Wall clock time and date at job start Tue Mar 31 2020 19:00:34 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 C 1.53006 * 109.47025 * 2 1 4 4 C 1.52997 * 109.47016 * 119.99737 * 2 1 3 5 5 C 1.50698 * 109.46856 * 240.00173 * 2 1 3 6 6 N 1.29933 * 125.38110 * 59.72114 * 5 2 1 7 7 C 1.36068 * 108.47552 * 179.83927 * 6 5 2 8 8 C 1.47425 * 126.44619 * 180.19979 * 7 6 5 9 9 O 1.21616 * 119.99813 * 180.28528 * 8 7 6 10 10 N 1.34779 * 120.00021 * 0.27600 * 8 7 6 11 11 C 1.46499 * 119.99640 * 179.97438 * 10 8 7 12 12 H 1.08997 * 110.89117 * 328.89095 * 11 10 8 13 13 C 1.54918 * 111.00204 * 92.81042 * 11 10 8 14 14 N 1.47423 * 104.83030 * 81.06157 * 13 11 10 15 15 C 1.36939 * 125.64751 * 204.08233 * 14 13 11 16 16 H 1.08000 * 120.00338 * 169.99640 * 15 14 13 17 17 C 1.38811 * 119.99743 * 349.99667 * 15 14 13 18 18 N 1.31619 * 120.00653 * 350.42302 * 17 15 14 19 19 Si 1.86801 * 119.99979 * 170.41873 * 17 15 14 20 20 H 1.48500 * 109.47367 * 94.13916 * 19 17 15 21 21 H 1.48497 * 109.47638 * 214.14168 * 19 17 15 22 22 H 1.48503 * 109.47202 * 334.14476 * 19 17 15 23 23 C 1.47023 * 108.70402 * 24.12766 * 14 13 11 24 24 C 1.54320 * 107.27058 * 358.94360 * 23 14 13 25 25 C 1.53010 * 110.71751 * 219.44361 * 24 23 14 26 26 C 1.52991 * 110.72286 * 96.16778 * 24 23 14 27 27 C 1.36089 * 107.10247 * 0.41524 * 7 6 5 28 28 O 1.34056 * 125.37437 * 240.01987 * 5 2 1 29 29 H 1.09002 * 109.47361 * 59.99944 * 1 2 3 30 30 H 1.08995 * 109.47422 * 180.02562 * 1 2 3 31 31 H 1.09001 * 109.47067 * 300.00314 * 1 2 3 32 32 H 1.08992 * 109.47184 * 59.99811 * 3 2 1 33 33 H 1.08997 * 109.47039 * 179.97438 * 3 2 1 34 34 H 1.09004 * 109.46635 * 299.99976 * 3 2 1 35 35 H 1.08999 * 109.46762 * 60.00582 * 4 2 1 36 36 H 1.09007 * 109.46951 * 180.02562 * 4 2 1 37 37 H 1.08992 * 109.47204 * 300.00195 * 4 2 1 38 38 H 0.96999 * 119.99643 * 0.02562 * 10 8 7 39 39 H 1.09002 * 110.36520 * 199.90216 * 13 11 10 40 40 H 1.08999 * 110.36273 * 322.22193 * 13 11 10 41 41 H 0.96994 * 120.00514 * 179.97438 * 18 17 15 42 42 H 1.08992 * 109.88183 * 239.51865 * 23 14 13 43 43 H 1.09007 * 109.88016 * 118.35623 * 23 14 13 44 44 H 1.08993 * 109.47213 * 173.52467 * 25 24 23 45 45 H 1.09006 * 109.46514 * 293.51853 * 25 24 23 46 46 H 1.09001 * 109.46842 * 53.51682 * 25 24 23 47 47 H 1.09000 * 109.47404 * 306.47400 * 26 24 23 48 48 H 1.09006 * 109.46854 * 66.47686 * 26 24 23 49 49 H 1.09003 * 109.47523 * 186.47120 * 26 24 23 50 50 H 1.08005 * 126.52107 * 179.78600 * 27 7 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4426 0.0000 4 6 2.0400 -0.7212 1.2493 5 6 2.0323 -0.7104 -1.2305 6 7 1.7794 -0.3617 -2.4564 7 6 2.4044 -1.2360 -3.2909 8 6 2.3846 -1.2062 -4.7648 9 8 2.9840 -2.0539 -5.3981 10 7 1.7023 -0.2396 -5.4102 11 6 1.6832 -0.2098 -6.8748 12 1 2.6109 -0.6099 -7.2838 13 6 0.4555 -0.9744 -7.4298 14 7 -0.6629 -0.0197 -7.3242 15 6 -1.9895 -0.3501 -7.2459 16 1 -2.7218 0.4077 -7.0097 17 6 -2.3931 -1.6592 -7.4702 18 7 -1.5363 -2.5408 -7.9403 19 14 -4.1524 -2.1698 -7.1048 20 1 -4.9664 -2.0622 -8.3422 21 1 -4.1702 -3.5737 -6.6212 22 1 -4.7195 -1.2793 -6.0604 23 6 -0.1182 1.3458 -7.3181 24 6 1.4183 1.2265 -7.3984 25 6 2.0897 2.2640 -6.4960 26 6 1.8979 1.3728 -8.8438 27 6 3.0470 -2.1458 -2.5091 28 8 2.8059 -1.8052 -1.2331 29 1 -0.3634 0.5138 -0.8900 30 1 -0.3634 -1.0276 0.0005 31 1 -0.3633 0.5139 0.8900 32 1 1.6767 1.9564 0.8899 33 1 3.1300 1.4426 0.0005 34 1 1.6766 1.9563 -0.8900 35 1 1.6767 -1.7488 1.2492 36 1 3.1300 -0.7208 1.2495 37 1 1.6766 -0.2074 2.1392 38 1 1.2245 0.4366 -4.9050 39 1 0.6204 -1.2521 -8.4708 40 1 0.2562 -1.8604 -6.8269 41 1 -1.8182 -3.4556 -8.0966 42 1 -0.4030 1.8544 -6.3972 43 1 -0.4926 1.8982 -8.1801 44 1 3.1652 2.0885 -6.4784 45 1 1.8909 3.2639 -6.8818 46 1 1.6909 2.1786 -5.4852 47 1 1.3650 0.6634 -9.4770 48 1 1.7024 2.3876 -9.1905 49 1 2.9681 1.1718 -8.8937 50 1 3.6388 -2.9824 -2.8503 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000974592815.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 19:00:34 Heat of formation + Delta-G solvation = -26.409045 kcal Electronic energy + Delta-G solvation = -30501.061632 eV Core-core repulsion = 26529.295810 eV Total energy + Delta-G solvation = -3971.765822 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 335.200 amu Computer time = 1.22 seconds Orbital eigenvalues (eV) -44.53401 -41.20048 -39.44496 -37.94402 -35.92175 -35.64956 -34.46527 -32.66563 -31.05519 -29.84965 -28.28667 -28.22282 -28.06486 -27.47027 -25.79730 -24.52927 -24.13396 -22.37642 -21.54068 -20.78034 -19.99016 -18.91353 -18.69264 -17.89243 -17.53035 -17.42588 -16.66694 -16.25715 -15.87367 -15.76041 -15.40387 -15.38320 -14.98085 -14.92699 -14.69632 -14.45940 -14.19453 -13.75789 -13.65420 -13.25804 -13.21195 -13.08830 -13.03246 -12.82015 -12.65150 -12.63548 -12.61689 -12.58905 -12.41382 -12.12522 -12.05994 -11.96430 -11.85154 -11.83426 -11.74930 -11.59654 -11.40595 -11.27027 -10.71359 -10.20827 -9.94354 -8.84829 -7.88855 -5.23600 0.03902 0.94112 1.41051 1.43119 1.49739 1.52322 2.03821 2.25154 2.46626 2.74101 3.30593 3.50774 3.61388 3.66896 3.67945 3.88713 3.93054 3.94604 4.04977 4.06708 4.37386 4.42082 4.45692 4.54911 4.66729 4.73165 4.75306 4.82014 4.84147 4.85506 4.89256 4.90195 4.95364 4.95956 5.00682 5.07269 5.09216 5.16248 5.25718 5.27921 5.30402 5.34257 5.39126 5.44628 5.51351 5.63119 5.65898 6.17317 6.31079 6.59462 7.04765 7.09860 7.74758 8.41351 9.22375 Molecular weight = 335.20amu Principal moments of inertia in cm(-1) A = 0.009960 B = 0.003931 C = 0.003389 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2810.469839 B = 7120.414440 C = 8259.459471 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.140 4.140 2 C 0.031 3.969 3 C -0.136 4.136 4 C -0.143 4.143 5 C 0.207 3.793 6 N -0.476 5.476 7 C -0.096 4.096 8 C 0.595 3.405 9 O -0.575 6.575 10 N -0.678 5.678 11 C 0.132 3.868 12 H 0.090 0.910 13 C 0.183 3.817 14 N -0.617 5.617 15 C -0.239 4.239 16 H 0.082 0.918 17 C -0.064 4.064 18 N -0.949 5.949 19 Si 0.973 3.027 20 H -0.283 1.283 21 H -0.298 1.298 22 H -0.267 1.267 23 C 0.138 3.862 24 C -0.072 4.072 25 C -0.122 4.122 26 C -0.125 4.125 27 C 0.022 3.978 28 O -0.189 6.189 29 H 0.051 0.949 30 H 0.050 0.950 31 H 0.102 0.898 32 H 0.100 0.900 33 H 0.060 0.940 34 H 0.055 0.945 35 H 0.058 0.942 36 H 0.065 0.935 37 H 0.098 0.902 38 H 0.410 0.590 39 H 0.004 0.996 40 H 0.023 0.977 41 H 0.245 0.755 42 H 0.032 0.968 43 H 0.027 0.973 44 H 0.065 0.935 45 H 0.080 0.920 46 H 0.051 0.949 47 H 0.035 0.965 48 H 0.081 0.919 49 H 0.071 0.929 50 H 0.255 0.745 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 11.087 9.727 18.348 23.541 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.198 4.198 2 C 0.030 3.970 3 C -0.193 4.193 4 C -0.200 4.200 5 C -0.003 4.003 6 N -0.205 5.205 7 C -0.215 4.215 8 C 0.381 3.619 9 O -0.456 6.456 10 N -0.326 5.326 11 C 0.026 3.974 12 H 0.108 0.892 13 C 0.057 3.943 14 N -0.343 5.343 15 C -0.369 4.369 16 H 0.099 0.901 17 C -0.257 4.257 18 N -0.597 5.597 19 Si 0.802 3.198 20 H -0.210 1.210 21 H -0.225 1.225 22 H -0.192 1.192 23 C 0.014 3.986 24 C -0.073 4.073 25 C -0.180 4.180 26 C -0.183 4.183 27 C -0.052 4.052 28 O -0.075 6.075 29 H 0.070 0.930 30 H 0.069 0.931 31 H 0.121 0.879 32 H 0.118 0.882 33 H 0.079 0.921 34 H 0.074 0.926 35 H 0.077 0.923 36 H 0.084 0.916 37 H 0.117 0.883 38 H 0.247 0.753 39 H 0.022 0.978 40 H 0.042 0.958 41 H 0.054 0.946 42 H 0.050 0.950 43 H 0.045 0.955 44 H 0.084 0.916 45 H 0.099 0.901 46 H 0.070 0.930 47 H 0.054 0.946 48 H 0.100 0.900 49 H 0.090 0.910 50 H 0.270 0.730 Dipole moment (debyes) X Y Z Total from point charges 10.986 9.523 17.686 22.895 hybrid contribution -1.005 -1.429 -0.330 1.778 sum 9.980 8.094 17.356 21.595 Atomic orbital electron populations 1.21937 0.91365 1.02565 1.03929 1.19469 0.96586 0.95042 0.85946 1.21908 1.01491 0.91917 1.04019 1.21927 1.01958 1.00517 0.95617 1.27113 0.91793 0.85383 0.95985 1.70666 1.22017 1.27165 1.00614 1.21686 1.06132 0.98941 0.94784 1.17079 0.78708 0.81110 0.84985 1.90770 1.47431 1.39484 1.67897 1.45552 1.50350 1.29627 1.07113 1.22358 0.98523 0.97389 0.79135 0.89173 1.21393 0.85338 0.91774 0.95821 1.44657 1.01908 1.01345 1.86375 1.19390 0.83478 0.94281 1.39703 0.90066 1.25638 1.01772 0.96922 1.01409 1.70174 1.35453 1.03399 1.50684 0.85142 0.79776 0.76893 0.78015 1.21018 1.22499 1.19177 1.21637 0.92085 0.86668 0.98234 1.21826 0.94655 0.93222 0.97633 1.21664 1.00212 0.98034 0.98067 1.21689 1.01181 1.02491 0.92931 1.25709 0.99817 1.00405 0.79273 1.84410 1.54459 1.39546 1.29053 0.92967 0.93067 0.87928 0.88157 0.92054 0.92606 0.92327 0.91572 0.88342 0.75323 0.97836 0.95833 0.94578 0.95049 0.95457 0.91622 0.90139 0.93015 0.94583 0.90047 0.90991 0.72952 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.34 8.45 71.98 0.61 -1.73 16 2 C 0.03 0.51 0.99 -52.93 -0.05 0.45 16 3 C -0.14 -1.83 8.46 71.98 0.61 -1.22 16 4 C -0.14 -1.63 8.01 71.98 0.58 -1.05 16 5 C 0.21 5.10 6.44 88.39 0.57 5.67 16 6 N -0.48 -14.60 11.05 -293.03 -3.24 -17.84 16 7 C -0.10 -3.21 6.99 40.41 0.28 -2.93 16 8 C 0.59 23.57 7.81 86.66 0.68 24.25 16 9 O -0.58 -25.70 16.53 -4.08 -0.07 -25.76 16 10 N -0.68 -26.27 4.54 -439.20 -2.00 -28.27 16 11 C 0.13 5.37 2.67 46.39 0.12 5.49 16 12 H 0.09 3.70 7.44 -2.39 -0.02 3.68 16 13 C 0.18 9.67 4.80 86.86 0.42 10.09 16 14 N -0.62 -32.44 3.39 -691.98 -2.35 -34.79 16 15 C -0.24 -13.81 10.24 84.03 0.86 -12.95 16 16 H 0.08 4.46 7.85 -2.91 -0.02 4.44 16 17 C -0.06 -3.80 5.40 84.86 0.46 -3.34 16 18 N -0.95 -60.11 10.68 21.65 0.23 -59.87 16 19 Si 0.97 47.54 29.56 68.60 2.03 49.56 16 20 H -0.28 -13.48 7.11 99.48 0.71 -12.77 16 21 H -0.30 -14.79 7.11 99.48 0.71 -14.09 16 22 H -0.27 -12.29 7.11 99.48 0.71 -11.58 16 23 C 0.14 5.66 6.41 86.73 0.56 6.22 16 24 C -0.07 -2.41 0.80 -50.99 -0.04 -2.46 16 25 C -0.12 -3.11 8.08 71.99 0.58 -2.53 16 26 C -0.13 -3.74 8.40 71.98 0.60 -3.13 16 27 C 0.02 0.59 11.94 67.32 0.80 1.39 16 28 O -0.19 -4.54 10.11 0.36 0.00 -4.53 16 29 H 0.05 1.10 8.14 -2.39 -0.02 1.08 16 30 H 0.05 0.94 8.14 -2.39 -0.02 0.92 16 31 H 0.10 1.06 8.14 -2.39 -0.02 1.04 16 32 H 0.10 0.79 8.14 -2.39 -0.02 0.77 16 33 H 0.06 0.80 8.14 -2.39 -0.02 0.79 16 34 H 0.05 0.95 8.14 -2.38 -0.02 0.93 16 35 H 0.06 0.75 8.14 -2.39 -0.02 0.73 16 36 H 0.07 0.74 8.14 -2.38 -0.02 0.72 16 37 H 0.10 0.63 8.14 -2.39 -0.02 0.61 16 38 H 0.41 15.19 6.91 -92.71 -0.64 14.55 16 39 H 0.00 0.22 7.73 -2.39 -0.02 0.20 16 40 H 0.02 1.45 6.94 -2.39 -0.02 1.43 16 41 H 0.25 15.20 8.31 -92.71 -0.77 14.42 16 42 H 0.03 1.24 7.76 -2.39 -0.02 1.22 16 43 H 0.03 1.12 7.84 -2.38 -0.02 1.10 16 44 H 0.06 1.54 8.14 -2.39 -0.02 1.52 16 45 H 0.08 1.69 8.14 -2.38 -0.02 1.67 16 46 H 0.05 1.36 6.48 -2.39 -0.02 1.34 16 47 H 0.03 1.28 7.57 -2.39 -0.02 1.26 16 48 H 0.08 2.01 8.14 -2.38 -0.02 1.99 16 49 H 0.07 1.85 8.14 -2.39 -0.02 1.83 16 50 H 0.25 5.11 8.06 -2.91 -0.02 5.08 16 Total: -1.00 -76.90 401.84 2.53 -74.37 By element: Atomic # 1 Polarization: 24.61 SS G_CDS: 0.29 Total: 24.90 kcal Atomic # 6 Polarization: 14.60 SS G_CDS: 7.63 Total: 22.23 kcal Atomic # 7 Polarization: -133.41 SS G_CDS: -7.35 Total: -140.77 kcal Atomic # 8 Polarization: -30.23 SS G_CDS: -0.06 Total: -30.30 kcal Atomic # 14 Polarization: 47.54 SS G_CDS: 2.03 Total: 49.56 kcal Total: -76.90 2.53 -74.37 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000974592815.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 47.959 kcal (2) G-P(sol) polarization free energy of solvation -76.902 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -28.943 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.534 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -74.368 kcal (6) G-S(sol) free energy of system = (1) + (5) -26.409 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.23 seconds