Wall clock time and date at job start Tue Mar 31 2020 19:00:43
AMSOL-version 7.1
by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers,
I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget,
B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar
Copyright 2004 by Regents of the University of Minnesota.
All rights reserved.
Notice: recipients of this code are asked to comply
with the user agreement in Section 1 of the documentation file.
*******************************************************************************
* 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION
* - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT)
* GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK
* TLIMIT= - A TIME OF 15. SECONDS REQUESTED
* CHARGE - CHARGE ON SYSTEM= -1
* AM1 - THE AM1 HAMILTONIAN TO BE USED
* DEV - DEVELOPER OPTIONS ARE ALLOWED
* SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED
* - CHARGE MODEL 2 WILL BE USED (CM2A)
* - THE SOLVENT IS USER-SPECIFIED
* DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06
* IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345
* ALPHA - THE SOLVENT ALPHA IS 0.00
* BETA - THE SOLVENT BETA IS 0.00
* GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS
* 38.93 CAL MOL^-1 ANGSTROM^-2
* FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00
* FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00
*******************************************************************************
Atom NO. Chemical Bond length Bond angle Dihedral angle
number (k) symbol (angstroms) (degrees) (degrees)
(I) NA:I NB:NA:I NC:NB:NA:I NA NB NC
1 1 C
2 2 C 1.53000 * 1
3 3 C 1.53001 * 109.46893 * 2 1
4 4 C 1.53000 * 109.47129 * 240.00416 * 2 1 3
5 5 C 1.50696 * 109.47470 * 119.99865 * 2 1 3
6 6 O 1.34258 * 126.52887 * 241.25300 * 5 2 1
7 7 C 1.34050 * 108.22707 * 179.97438 * 6 5 2
8 8 N 1.29942 * 109.24296 * 359.76490 * 7 6 5
9 9 C 1.36059 * 108.47732 * 0.38012 * 8 7 6
10 10 C 1.47418 * 126.44838 * 179.88495 * 9 8 7
11 11 O 1.21613 * 120.00134 * 175.75132 * 10 9 8
12 12 N 1.34773 * 120.00059 * 355.47395 * 10 9 8
13 13 C 1.46501 * 120.00020 * 180.27385 * 12 10 9
14 14 H 1.08994 * 110.88515 * 325.70274 * 13 12 10
15 15 C 1.54909 * 111.00211 * 89.58838 * 13 12 10
16 16 N 1.47527 * 104.78570 * 81.08672 * 15 13 12
17 17 C 1.36934 * 125.63554 * 204.08671 * 16 15 13
18 18 H 1.08001 * 119.99955 * 180.02562 * 17 16 15
19 19 C 1.38811 * 120.00300 * 0.03542 * 17 16 15
20 20 N 1.31624 * 119.99678 * 0.02562 * 19 17 16
21 21 Si 1.86801 * 120.00253 * 180.02562 * 19 17 16
22 22 H 1.48497 * 109.46938 * 60.00360 * 21 19 17
23 23 H 1.48507 * 109.46919 * 180.02562 * 21 19 17
24 24 H 1.48498 * 109.46838 * 300.00069 * 21 19 17
25 25 C 1.47019 * 108.71402 * 24.11656 * 16 15 13
26 26 C 1.54322 * 107.27512 * 358.94600 * 25 16 15
27 27 C 1.52997 * 110.72060 * 219.44294 * 26 25 16
28 28 C 1.52999 * 110.72169 * 96.16435 * 26 25 16
29 29 H 1.08995 * 109.46908 * 308.84119 * 1 2 3
30 30 H 1.08998 * 109.47190 * 68.84997 * 1 2 3
31 31 H 1.09005 * 109.46484 * 188.84379 * 1 2 3
32 32 H 1.09005 * 109.47071 * 180.02562 * 3 2 1
33 33 H 1.08997 * 109.47314 * 300.00423 * 3 2 1
34 34 H 1.09005 * 109.47163 * 60.00431 * 3 2 1
35 35 H 1.09000 * 109.47348 * 291.59986 * 4 2 1
36 36 H 1.08995 * 109.47122 * 51.60250 * 4 2 1
37 37 H 1.09001 * 109.47312 * 171.60399 * 4 2 1
38 38 H 1.08004 * 125.37482 * 180.02562 * 7 6 5
39 39 H 0.97004 * 119.99859 * 0.27917 * 12 10 9
40 40 H 1.09005 * 110.36210 * 199.90189 * 15 13 12
41 41 H 1.08998 * 110.36511 * 322.22175 * 15 13 12
42 42 H 0.97004 * 120.00040 * 179.97438 * 20 19 17
43 43 H 1.08997 * 109.88557 * 239.52658 * 25 16 15
44 44 H 1.09002 * 110.00891 * 118.42871 * 25 16 15
45 45 H 1.09009 * 109.46903 * 173.51802 * 27 26 25
46 46 H 1.09000 * 109.46973 * 293.51523 * 27 26 25
47 47 H 1.08998 * 109.47554 * 53.52133 * 27 26 25
48 48 H 1.08996 * 109.47297 * 306.48128 * 28 26 25
49 49 H 1.09001 * 109.47029 * 66.48057 * 28 26 25
50 50 H 1.09004 * 109.47278 * 186.47820 * 28 26 25
Note: An asterisk (*) indicates this parameter was or will be optimized.
Cartesian coordinates (angstroms)
NO. Atom X Y Z
1 6 0.0000 0.0000 0.0000
2 6 1.5300 0.0000 0.0000
3 6 2.0399 1.4425 0.0000
4 6 2.0400 -0.7212 -1.2493
5 6 2.0324 -0.7103 1.2304
6 8 2.7880 -0.1814 2.2060
7 6 3.0210 -1.1345 3.1194
8 7 2.4345 -2.2338 2.7503
9 6 1.8061 -2.0102 1.5644
10 6 1.0224 -2.9897 0.7902
11 8 0.4439 -2.6423 -0.2215
12 7 0.9514 -4.2715 1.2006
13 6 0.1775 -5.2462 0.4279
14 1 -0.6999 -4.7791 -0.0193
15 6 1.0575 -5.9232 -0.6523
16 7 1.7971 -6.9757 0.0699
17 6 2.9939 -7.5179 -0.3160
18 1 3.4566 -8.2875 0.2840
19 6 3.6125 -7.0782 -1.4783
20 7 3.0489 -6.1397 -2.2091
21 14 5.2447 -7.8183 -2.0052
22 1 5.0805 -9.2790 -2.2168
23 1 5.6916 -7.1816 -3.2702
24 1 6.2596 -7.5823 -0.9472
25 6 1.0364 -7.3465 1.2721
26 6 -0.2257 -6.4592 1.3076
27 6 -0.5331 -6.0121 2.7381
28 6 -1.4218 -7.1947 0.6998
29 1 -0.3633 0.6445 0.8004
30 1 -0.3633 0.3708 -0.9584
31 1 -0.3632 -1.0155 0.1580
32 1 3.1300 1.4426 -0.0005
33 1 1.6766 1.9564 -0.8899
34 1 1.6766 1.9564 0.8901
35 1 1.8045 -1.7830 -1.1775
36 1 1.5593 -0.3013 -2.1328
37 1 3.1196 -0.5931 -1.3275
38 1 3.6007 -1.0075 4.0217
39 1 1.4128 -4.5486 2.0076
40 1 0.4327 -6.3636 -1.4293
41 1 1.7497 -5.2009 -1.0850
42 1 3.4813 -5.8321 -3.0211
43 1 1.6397 -7.1685 2.1622
44 1 0.7496 -8.3970 1.2227
45 1 -1.3556 -5.2967 2.7264
46 1 -0.8136 -6.8784 3.3372
47 1 0.3507 -5.5424 3.1698
48 1 -1.1603 -7.5532 -0.2957
49 1 -1.6875 -8.0414 1.3328
50 1 -2.2698 -6.5134 0.6295
RHF calculation, no. of doubly occupied orbitals= 64
REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN:
H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987).
REFERENCE FOR CHARGE MODEL 2:
J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885.
REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL:
J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and
D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63
P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted.
CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R
& SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93
& DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV
ZINC000977468637.mol2 50
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
SCF FIELD WAS ACHIEVED
Wall clock time and date at job start Tue Mar 31 2020 19:00:43
Heat of formation + Delta-G solvation = 12.797491 kcal
Electronic energy + Delta-G solvation = -31391.078873 eV
Core-core repulsion = 27421.013175 eV
Total energy + Delta-G solvation = -3970.065699 eV
No. of doubly occupied orbitals = 64
Molecular weight
(most abundant/longest-lived isotopes) = 335.200 amu
Computer time = 1.13 seconds
Orbital eigenvalues (eV)
-43.40488 -39.65134 -38.07570 -36.64324 -34.69977 -33.75983 -32.90265 -30.65901
-29.72919 -28.09773 -27.27355 -27.07188 -26.80998 -25.57444 -24.30167 -22.90408
-22.82985 -20.80383 -19.90069 -19.39361 -18.72214 -17.76711 -16.71260 -16.67560
-15.98563 -15.80510 -15.13768 -14.81703 -14.48336 -14.38634 -13.95994 -13.84288
-13.69461 -13.63602 -13.25008 -13.14905 -12.66966 -12.29977 -12.23622 -11.96843
-11.88363 -11.74998 -11.56131 -11.51734 -11.30046 -11.14841 -11.08544 -10.96623
-10.91995 -10.84697 -10.74045 -10.51652 -10.29475 -10.18480 -9.89649 -9.76383
-9.64137 -9.40557 -8.82522 -8.64011 -8.24160 -6.76920 -5.59471 -3.01723
1.26241 2.19981 2.59217 3.42520 3.46740 3.48188 3.53530 3.72408
4.14530 4.52055 4.52518 4.82825 4.96313 5.02118 5.10130 5.19452
5.29421 5.35119 5.54438 5.56417 5.63047 5.66579 5.69670 5.71591
5.84365 5.89493 5.93272 5.96608 6.06321 6.07090 6.11147 6.12672
6.18286 6.22047 6.24816 6.33257 6.43423 6.52998 6.54331 6.64756
6.69930 6.74929 6.88555 7.07265 7.46452 7.57129 7.65747 7.91101
8.09949 8.42326 8.69666 9.25900 9.87516 10.51791 11.43300
Molecular weight = 335.20amu
Principal moments of inertia in cm(-1)
A = 0.010416 B = 0.004532 C = 0.003820
Principal moments of inertia in units of 10**(-40)*gram-cm**2
A = 2687.534262 B = 6177.213251 C = 7327.780333
Net atomic charges, atomic populations, and dipole contributions
calculated with CM2
Atom NO. Type Charge No. of electrons
1 C -0.152 4.152
2 C 0.025 3.975
3 C -0.145 4.145
4 C -0.154 4.154
5 C 0.051 3.949
6 O -0.200 6.200
7 C 0.162 3.838
8 N -0.459 5.459
9 C -0.066 4.066
10 C 0.596 3.404
11 O -0.526 6.526
12 N -0.680 5.680
13 C 0.122 3.878
14 H 0.089 0.911
15 C 0.148 3.852
16 N -0.600 5.600
17 C -0.223 4.223
18 H 0.075 0.925
19 C -0.009 4.009
20 N -0.918 5.918
21 Si 0.911 3.089
22 H -0.286 1.286
23 H -0.290 1.290
24 H -0.286 1.286
25 C 0.143 3.857
26 C -0.087 4.087
27 C -0.131 4.131
28 C -0.127 4.127
29 H 0.044 0.956
30 H 0.066 0.934
31 H 0.098 0.902
32 H 0.058 0.942
33 H 0.066 0.934
34 H 0.056 0.944
35 H 0.101 0.899
36 H 0.066 0.934
37 H 0.047 0.953
38 H 0.251 0.749
39 H 0.405 0.595
40 H 0.021 0.979
41 H 0.113 0.887
42 H 0.252 0.748
43 H 0.022 0.978
44 H 0.023 0.977
45 H 0.052 0.948
46 H 0.053 0.947
47 H 0.054 0.946
48 H 0.064 0.936
49 H 0.054 0.946
50 H 0.050 0.950
For the charges calculated by CM2:
Dipole moment (debyes) X Y Z Total
from point charges -5.695 12.311 9.544 16.585
Note: The Mulliken population analysis charges presented below were not
used in the solvation calculation but are provided for completeness.
The chosen solvation model uses CM2 partial charges for calculating
solvation energies.
Net atomic charges, atomic populations, and dipole contributions
using Mulliken population analysis
Atom NO. Type Charge No. of electrons
1 C -0.209 4.209
2 C 0.025 3.975
3 C -0.202 4.202
4 C -0.211 4.211
5 C -0.006 4.006
6 O -0.086 6.086
7 C -0.066 4.066
8 N -0.188 5.188
9 C -0.186 4.186
10 C 0.382 3.618
11 O -0.405 6.405
12 N -0.328 5.328
13 C 0.017 3.983
14 H 0.107 0.893
15 C 0.022 3.978
16 N -0.326 5.326
17 C -0.351 4.351
18 H 0.093 0.907
19 C -0.204 4.204
20 N -0.566 5.566
21 Si 0.742 3.258
22 H -0.213 1.213
23 H -0.216 1.216
24 H -0.213 1.213
25 C 0.017 3.983
26 C -0.088 4.088
27 C -0.189 4.189
28 C -0.185 4.185
29 H 0.063 0.937
30 H 0.085 0.915
31 H 0.117 0.883
32 H 0.077 0.923
33 H 0.085 0.915
34 H 0.075 0.925
35 H 0.119 0.881
36 H 0.085 0.915
37 H 0.067 0.933
38 H 0.267 0.733
39 H 0.241 0.759
40 H 0.039 0.961
41 H 0.131 0.869
42 H 0.063 0.937
43 H 0.039 0.961
44 H 0.041 0.959
45 H 0.071 0.929
46 H 0.072 0.928
47 H 0.073 0.927
48 H 0.083 0.917
49 H 0.073 0.927
50 H 0.069 0.931
Dipole moment (debyes) X Y Z Total
from point charges -5.933 11.978 8.987 16.107
hybrid contribution 1.435 -0.001 0.069 1.436
sum -4.499 11.977 9.056 15.675
Atomic orbital electron populations
1.22195 0.91695 1.05431 1.01587 1.19208 0.96670 0.94024 0.87632
1.21937 1.01359 0.94608 1.02295 1.22187 0.99887 1.04720 0.94292
1.23875 0.93118 0.92728 0.90836 1.84340 1.54373 1.41600 1.28248
1.27928 1.01593 0.81301 0.95812 1.70734 1.10186 1.26721 1.11157
1.21593 1.07003 0.94431 0.95583 1.16589 0.80039 0.81585 0.83562
1.90638 1.46647 1.78666 1.24551 1.45612 1.50997 1.07525 1.28699
1.22599 0.94871 0.87441 0.93380 0.89336 1.22323 0.93574 0.91792
0.90099 1.44459 1.21302 1.43511 1.23378 1.18980 0.94978 1.15978
1.05212 0.90684 1.24763 0.98983 0.99202 0.97497 1.69787 1.38800
1.31459 1.16525 0.86207 0.83541 0.78361 0.77695 1.21260 1.21635
1.21318 1.21405 0.90192 0.95692 0.91008 1.21841 0.96303 0.95761
0.94921 1.21722 1.01114 1.00634 0.95440 1.21681 0.96058 0.99329
1.01438 0.93661 0.91519 0.88329 0.92323 0.91488 0.92453 0.88114
0.91500 0.93348 0.73285 0.75928 0.96090 0.86924 0.93727 0.96061
0.95870 0.92906 0.92760 0.92715 0.91739 0.92723 0.93074
Number of geometries 1
Number of calculations of the screened coulomb radii 1
The total number of SCF iterations 15.
Note: The number of geometries may not
correspond to the number of cycles due to rejected geometry changes.
In the following table subtotal= G_P + SS G_CDS.
Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M
number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value
1 C -0.15 -1.98 8.18 37.16 0.30 -1.68 16
2 C 0.03 0.34 0.75 -155.66 -0.12 0.22 16
3 C -0.14 -1.55 8.05 37.16 0.30 -1.25 16
4 C -0.15 -2.33 8.18 37.16 0.30 -2.02 16
5 C 0.05 0.76 5.73 -35.08 -0.20 0.56 16
6 O -0.20 -2.58 10.19 6.51 0.07 -2.52 16
7 C 0.16 1.88 13.19 51.96 0.69 2.57 16
8 N -0.46 -7.06 11.06 -11.48 -0.13 -7.19 16
9 C -0.07 -1.12 6.78 -83.02 -0.56 -1.68 16
10 C 0.60 11.19 7.17 -12.52 -0.09 11.10 16
11 O -0.53 -10.29 9.95 5.27 0.05 -10.24 16
12 N -0.68 -12.72 4.62 -52.80 -0.24 -12.97 16
13 C 0.12 2.37 2.61 -65.78 -0.17 2.20 16
14 H 0.09 1.69 7.53 -51.93 -0.39 1.30 16
15 C 0.15 3.61 5.28 -2.47 -0.01 3.59 16
16 N -0.60 -15.15 3.40 -169.99 -0.58 -15.72 16
17 C -0.22 -6.22 10.27 -15.06 -0.15 -6.38 16
18 H 0.08 2.03 7.83 -52.49 -0.41 1.62 16
19 C -0.01 -0.25 5.49 -17.43 -0.10 -0.34 16
20 N -0.92 -27.07 10.09 55.49 0.56 -26.51 16
21 Si 0.91 22.43 29.55 -169.99 -5.02 17.40 16
22 H -0.29 -6.93 7.11 56.52 0.40 -6.53 16
23 H -0.29 -7.22 7.11 56.52 0.40 -6.82 16
24 H -0.29 -6.98 7.11 56.52 0.40 -6.58 16
25 C 0.14 2.93 6.41 -3.07 -0.02 2.91 16
26 C -0.09 -1.48 0.80 -152.67 -0.12 -1.60 16
27 C -0.13 -1.84 8.07 37.16 0.30 -1.54 16
28 C -0.13 -1.93 8.41 37.16 0.31 -1.62 16
29 H 0.04 0.52 8.12 -51.93 -0.42 0.10 16
30 H 0.07 0.78 8.07 -51.93 -0.42 0.36 16
31 H 0.10 1.53 4.67 -51.93 -0.24 1.29 16
32 H 0.06 0.63 8.14 -51.93 -0.42 0.20 16
33 H 0.07 0.62 8.14 -51.93 -0.42 0.20 16
34 H 0.06 0.57 8.14 -51.93 -0.42 0.15 16
35 H 0.10 1.89 4.62 -51.93 -0.24 1.65 16
36 H 0.07 0.90 8.07 -51.93 -0.42 0.48 16
37 H 0.05 0.71 8.13 -51.93 -0.42 0.29 16
38 H 0.25 1.48 8.06 -52.48 -0.42 1.06 16
39 H 0.40 7.46 6.76 -40.82 -0.28 7.18 16
40 H 0.02 0.55 7.80 -51.93 -0.41 0.15 16
41 H 0.11 3.19 5.88 -51.93 -0.31 2.89 16
42 H 0.25 7.31 8.31 -40.82 -0.34 6.97 16
43 H 0.02 0.44 7.76 -51.93 -0.40 0.03 16
44 H 0.02 0.48 7.84 -51.93 -0.41 0.07 16
45 H 0.05 0.69 8.14 -51.92 -0.42 0.27 16
46 H 0.05 0.68 8.14 -51.93 -0.42 0.25 16
47 H 0.05 0.78 6.42 -51.93 -0.33 0.45 16
48 H 0.06 1.10 7.57 -51.93 -0.39 0.71 16
49 H 0.05 0.73 8.14 -51.93 -0.42 0.31 16
50 H 0.05 0.69 8.14 -51.93 -0.42 0.27 16
LS Contribution 386.00 15.07 5.82 5.82
Total: -1.00 -31.75 386.00 -6.83 -38.57
By element:
Atomic # 1 Polarization: 16.33 SS G_CDS: -8.01 Total: 8.32 kcal
Atomic # 6 Polarization: 4.38 SS G_CDS: 0.66 Total: 5.03 kcal
Atomic # 7 Polarization: -62.00 SS G_CDS: -0.39 Total: -62.39 kcal
Atomic # 8 Polarization: -12.87 SS G_CDS: 0.12 Total: -12.75 kcal
Atomic # 14 Polarization: 22.43 SS G_CDS: -5.02 Total: 17.40 kcal
Total LS contribution 5.82 Total: 5.82 kcal
Total: -31.75 -6.83 -38.57 kcal
The number of atoms in the molecule is 50
The average number of expansion shells was 16.00
The maximum number of expansion shells was 16
The minimum number of expansion shells was 16
**** NOTA BENE ****
This is the net solvation energy for this exact molecular structure
(nuclear and electronic)! The standard-state solvation energy should be
obtained as the difference between the heat of formation plus delta-G solvation
for the relaxed solvated system and that for the relaxed gas-phase system.
ZINC000977468637.mol2 50
1SCF run
This is a breakdown of the solvation energy calculated
without geometric relaxation in solution:
(1) E-EN(sol) electronic-nuclear energy of solute 51.370 kcal
(2) G-P(sol) polarization free energy of solvation -31.746 kcal
(3) G-ENP(sol) elect.-nuc.-pol. free energy of system 19.624 kcal
(4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.826 kcal
(5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.572 kcal
(6) G-S(sol) free energy of system = (1) + (5) 12.797 kcal
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
Total computer time = 1.13 seconds