Wall clock time and date at job start Tue Mar 31 2020 19:00:42
AMSOL-version 7.1
by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers,
I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget,
B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar
Copyright 2004 by Regents of the University of Minnesota.
All rights reserved.
Notice: recipients of this code are asked to comply
with the user agreement in Section 1 of the documentation file.
*******************************************************************************
* 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION
* - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT)
* GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK
* TLIMIT= - A TIME OF 15. SECONDS REQUESTED
* CHARGE - CHARGE ON SYSTEM= -1
* AM1 - THE AM1 HAMILTONIAN TO BE USED
* SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED
* - CHARGE MODEL 2 WILL BE USED (CM2A)
* - THE SOLVENT IS WATER
*******************************************************************************
Atom NO. Chemical Bond length Bond angle Dihedral angle
number (k) symbol (angstroms) (degrees) (degrees)
(I) NA:I NB:NA:I NC:NB:NA:I NA NB NC
1 1 C
2 2 C 1.53000 * 1
3 3 C 1.53001 * 109.46893 * 2 1
4 4 C 1.53000 * 109.47129 * 240.00416 * 2 1 3
5 5 C 1.50696 * 109.47470 * 119.99865 * 2 1 3
6 6 O 1.34258 * 126.52887 * 241.25300 * 5 2 1
7 7 C 1.34050 * 108.22707 * 179.97438 * 6 5 2
8 8 N 1.29942 * 109.24296 * 359.76490 * 7 6 5
9 9 C 1.36059 * 108.47732 * 0.38012 * 8 7 6
10 10 C 1.47418 * 126.44838 * 179.88495 * 9 8 7
11 11 O 1.21613 * 120.00134 * 175.75132 * 10 9 8
12 12 N 1.34773 * 120.00059 * 355.47395 * 10 9 8
13 13 C 1.46501 * 120.00020 * 180.27385 * 12 10 9
14 14 H 1.08994 * 110.88515 * 325.70274 * 13 12 10
15 15 C 1.54909 * 111.00211 * 89.58838 * 13 12 10
16 16 N 1.47527 * 104.78570 * 81.08672 * 15 13 12
17 17 C 1.36934 * 125.63554 * 204.08671 * 16 15 13
18 18 H 1.08001 * 119.99955 * 180.02562 * 17 16 15
19 19 C 1.38811 * 120.00300 * 0.03542 * 17 16 15
20 20 N 1.31624 * 119.99678 * 0.02562 * 19 17 16
21 21 Si 1.86801 * 120.00253 * 180.02562 * 19 17 16
22 22 H 1.48497 * 109.46938 * 60.00360 * 21 19 17
23 23 H 1.48507 * 109.46919 * 180.02562 * 21 19 17
24 24 H 1.48498 * 109.46838 * 300.00069 * 21 19 17
25 25 C 1.47019 * 108.71402 * 24.11656 * 16 15 13
26 26 C 1.54322 * 107.27512 * 358.94600 * 25 16 15
27 27 C 1.52997 * 110.72060 * 219.44294 * 26 25 16
28 28 C 1.52999 * 110.72169 * 96.16435 * 26 25 16
29 29 H 1.08995 * 109.46908 * 308.84119 * 1 2 3
30 30 H 1.08998 * 109.47190 * 68.84997 * 1 2 3
31 31 H 1.09005 * 109.46484 * 188.84379 * 1 2 3
32 32 H 1.09005 * 109.47071 * 180.02562 * 3 2 1
33 33 H 1.08997 * 109.47314 * 300.00423 * 3 2 1
34 34 H 1.09005 * 109.47163 * 60.00431 * 3 2 1
35 35 H 1.09000 * 109.47348 * 291.59986 * 4 2 1
36 36 H 1.08995 * 109.47122 * 51.60250 * 4 2 1
37 37 H 1.09001 * 109.47312 * 171.60399 * 4 2 1
38 38 H 1.08004 * 125.37482 * 180.02562 * 7 6 5
39 39 H 0.97004 * 119.99859 * 0.27917 * 12 10 9
40 40 H 1.09005 * 110.36210 * 199.90189 * 15 13 12
41 41 H 1.08998 * 110.36511 * 322.22175 * 15 13 12
42 42 H 0.97004 * 120.00040 * 179.97438 * 20 19 17
43 43 H 1.08997 * 109.88557 * 239.52658 * 25 16 15
44 44 H 1.09002 * 110.00891 * 118.42871 * 25 16 15
45 45 H 1.09009 * 109.46903 * 173.51802 * 27 26 25
46 46 H 1.09000 * 109.46973 * 293.51523 * 27 26 25
47 47 H 1.08998 * 109.47554 * 53.52133 * 27 26 25
48 48 H 1.08996 * 109.47297 * 306.48128 * 28 26 25
49 49 H 1.09001 * 109.47029 * 66.48057 * 28 26 25
50 50 H 1.09004 * 109.47278 * 186.47820 * 28 26 25
Note: An asterisk (*) indicates this parameter was or will be optimized.
Cartesian coordinates (angstroms)
NO. Atom X Y Z
1 6 0.0000 0.0000 0.0000
2 6 1.5300 0.0000 0.0000
3 6 2.0399 1.4425 0.0000
4 6 2.0400 -0.7212 -1.2493
5 6 2.0324 -0.7103 1.2304
6 8 2.7880 -0.1814 2.2060
7 6 3.0210 -1.1345 3.1194
8 7 2.4345 -2.2338 2.7503
9 6 1.8061 -2.0102 1.5644
10 6 1.0224 -2.9897 0.7902
11 8 0.4439 -2.6423 -0.2215
12 7 0.9514 -4.2715 1.2006
13 6 0.1775 -5.2462 0.4279
14 1 -0.6999 -4.7791 -0.0193
15 6 1.0575 -5.9232 -0.6523
16 7 1.7971 -6.9757 0.0699
17 6 2.9939 -7.5179 -0.3160
18 1 3.4566 -8.2875 0.2840
19 6 3.6125 -7.0782 -1.4783
20 7 3.0489 -6.1397 -2.2091
21 14 5.2447 -7.8183 -2.0052
22 1 5.0805 -9.2790 -2.2168
23 1 5.6916 -7.1816 -3.2702
24 1 6.2596 -7.5823 -0.9472
25 6 1.0364 -7.3465 1.2721
26 6 -0.2257 -6.4592 1.3076
27 6 -0.5331 -6.0121 2.7381
28 6 -1.4218 -7.1947 0.6998
29 1 -0.3633 0.6445 0.8004
30 1 -0.3633 0.3708 -0.9584
31 1 -0.3632 -1.0155 0.1580
32 1 3.1300 1.4426 -0.0005
33 1 1.6766 1.9564 -0.8899
34 1 1.6766 1.9564 0.8901
35 1 1.8045 -1.7830 -1.1775
36 1 1.5593 -0.3013 -2.1328
37 1 3.1196 -0.5931 -1.3275
38 1 3.6007 -1.0075 4.0217
39 1 1.4128 -4.5486 2.0076
40 1 0.4327 -6.3636 -1.4293
41 1 1.7497 -5.2009 -1.0850
42 1 3.4813 -5.8321 -3.0211
43 1 1.6397 -7.1685 2.1622
44 1 0.7496 -8.3970 1.2227
45 1 -1.3556 -5.2967 2.7264
46 1 -0.8136 -6.8784 3.3372
47 1 0.3507 -5.5424 3.1698
48 1 -1.1603 -7.5532 -0.2957
49 1 -1.6875 -8.0414 1.3328
50 1 -2.2698 -6.5134 0.6295
RHF calculation, no. of doubly occupied orbitals= 64
REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN:
H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987).
REFERENCE FOR CHARGE MODEL 2:
J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885.
REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL:
J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and
D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63
P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted.
CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R
& SOLVNT=WATER
ZINC000977468637.mol2 50
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
SCF FIELD WAS ACHIEVED
Wall clock time and date at job start Tue Mar 31 2020 19:00:42
Heat of formation + Delta-G solvation = -9.462882 kcal
Electronic energy + Delta-G solvation = -31392.044156 eV
Core-core repulsion = 27421.013175 eV
Total energy + Delta-G solvation = -3971.030981 eV
No. of doubly occupied orbitals = 64
Molecular weight
(most abundant/longest-lived isotopes) = 335.200 amu
Computer time = 1.06 seconds
Orbital eigenvalues (eV)
-44.47718 -41.15522 -39.55364 -37.76430 -35.83601 -35.63116 -34.38219 -32.59969
-30.89905 -29.74628 -28.23612 -28.19692 -28.05811 -27.42944 -25.77498 -24.43832
-23.85296 -22.38055 -21.47703 -20.64521 -20.06429 -19.03824 -18.70344 -17.76933
-17.41393 -17.19507 -16.58561 -16.14538 -16.02309 -15.71715 -15.48433 -15.38094
-15.02373 -14.81611 -14.64966 -14.38605 -14.15739 -13.75421 -13.65760 -13.19057
-13.10121 -13.02763 -13.01566 -12.83912 -12.64757 -12.62927 -12.59232 -12.56042
-12.27693 -12.07324 -12.02757 -12.01254 -11.76868 -11.75374 -11.55897 -11.40315
-11.33782 -10.85479 -10.72100 -10.02851 -9.76679 -8.83526 -7.75008 -5.19658
0.10455 1.11156 1.42526 1.45765 1.52058 1.55377 2.16847 2.38380
2.48283 3.16089 3.33867 3.45274 3.56600 3.69404 3.76851 3.94681
3.95937 3.98370 4.07367 4.11966 4.41160 4.51659 4.53165 4.56070
4.72883 4.74236 4.78236 4.83659 4.86553 4.86575 4.91244 4.94715
5.00688 5.00981 5.07048 5.10281 5.19425 5.20417 5.24956 5.29760
5.32114 5.45891 5.47124 5.52027 5.54842 5.76677 5.85147 6.32088
6.38853 6.68713 7.10191 7.25679 7.79584 8.43480 9.25062
Molecular weight = 335.20amu
Principal moments of inertia in cm(-1)
A = 0.010416 B = 0.004532 C = 0.003820
Principal moments of inertia in units of 10**(-40)*gram-cm**2
A = 2687.534262 B = 6177.213251 C = 7327.780333
Net atomic charges, atomic populations, and dipole contributions
calculated with CM2
Atom NO. Type Charge No. of electrons
1 C -0.148 4.148
2 C 0.024 3.976
3 C -0.137 4.137
4 C -0.151 4.151
5 C 0.052 3.948
6 O -0.194 6.194
7 C 0.190 3.810
8 N -0.495 5.495
9 C -0.096 4.096
10 C 0.588 3.412
11 O -0.541 6.541
12 N -0.681 5.681
13 C 0.136 3.864
14 H 0.089 0.911
15 C 0.157 3.843
16 N -0.618 5.618
17 C -0.235 4.235
18 H 0.081 0.919
19 C -0.066 4.066
20 N -0.945 5.945
21 Si 0.975 3.025
22 H -0.276 1.276
23 H -0.297 1.297
24 H -0.279 1.279
25 C 0.139 3.861
26 C -0.074 4.074
27 C -0.123 4.123
28 C -0.124 4.124
29 H 0.062 0.938
30 H 0.077 0.923
31 H 0.070 0.930
32 H 0.058 0.942
33 H 0.082 0.918
34 H 0.069 0.931
35 H 0.060 0.940
36 H 0.079 0.921
37 H 0.046 0.954
38 H 0.306 0.694
39 H 0.406 0.594
40 H -0.009 1.009
41 H 0.070 0.930
42 H 0.243 0.757
43 H 0.026 0.974
44 H 0.027 0.973
45 H 0.066 0.934
46 H 0.078 0.922
47 H 0.049 0.951
48 H 0.036 0.964
49 H 0.079 0.921
50 H 0.071 0.929
For the charges calculated by CM2:
Dipole moment (debyes) X Y Z Total
from point charges -5.729 13.507 12.067 18.996
Note: The Mulliken population analysis charges presented below were not
used in the solvation calculation but are provided for completeness.
The chosen solvation model uses CM2 partial charges for calculating
solvation energies.
Net atomic charges, atomic populations, and dipole contributions
using Mulliken population analysis
Atom NO. Type Charge No. of electrons
1 C -0.204 4.204
2 C 0.023 3.977
3 C -0.194 4.194
4 C -0.208 4.208
5 C -0.006 4.006
6 O -0.080 6.080
7 C -0.039 4.039
8 N -0.224 5.224
9 C -0.214 4.214
10 C 0.375 3.625
11 O -0.421 6.421
12 N -0.330 5.330
13 C 0.030 3.970
14 H 0.107 0.893
15 C 0.031 3.969
16 N -0.344 5.344
17 C -0.365 4.365
18 H 0.098 0.902
19 C -0.259 4.259
20 N -0.595 5.595
21 Si 0.804 3.196
22 H -0.202 1.202
23 H -0.223 1.223
24 H -0.205 1.205
25 C 0.014 3.986
26 C -0.075 4.075
27 C -0.180 4.180
28 C -0.181 4.181
29 H 0.081 0.919
30 H 0.096 0.904
31 H 0.088 0.912
32 H 0.077 0.923
33 H 0.101 0.899
34 H 0.088 0.912
35 H 0.078 0.922
36 H 0.098 0.902
37 H 0.065 0.935
38 H 0.321 0.679
39 H 0.242 0.758
40 H 0.008 0.992
41 H 0.088 0.912
42 H 0.053 0.947
43 H 0.044 0.956
44 H 0.045 0.955
45 H 0.085 0.915
46 H 0.097 0.903
47 H 0.068 0.932
48 H 0.055 0.945
49 H 0.098 0.902
50 H 0.090 0.910
Dipole moment (debyes) X Y Z Total
from point charges -5.987 13.152 11.546 18.497
hybrid contribution 1.482 -0.366 -0.681 1.672
sum -4.504 12.787 10.864 17.373
Atomic orbital electron populations
1.22114 0.91418 1.04042 1.02857 1.19272 0.96896 0.95419 0.86096
1.21892 1.01322 0.92478 1.03754 1.22100 1.00007 1.02483 0.96194
1.24057 0.92836 0.92230 0.91443 1.84377 1.53907 1.41658 1.28052
1.29181 0.99143 0.79715 0.95844 1.70698 1.11881 1.28681 1.11118
1.21404 1.08432 0.94838 0.96738 1.16984 0.80016 0.81913 0.83589
1.90637 1.47209 1.79033 1.25206 1.45547 1.51332 1.07518 1.28566
1.22288 0.93615 0.88316 0.92779 0.89274 1.21962 0.92857 0.90906
0.91168 1.44689 1.21190 1.43730 1.24785 1.19377 0.96010 1.15826
1.05238 0.90161 1.25589 1.02387 0.99987 0.97908 1.70096 1.39997
1.32853 1.16532 0.85199 0.79693 0.77823 0.76910 1.20232 1.22294
1.20497 1.21612 0.91329 0.96559 0.89108 1.21831 0.95382 0.93591
0.96716 1.21661 1.01446 1.01873 0.93028 1.21672 0.95820 1.00444
1.00208 0.91939 0.90409 0.91156 0.92322 0.89862 0.91182 0.92164
0.90164 0.93496 0.67936 0.75782 0.99160 0.91241 0.94741 0.95590
0.95494 0.91545 0.90345 0.93166 0.94503 0.90242 0.90984
Number of geometries 1
Number of calculations of the screened coulomb radii 1
The total number of SCF iterations 15.
Note: The number of geometries may not
correspond to the number of cycles due to rejected geometry changes.
In the following table subtotal= G_P + SS G_CDS.
Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M
number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value
1 C -0.15 -3.74 8.18 71.98 0.59 -3.15 16
2 C 0.02 0.62 0.75 -52.93 -0.04 0.58 16
3 C -0.14 -2.63 8.05 71.98 0.58 -2.05 16
4 C -0.15 -4.69 8.18 71.98 0.59 -4.10 16
5 C 0.05 1.51 5.73 25.19 0.14 1.65 16
6 O -0.19 -4.55 10.19 0.37 0.00 -4.55 16
7 C 0.19 3.86 13.19 130.52 1.72 5.58 16
8 N -0.50 -14.73 11.06 -305.14 -3.38 -18.11 16
9 C -0.10 -3.26 6.78 40.41 0.27 -2.98 16
10 C 0.59 22.99 7.17 86.66 0.62 23.61 16
11 O -0.54 -22.45 9.95 -4.07 -0.04 -22.49 16
12 N -0.68 -26.29 4.62 -439.21 -2.03 -28.32 16
13 C 0.14 5.43 2.61 46.39 0.12 5.55 16
14 H 0.09 3.54 7.53 -2.39 -0.02 3.52 16
15 C 0.16 8.15 5.28 86.84 0.46 8.61 16
16 N -0.62 -32.26 3.40 -691.74 -2.35 -34.61 16
17 C -0.24 -13.48 10.27 84.03 0.86 -12.62 16
18 H 0.08 4.39 7.83 -2.91 -0.02 4.37 16
19 C -0.07 -3.87 5.49 84.86 0.47 -3.40 16
20 N -0.95 -58.80 10.09 21.65 0.22 -58.58 16
21 Si 0.98 47.26 29.55 68.60 2.03 49.29 16
22 H -0.28 -12.85 7.11 99.48 0.71 -12.14 16
23 H -0.30 -14.54 7.11 99.48 0.71 -13.84 16
24 H -0.28 -13.05 7.11 99.48 0.71 -12.34 16
25 C 0.14 5.68 6.41 86.73 0.56 6.23 16
26 C -0.07 -2.46 0.80 -50.99 -0.04 -2.50 16
27 C -0.12 -3.14 8.07 71.98 0.58 -2.56 16
28 C -0.12 -3.60 8.41 71.98 0.61 -3.00 16
29 H 0.06 1.33 8.12 -2.39 -0.02 1.32 16
30 H 0.08 1.75 8.07 -2.39 -0.02 1.73 16
31 H 0.07 2.23 4.67 -2.38 -0.01 2.22 16
32 H 0.06 1.12 8.14 -2.38 -0.02 1.11 16
33 H 0.08 1.32 8.14 -2.39 -0.02 1.30 16
34 H 0.07 1.18 8.14 -2.38 -0.02 1.16 16
35 H 0.06 2.41 4.62 -2.39 -0.01 2.40 16
36 H 0.08 2.19 8.07 -2.39 -0.02 2.17 16
37 H 0.05 1.41 8.13 -2.39 -0.02 1.39 16
38 H 0.31 2.14 8.06 -2.91 -0.02 2.11 16
39 H 0.41 15.22 6.76 -92.70 -0.63 14.60 16
40 H -0.01 -0.53 7.80 -2.38 -0.02 -0.55 16
41 H 0.07 4.24 5.88 -2.39 -0.01 4.23 16
42 H 0.24 14.88 8.31 -92.71 -0.77 14.11 16
43 H 0.03 1.05 7.76 -2.39 -0.02 1.03 16
44 H 0.03 1.09 7.84 -2.39 -0.02 1.07 16
45 H 0.07 1.56 8.14 -2.38 -0.02 1.54 16
46 H 0.08 1.67 8.14 -2.39 -0.02 1.65 16
47 H 0.05 1.34 6.42 -2.39 -0.02 1.33 16
48 H 0.04 1.26 7.57 -2.39 -0.02 1.25 16
49 H 0.08 1.92 8.14 -2.39 -0.02 1.91 16
50 H 0.07 1.80 8.14 -2.39 -0.02 1.78 16
Total: -1.00 -74.36 386.00 2.86 -71.49
By element:
Atomic # 1 Polarization: 30.09 SS G_CDS: 0.32 Total: 30.41 kcal
Atomic # 6 Polarization: 7.37 SS G_CDS: 8.09 Total: 15.46 kcal
Atomic # 7 Polarization: -132.08 SS G_CDS: -7.54 Total: -139.62 kcal
Atomic # 8 Polarization: -27.00 SS G_CDS: -0.04 Total: -27.04 kcal
Atomic # 14 Polarization: 47.26 SS G_CDS: 2.03 Total: 49.29 kcal
Total: -74.36 2.86 -71.49 kcal
The number of atoms in the molecule is 50
The average number of expansion shells was 16.00
The maximum number of expansion shells was 16
The minimum number of expansion shells was 16
**** NOTA BENE ****
This is the net solvation energy for this exact molecular structure
(nuclear and electronic)! The standard-state solvation energy should be
obtained as the difference between the heat of formation plus delta-G solvation
for the relaxed solvated system and that for the relaxed gas-phase system.
ZINC000977468637.mol2 50
1SCF run
This is a breakdown of the solvation energy calculated
without geometric relaxation in solution:
(1) E-EN(sol) electronic-nuclear energy of solute 62.031 kcal
(2) G-P(sol) polarization free energy of solvation -74.358 kcal
(3) G-ENP(sol) elect.-nuc.-pol. free energy of system -12.327 kcal
(4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.864 kcal
(5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -71.494 kcal
(6) G-S(sol) free energy of system = (1) + (5) -9.463 kcal
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
Total computer time = 1.07 seconds