 5.326 15 C -0.357 4.357 16 H 0.093 0.907 17 C -0.202 4.202 18 N -0.562 5.562 19 Si 0.738 3.262 20 H -0.216 1.216 21 H -0.217 1.217 22 H -0.207 1.207 23 C 0.017 3.983 24 C -0.087 4.087 25 C -0.189 4.189 26 C -0.186 4.186 27 C -0.073 4.073 28 O -0.082 6.082 29 H 0.092 0.908 30 H 0.079 0.921 31 H 0.090 0.910 32 H 0.090 0.910 33 H 0.077 0.923 34 H 0.091 0.909 35 H 0.082 0.918 36 H 0.082 0.918 37 H 0.090 0.910 38 H 0.243 0.757 39 H 0.054 0.946 40 H 0.091 0.909 41 H 0.063 0.937 42 H 0.040 0.960 43 H 0.043 0.957 44 H 0.071 0.929 45 H 0.073 0.927 46 H 0.073 0.927 47 H 0.084 0.916 48 H 0.073 0.927 49 H 0.069 0.931 50 H 0.245 0.755 Dipole moment (debyes) X Y Z Total from point charges 10.446 7.324 15.201 19.845 hybrid contribution -0.826 -0.779 0.392 1.201 sum 9.620 6.545 15.593 19.455 Atomic orbital electron populations 1.21927 0.91403 1.03083 1.03527 1.19140 0.96638 0.94349 0.86666 1.21907 1.01362 0.92968 1.03461 1.21919 1.01788 1.00810 0.95917 1.26215 0.93141 0.85981 0.95536 1.70713 1.21084 1.26566 0.99705 1.21950 1.03336 0.96666 0.95987 1.16683 0.79519 0.81918 0.83667 1.90803 1.46103 1.38523 1.66773 1.45622 1.50261 1.29439 1.07654 1.22644 1.01326 0.96140 0.78446 0.89095 1.21766 0.82938 0.92601 0.98319 1.44426 1.02403 0.99126 1.86611 1.18971 0.81984 0.93988 1.40784 0.90731 1.24796 0.97751 0.96759 1.00880 1.69942 1.33568 1.03570 1.49098 0.86181 0.84356 0.77776 0.77897 1.21639 1.21724 1.20680 1.21420 0.89760 0.89213 0.97931 1.21831 0.96824 0.94239 0.95811 1.21717 0.99906 0.98123 0.99105 1.21692 1.00329 1.01767 0.94814 1.25246 1.01548 1.01120 0.79411 1.84360 1.54589 1.39556 1.29711 0.90755 0.92084 0.90969 0.90966 0.92259 0.90920 0.91754 0.91843 0.90967 0.75747 0.94555 0.90883 0.93722 0.96002 0.95737 0.92944 0.92711 0.92748 0.91593 0.92666 0.93075 0.75451 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.30 8.45 37.16 0.31 -0.98 16 2 C 0.03 0.31 0.99 -155.66 -0.15 0.15 16 3 C -0.14 -1.11 8.46 37.16 0.31 -0.79 16 4 C -0.15 -1.06 8.01 37.16 0.30 -0.76 16 5 C 0.20 2.57 6.44 -13.08 -0.08 2.49 16 6 N -0.45 -6.95 11.05 -7.65 -0.08 -7.03 16 7 C -0.06 -0.98 6.99 -83.02 -0.58 -1.56 16 8 C 0.60 11.51 7.81 -12.52 -0.10 11.41 16 9 O -0.54 -11.72 16.53 5.26 0.09 -11.64 16 10 N -0.68 -12.90 4.54 -52.80 -0.24 -13.14 16 11 C 0.12 2.38 2.67 -65.78 -0.18 2.20 16 12 H 0.09 1.81 7.44 -51.93 -0.39 1.43 16 13 C 0.17 4.23 4.80 -2.53 -0.01 4.22 16 14 N -0.60 -15.29 3.39 -170.07 -0.58 -15.87 16 15 C -0.23 -6.45 10.24 -15.06 -0.15 -6.60 16 16 H 0.07 2.04 7.85 -52.49 -0.41 1.63 16 17 C 0.00 -0.14 5.40 -17.43 -0.09 -0.24 16 18 N -0.91 -27.58 10.68 55.49 0.59 -26.99 16 19 Si 0.91 22.57 29.56 -169.99 -5.03 17.55 16 20 H -0.29 -7.15 7.11 56.52 0.40 -6.74 16 21 H -0.29 -7.34 7.11 56.52 0.40 -6.93 16 22 H -0.28 -6.82 7.11 56.52 0.40 -6.41 16 23 C 0.14 2.94 6.41 -3.07 -0.02 2.92 16 24 C -0.09 -1.48 0.80 -152.68 -0.12 -1.60 16 25 C -0.13 -1.84 8.08 37.16 0.30 -1.54 16 26 C -0.13 -2.00 8.40 37.15 0.31 -1.69 16 27 C 0.00 0.00 11.94 29.96 0.36 0.36 16 28 O -0.20 -2.49 10.11 6.51 0.07 -2.43 16 29 H 0.07 0.80 8.14 -51.93 -0.42 0.38 16 30 H 0.06 0.59 8.14 -51.93 -0.42 0.17 16 31 H 0.07 0.48 8.14 -51.93 -0.42 0.06 16 32 H 0.07 0.42 8.14 -51.93 -0.42 0.00 16 33 H 0.06 0.46 8.14 -51.93 -0.42 0.04 16 34 H 0.07 0.67 8.14 -51.93 -0.42 0.25 16 35 H 0.06 0.49 8.14 -51.93 -0.42 0.07 16 36 H 0.06 0.45 8.14 -51.93 -0.42 0.03 16 37 H 0.07 0.38 8.14 -51.93 -0.42 -0.04 16 38 H 0.41 7.44 6.91 -40.82 -0.28 7.16 16 39 H 0.04 0.98 7.73 -51.93 -0.40 0.58 16 40 H 0.07 2.12 6.94 -51.93 -0.36 1.76 16 41 H 0.25 7.44 8.31 -40.82 -0.34 7.10 16 42 H 0.02 0.45 7.76 -51.93 -0.40 0.04 16 43 H 0.02 0.51 7.84 -51.93 -0.41 0.11 16 44 H 0.05 0.70 8.14 -51.93 -0.42 0.28 16 45 H 0.05 0.68 8.14 -51.93 -0.42 0.26 16 46 H 0.05 0.77 6.48 -51.93 -0.34 0.44 16 47 H 0.07 1.17 7.57 -51.93 -0.39 0.77 16 48 H 0.05 0.76 8.14 -51.93 -0.42 0.34 16 49 H 0.05 0.71 8.14 -51.93 -0.42 0.29 16 50 H 0.23 2.44 8.06 -52.48 -0.42 2.01 16 LS Contribution 401.84 15.07 6.06 6.06 Total: -1.00 -33.30 401.84 -7.16 -40.46 By element: Atomic # 1 Polarization: 13.47 SS G_CDS: -8.44 Total: 5.03 kcal Atomic # 6 Polarization: 7.60 SS G_CDS: 0.40 Total: 8.00 kcal Atomic # 7 Polarization: -62.72 SS G_CDS: -0.31 Total: -63.03 kcal Atomic # 8 Polarization: -14.22 SS G_CDS: 0.15 Total: -14.07 kcal Atomic # 14 Polarization: 22.57 SS G_CDS: -5.03 Total: 17.55 kcal Total LS contribution 6.06 Total: 6.06 kcal Total: -33.30 -7.16 -40.46 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000974592815.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 37.661 kcal (2) G-P(sol) polarization free energy of solvation -33.300 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 4.361 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.161 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.461 kcal (6) G-S(sol) free energy of system = (1) + (5) -2.800 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.15 seconds