Wall clock time and date at job start Tue Mar 31 2020 19:00:26 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 C 1.53003 * 109.46835 * 2 1 4 4 C 1.52996 * 109.47142 * 240.00444 * 2 1 3 5 5 C 1.50693 * 109.47263 * 120.00047 * 2 1 3 6 6 C 1.35314 * 126.66589 * 60.28895 * 5 2 1 7 7 C 1.42283 * 103.92193 * 180.15089 * 6 5 2 8 8 C 1.48330 * 126.93629 * 179.88807 * 7 6 5 9 9 O 1.21491 * 120.00371 * 359.70768 * 8 7 6 10 10 N 1.34776 * 119.99807 * 179.70857 * 8 7 6 11 11 C 1.46499 * 120.00077 * 179.97438 * 10 8 7 12 12 H 1.08994 * 110.88689 * 322.57390 * 11 10 8 13 13 C 1.54907 * 111.00010 * 86.45742 * 11 10 8 14 14 N 1.47420 * 104.83524 * 81.06591 * 13 11 10 15 15 C 1.36932 * 125.65088 * 204.09015 * 14 13 11 16 16 H 1.08001 * 120.00072 * 180.02562 * 15 14 13 17 17 C 1.38815 * 120.00288 * 0.04266 * 15 14 13 18 18 N 1.31619 * 119.99512 * 0.02562 * 17 15 14 19 19 Si 1.86795 * 120.00603 * 179.97438 * 17 15 14 20 20 H 1.48496 * 109.46911 * 89.99498 * 19 17 15 21 21 H 1.48497 * 109.47297 * 210.00245 * 19 17 15 22 22 H 1.48507 * 109.46877 * 330.00101 * 19 17 15 23 23 C 1.47026 * 108.70428 * 24.12518 * 14 13 11 24 24 C 1.54330 * 107.26840 * 358.94103 * 23 14 13 25 25 C 1.53005 * 110.71673 * 96.16971 * 24 23 14 26 26 C 1.52994 * 110.71826 * 219.44364 * 24 23 14 27 27 N 1.30987 * 106.11967 * 359.62695 * 7 6 5 28 28 O 1.20906 * 111.44219 * 0.23879 * 27 7 6 29 29 H 1.08994 * 109.47363 * 299.99406 * 1 2 3 30 30 H 1.09001 * 109.47374 * 60.00074 * 1 2 3 31 31 H 1.09004 * 109.46704 * 180.02562 * 1 2 3 32 32 H 1.08995 * 109.47076 * 180.02562 * 3 2 1 33 33 H 1.08998 * 109.47357 * 300.00542 * 3 2 1 34 34 H 1.09003 * 109.47120 * 59.99856 * 3 2 1 35 35 H 1.08996 * 109.47114 * 299.99722 * 4 2 1 36 36 H 1.09001 * 109.47410 * 59.99503 * 4 2 1 37 37 H 1.09005 * 109.47009 * 179.97438 * 4 2 1 38 38 H 1.07998 * 128.04194 * 0.02562 * 6 5 2 39 39 H 0.97002 * 119.99742 * 0.02562 * 10 8 7 40 40 H 1.08997 * 110.36783 * 322.22310 * 13 11 10 41 41 H 1.08997 * 110.45914 * 199.94961 * 13 11 10 42 42 H 0.97003 * 120.00403 * 180.02562 * 18 17 15 43 43 H 1.08998 * 109.88351 * 118.35702 * 23 14 13 44 44 H 1.08998 * 109.88379 * 239.52492 * 23 14 13 45 45 H 1.08998 * 109.47047 * 61.45324 * 25 24 23 46 46 H 1.09000 * 109.46907 * 181.45365 * 25 24 23 47 47 H 1.09001 * 109.47302 * 301.45440 * 25 24 23 48 48 H 1.08994 * 109.47458 * 58.54762 * 26 24 23 49 49 H 1.09010 * 109.46817 * 178.55144 * 26 24 23 50 50 H 1.09000 * 109.47214 * 298.54123 * 26 24 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4426 0.0000 4 6 2.0400 -0.7211 -1.2493 5 6 2.0324 -0.7104 1.2304 6 6 1.7945 -1.9974 1.5741 7 6 2.4860 -2.1557 2.8074 8 6 2.5598 -3.3833 3.6367 9 8 1.9853 -4.3927 3.2803 10 7 3.2642 -3.3789 4.7858 11 6 3.3367 -4.5912 5.6052 12 1 2.3855 -5.1233 5.5967 13 6 4.4916 -5.5105 5.1354 14 7 5.7035 -4.9374 5.7486 15 6 6.9824 -5.0926 5.2847 16 1 7.8065 -4.6306 5.8080 17 6 7.2198 -5.8433 4.1414 18 7 6.2154 -6.4056 3.5032 19 14 8.9644 -6.0544 3.5080 20 1 9.5727 -7.2601 4.1256 21 1 8.9392 -6.2135 2.0318 22 1 9.7682 -4.8573 3.8632 23 6 5.3117 -4.1723 6.9414 24 6 3.7749 -4.2567 7.0555 25 6 3.3641 -5.3742 8.0164 26 6 3.1908 -2.9149 7.5017 27 7 3.0489 -1.0002 3.0597 28 8 2.8055 -0.1916 2.1944 29 1 -0.3634 0.5137 0.8900 30 1 -0.3634 0.5138 -0.8900 31 1 -0.3633 -1.0277 0.0005 32 1 3.1299 1.4426 -0.0005 33 1 1.6765 1.9564 -0.8899 34 1 1.6766 1.9564 0.8900 35 1 1.6767 -1.7488 -1.2493 36 1 1.6766 -0.2073 -2.1392 37 1 3.1300 -0.7207 -1.2495 38 1 1.2131 -2.7328 1.0380 39 1 3.7226 -2.5729 5.0705 40 1 4.5719 -5.4935 4.0486 41 1 4.3342 -6.5300 5.4875 42 1 6.3812 -6.9306 2.7045 43 1 5.7736 -4.6060 7.8283 44 1 5.6187 -3.1322 6.8320 45 1 3.7584 -5.1621 9.0102 46 1 2.2766 -5.4327 8.0618 47 1 3.7645 -6.3239 7.6618 48 1 3.4698 -2.1413 6.7864 49 1 2.1044 -2.9899 7.5506 50 1 3.5818 -2.6578 8.4861 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000974824013.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 19:00:26 Heat of formation + Delta-G solvation = 20.335064 kcal Electronic energy + Delta-G solvation = -30308.975820 eV Core-core repulsion = 26339.236975 eV Total energy + Delta-G solvation = -3969.738845 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 335.200 amu Computer time = 1.10 seconds Orbital eigenvalues (eV) -46.22777 -41.30606 -39.51297 -38.28824 -35.77554 -35.16546 -34.50692 -32.65849 -31.97286 -30.00429 -28.37458 -28.16408 -28.08633 -27.49218 -26.11701 -24.69161 -24.24547 -22.69186 -21.88162 -20.91861 -19.92300 -18.91477 -18.76536 -18.32515 -17.92296 -17.44824 -16.69316 -16.02831 -15.94512 -15.63254 -15.47621 -15.21814 -14.99115 -14.96603 -14.71977 -14.62601 -14.20936 -13.79886 -13.72280 -13.24946 -13.20435 -13.13322 -13.06270 -12.91990 -12.71419 -12.67259 -12.63358 -12.56086 -12.26617 -12.15409 -12.01718 -11.87011 -11.83307 -11.78833 -11.58059 -11.54826 -11.44883 -11.36086 -10.80936 -10.48779 -10.13436 -8.89791 -7.79572 -5.24869 0.01131 0.61832 1.40679 1.43112 1.51607 1.76681 1.93701 2.09548 2.45264 2.84358 3.29519 3.34683 3.48337 3.62943 3.80648 3.90117 3.93446 3.96209 3.99133 4.01666 4.22917 4.33717 4.39647 4.44184 4.64597 4.76682 4.78481 4.79904 4.81255 4.82590 4.86401 4.89690 4.96332 5.01268 5.01594 5.04244 5.10924 5.14408 5.20076 5.27120 5.29300 5.39763 5.42310 5.43727 5.47278 5.57127 5.76748 6.26438 6.30607 6.90274 7.02498 7.05282 7.74594 8.38294 9.21150 Molecular weight = 335.20amu Principal moments of inertia in cm(-1) A = 0.010998 B = 0.003618 C = 0.003024 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2545.221283 B = 7736.884631 C = 9256.947817 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.140 4.140 2 C 0.018 3.982 3 C -0.148 4.148 4 C -0.144 4.144 5 C -0.007 4.007 6 C -0.189 4.189 7 C -0.043 4.043 8 C 0.591 3.409 9 O -0.559 6.559 10 N -0.680 5.680 11 C 0.133 3.867 12 H 0.089 0.911 13 C 0.154 3.846 14 N -0.618 5.618 15 C -0.236 4.236 16 H 0.083 0.917 17 C -0.068 4.068 18 N -0.948 5.948 19 Si 0.978 3.022 20 H -0.284 1.284 21 H -0.297 1.297 22 H -0.268 1.268 23 C 0.137 3.863 24 C -0.072 4.072 25 C -0.125 4.125 26 C -0.126 4.126 27 N -0.347 5.347 28 O 0.133 5.867 29 H 0.060 0.940 30 H 0.096 0.904 31 H 0.060 0.940 32 H 0.056 0.944 33 H 0.092 0.908 34 H 0.064 0.936 35 H 0.059 0.941 36 H 0.098 0.902 37 H 0.051 0.949 38 H 0.187 0.813 39 H 0.407 0.593 40 H 0.068 0.932 41 H -0.006 1.006 42 H 0.243 0.757 43 H 0.031 0.969 44 H 0.028 0.972 45 H 0.080 0.920 46 H 0.074 0.926 47 H 0.037 0.963 48 H 0.047 0.953 49 H 0.070 0.930 50 H 0.081 0.919 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -13.782 17.016 -3.719 22.211 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.197 4.197 2 C 0.017 3.983 3 C -0.205 4.205 4 C -0.202 4.202 5 C -0.071 4.071 6 C -0.212 4.212 7 C -0.200 4.200 8 C 0.376 3.624 9 O -0.437 6.437 10 N -0.330 5.330 11 C 0.027 3.973 12 H 0.107 0.893 13 C 0.028 3.972 14 N -0.344 5.344 15 C -0.365 4.365 16 H 0.101 0.899 17 C -0.261 4.261 18 N -0.598 5.598 19 Si 0.806 3.194 20 H -0.211 1.211 21 H -0.224 1.224 22 H -0.192 1.192 23 C 0.012 3.988 24 C -0.073 4.073 25 C -0.182 4.182 26 C -0.183 4.183 27 N -0.047 5.047 28 O 0.056 5.944 29 H 0.079 0.921 30 H 0.115 0.885 31 H 0.079 0.921 32 H 0.075 0.925 33 H 0.111 0.889 34 H 0.083 0.917 35 H 0.078 0.922 36 H 0.117 0.883 37 H 0.070 0.930 38 H 0.204 0.796 39 H 0.244 0.756 40 H 0.086 0.914 41 H 0.012 0.988 42 H 0.053 0.947 43 H 0.049 0.951 44 H 0.046 0.954 45 H 0.099 0.901 46 H 0.093 0.907 47 H 0.056 0.944 48 H 0.066 0.934 49 H 0.089 0.911 50 H 0.100 0.900 Dipole moment (debyes) X Y Z Total from point charges -13.271 16.585 -3.024 21.455 hybrid contribution 1.080 -1.102 -0.730 1.707 sum -12.191 15.483 -3.754 20.061 Atomic orbital electron populations 1.21972 0.90499 1.03223 1.04009 1.19456 0.97128 0.95705 0.86041 1.21943 1.01585 0.92830 1.04109 1.22005 1.01321 1.00795 0.96033 1.25126 0.94755 0.93075 0.94103 1.22509 1.05235 0.97881 0.95590 1.23460 1.03305 0.94029 0.99244 1.17183 0.79116 0.85478 0.80645 1.90743 1.48023 1.33537 1.71378 1.45659 1.50167 1.15381 1.21758 1.22359 0.98785 0.85527 0.90603 0.89298 1.21950 0.84032 0.91629 0.99586 1.44678 1.02756 1.59059 1.27952 1.19446 0.84233 1.26116 1.06708 0.89904 1.25645 1.01366 1.00367 0.98674 1.70109 1.30220 1.38917 1.20562 0.85077 0.79408 0.78164 0.76709 1.21136 1.22408 1.19238 1.21657 0.93286 0.94536 0.89320 1.21836 0.94339 0.98469 0.92671 1.21688 1.01897 0.96204 0.98437 1.21703 1.01245 0.93554 1.01829 1.74154 1.18461 1.00588 1.11461 1.84731 1.50715 1.34726 1.24274 0.92072 0.88521 0.92109 0.92489 0.88873 0.91724 0.92233 0.88339 0.92970 0.79567 0.75582 0.91380 0.98787 0.94686 0.95069 0.95428 0.90117 0.90719 0.94419 0.93358 0.91106 0.90016 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.47 8.36 71.98 0.60 -0.87 16 2 C 0.02 0.25 0.94 -52.93 -0.05 0.20 16 3 C -0.15 -1.65 8.07 71.98 0.58 -1.07 16 4 C -0.14 -1.88 8.36 71.98 0.60 -1.28 16 5 C -0.01 -0.16 5.76 25.01 0.14 -0.02 16 6 C -0.19 -5.37 10.40 22.60 0.24 -5.14 16 7 C -0.04 -1.52 7.19 42.96 0.31 -1.21 16 8 C 0.59 24.68 7.85 86.93 0.68 25.36 16 9 O -0.56 -26.51 16.70 -3.69 -0.06 -26.57 16 10 N -0.68 -27.02 4.67 -438.38 -2.05 -29.07 16 11 C 0.13 5.45 2.56 46.38 0.12 5.57 16 12 H 0.09 3.64 7.63 -2.39 -0.02 3.62 16 13 C 0.15 8.18 5.26 86.86 0.46 8.64 16 14 N -0.62 -32.64 3.39 -692.00 -2.35 -34.99 16 15 C -0.24 -13.63 10.27 84.03 0.86 -12.77 16 16 H 0.08 4.55 7.83 -2.91 -0.02 4.53 16 17 C -0.07 -4.03 5.49 84.86 0.47 -3.56 16 18 N -0.95 -60.03 10.09 21.65 0.22 -59.81 16 19 Si 0.98 47.64 29.55 68.60 2.03 49.66 16 20 H -0.28 -13.55 7.11 99.48 0.71 -12.84 16 21 H -0.30 -14.67 7.11 99.48 0.71 -13.96 16 22 H -0.27 -12.27 7.11 99.48 0.71 -11.57 16 23 C 0.14 5.61 6.41 86.73 0.56 6.17 16 24 C -0.07 -2.40 0.81 -50.99 -0.04 -2.44 16 25 C -0.12 -3.62 8.44 71.98 0.61 -3.02 16 26 C -0.13 -3.20 8.16 71.98 0.59 -2.61 16 27 N -0.35 -11.44 11.84 -49.50 -0.59 -12.03 16 28 O 0.13 3.61 10.65 71.83 0.77 4.37 16 29 H 0.06 0.68 8.14 -2.39 -0.02 0.66 16 30 H 0.10 0.56 8.14 -2.39 -0.02 0.54 16 31 H 0.06 0.71 8.03 -2.39 -0.02 0.69 16 32 H 0.06 0.75 8.14 -2.39 -0.02 0.73 16 33 H 0.09 0.60 8.14 -2.39 -0.02 0.58 16 34 H 0.06 0.73 8.14 -2.39 -0.02 0.71 16 35 H 0.06 0.85 8.02 -2.39 -0.02 0.83 16 36 H 0.10 0.76 8.14 -2.39 -0.02 0.74 16 37 H 0.05 0.81 8.14 -2.38 -0.02 0.79 16 38 H 0.19 4.78 8.06 -2.91 -0.02 4.75 16 39 H 0.41 15.21 6.58 -92.71 -0.61 14.60 16 40 H 0.07 4.27 5.87 -2.39 -0.01 4.25 16 41 H -0.01 -0.32 7.72 -2.39 -0.02 -0.34 16 42 H 0.24 15.12 8.31 -92.71 -0.77 14.35 16 43 H 0.03 1.25 7.84 -2.39 -0.02 1.24 16 44 H 0.03 1.11 7.82 -2.39 -0.02 1.09 16 45 H 0.08 1.96 8.14 -2.39 -0.02 1.94 16 46 H 0.07 1.83 8.14 -2.39 -0.02 1.81 16 47 H 0.04 1.29 7.45 -2.39 -0.02 1.28 16 48 H 0.05 1.28 6.21 -2.39 -0.01 1.27 16 49 H 0.07 1.61 8.14 -2.38 -0.02 1.59 16 50 H 0.08 1.72 8.14 -2.39 -0.02 1.70 16 Total: -1.00 -75.90 399.48 5.01 -70.89 By element: Atomic # 1 Polarization: 25.26 SS G_CDS: 0.32 Total: 25.58 kcal Atomic # 6 Polarization: 5.23 SS G_CDS: 6.72 Total: 11.95 kcal Atomic # 7 Polarization: -131.12 SS G_CDS: -4.77 Total: -135.89 kcal Atomic # 8 Polarization: -22.90 SS G_CDS: 0.70 Total: -22.20 kcal Atomic # 14 Polarization: 47.64 SS G_CDS: 2.03 Total: 49.66 kcal Total: -75.90 5.01 -70.89 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000974824013.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 91.225 kcal (2) G-P(sol) polarization free energy of solvation -75.897 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 15.328 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.007 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -70.890 kcal (6) G-S(sol) free energy of system = (1) + (5) 20.335 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.10 seconds