Wall clock time and date at job start Tue Mar 31 2020 20:12:15 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50700 * 1 3 3 N 1.33696 * 126.27144 * 2 1 4 4 C 1.30613 * 108.99827 * 180.02562 * 3 2 1 5 5 C 1.50693 * 125.42810 * 179.97438 * 4 3 2 6 6 C 1.53000 * 109.46836 * 299.98068 * 5 4 3 7 7 C 1.52998 * 109.47083 * 59.97417 * 5 4 3 8 8 O 1.33670 * 109.14968 * 359.75405 * 4 3 2 9 9 C 1.35343 * 107.68519 * 0.39431 * 8 4 3 10 10 C 1.46725 * 126.64282 * 179.86991 * 9 8 4 11 11 O 1.21683 * 119.99820 * 179.68827 * 10 9 8 12 12 N 1.34774 * 120.00029 * 359.69810 * 10 9 8 13 13 C 1.46500 * 119.99914 * 179.97438 * 12 10 9 14 14 H 1.09002 * 109.47097 * 34.99981 * 13 12 10 15 15 C 1.52997 * 109.47204 * 274.99487 * 13 12 10 16 16 C 1.53002 * 109.47092 * 180.02562 * 15 13 12 17 17 C 1.53001 * 109.46963 * 60.00194 * 16 15 13 18 18 C 1.53000 * 109.46886 * 299.99499 * 17 16 15 19 19 H 1.09002 * 109.47398 * 300.00496 * 18 17 16 20 20 N 1.46499 * 109.46840 * 180.02562 * 18 17 16 21 21 C 1.36940 * 119.99991 * 85.00591 * 20 18 17 22 22 H 1.07998 * 119.99825 * 359.97438 * 21 20 18 23 23 C 1.38811 * 120.00230 * 180.02562 * 21 20 18 24 24 N 1.31613 * 119.99954 * 359.97438 * 23 21 20 25 25 Si 1.86803 * 120.00007 * 179.97438 * 23 21 20 26 26 H 1.48492 * 109.47253 * 359.97438 * 25 23 21 27 27 H 1.48503 * 109.47068 * 119.99455 * 25 23 21 28 28 H 1.48501 * 109.46760 * 239.99446 * 25 23 21 29 29 C 1.53002 * 109.47233 * 60.00670 * 18 17 16 30 30 H 1.08995 * 109.47519 * 269.97547 * 1 2 3 31 31 H 1.08998 * 109.47325 * 29.97586 * 1 2 3 32 32 H 1.09004 * 109.47130 * 149.97531 * 1 2 3 33 33 H 1.08994 * 109.47712 * 179.97438 * 5 4 3 34 34 H 1.08993 * 109.47488 * 60.00110 * 6 5 4 35 35 H 1.09006 * 109.46647 * 179.97438 * 6 5 4 36 36 H 1.08998 * 109.47061 * 299.99483 * 6 5 4 37 37 H 1.09004 * 109.46960 * 60.00171 * 7 5 4 38 38 H 1.09002 * 109.47721 * 179.97438 * 7 5 4 39 39 H 1.09005 * 109.47521 * 300.00511 * 7 5 4 40 40 H 0.96995 * 119.99814 * 359.97438 * 12 10 9 41 41 H 1.09002 * 109.47045 * 299.99966 * 15 13 12 42 42 H 1.09000 * 109.47140 * 59.99873 * 15 13 12 43 43 H 1.09000 * 109.46497 * 180.02562 * 16 15 13 44 44 H 1.09002 * 109.47067 * 299.99853 * 16 15 13 45 45 H 1.09001 * 109.46652 * 179.97438 * 17 16 15 46 46 H 1.08992 * 109.47514 * 59.99933 * 17 16 15 47 47 H 0.97002 * 120.00410 * 264.99761 * 20 18 17 48 48 H 0.97001 * 120.00026 * 180.02562 * 24 23 21 49 49 H 1.09002 * 109.47075 * 59.99068 * 29 18 17 50 50 H 1.08996 * 109.47407 * 180.02562 * 29 18 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 7 2.2980 1.0779 0.0000 4 6 3.5452 0.6901 -0.0006 5 6 4.7439 1.6032 -0.0013 6 6 4.7121 2.4854 -1.2509 7 6 4.7128 2.4866 1.2475 8 8 3.5890 -0.6459 0.0045 9 6 2.3137 -1.0991 -0.0006 10 6 1.8827 -2.5016 -0.0004 11 8 0.6967 -2.7737 0.0004 12 7 2.8005 -3.4886 -0.0010 13 6 2.3702 -4.8890 -0.0003 14 1 1.4583 -4.9892 -0.5889 15 6 2.1016 -5.3393 1.4370 16 6 1.6528 -6.8020 1.4378 17 6 2.7526 -7.6732 0.8275 18 6 3.0211 -7.2229 -0.6099 19 1 2.1092 -7.3235 -1.1985 20 7 4.0737 -8.0574 -1.1944 21 6 3.7549 -9.2586 -1.7696 22 1 2.7276 -9.5909 -1.7919 23 6 4.7523 -10.0497 -2.3230 24 7 6.0044 -9.6450 -2.2954 25 14 4.3175 -11.6885 -3.1069 26 1 2.8526 -11.9110 -3.0088 27 1 4.7222 -11.6767 -4.5357 28 1 5.0322 -12.7809 -2.3989 29 6 3.4699 -5.7602 -0.6107 30 1 -0.3634 -0.0004 1.0276 31 1 -0.3634 0.8902 -0.5134 32 1 -0.3633 -0.8898 -0.5142 33 1 5.6557 1.0060 -0.0012 34 1 3.8005 3.0827 -1.2509 35 1 5.5790 3.1463 -1.2512 36 1 4.7343 1.8561 -2.1406 37 1 4.7354 1.8581 2.1378 38 1 5.5801 3.1469 1.2473 39 1 3.8010 3.0840 1.2475 40 1 3.7459 -3.2717 -0.0019 41 1 3.0136 -5.2391 2.0256 42 1 1.3185 -4.7183 1.8720 43 1 1.4610 -7.1226 2.4618 44 1 0.7409 -6.9026 0.8491 45 1 2.4330 -8.7153 0.8285 46 1 3.6644 -7.5726 1.4161 47 1 4.9965 -7.7592 -1.1742 48 1 6.7014 -10.1976 -2.6824 49 1 4.3818 -5.6596 -0.0220 50 1 3.6608 -5.4392 -1.6347 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000981378750.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 20:12:15 Heat of formation + Delta-G solvation = -33.303917 kcal Electronic energy + Delta-G solvation = -28982.930540 eV Core-core repulsion = 25010.865734 eV Total energy + Delta-G solvation = -3972.064806 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 335.200 amu Computer time = 0.97 seconds Orbital eigenvalues (eV) -43.73246 -39.98128 -38.01477 -36.31038 -35.55461 -34.67544 -33.38358 -31.34340 -31.13657 -29.67570 -28.08126 -27.69511 -27.52006 -24.69738 -23.76191 -22.67339 -21.87077 -21.22243 -20.82348 -20.45370 -19.58709 -18.25469 -17.21444 -17.04761 -16.57381 -16.29602 -15.16156 -14.99526 -14.85823 -14.64124 -14.41377 -14.06350 -13.85789 -13.65966 -13.52251 -13.45968 -13.37080 -13.14486 -12.74050 -12.67972 -12.58096 -12.21613 -12.17216 -12.11705 -11.81722 -11.59562 -11.21230 -11.06800 -11.02248 -10.97382 -10.90776 -10.75881 -10.44302 -10.39515 -10.23373 -10.13935 -9.78146 -9.65417 -9.26090 -8.94330 -8.88239 -6.98291 -5.78768 -3.07472 0.56943 2.07685 2.12342 2.92383 2.98080 3.42146 3.48223 3.50118 3.52076 4.28086 4.39005 4.49254 4.54953 4.56051 4.71492 4.92811 5.02544 5.12650 5.14907 5.18513 5.27448 5.31776 5.33544 5.42882 5.44742 5.47238 5.56458 5.60875 5.62688 5.66194 5.70399 5.71756 5.79678 5.83269 5.93032 5.97957 6.07733 6.10312 6.22593 6.28228 6.45023 6.49385 6.56850 6.69475 6.93659 7.09609 7.19047 7.41540 7.69767 7.92153 8.39884 9.51205 10.08146 10.42833 11.44036 Molecular weight = 335.20amu Principal moments of inertia in cm(-1) A = 0.016297 B = 0.002253 C = 0.002096 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1717.739069 B =12425.576076 C =13355.673099 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.080 4.080 2 C 0.080 3.920 3 N -0.483 5.483 4 C 0.224 3.776 5 C -0.001 4.001 6 C -0.144 4.144 7 C -0.144 4.144 8 O -0.188 6.188 9 C -0.119 4.119 10 C 0.609 3.391 11 O -0.515 6.515 12 N -0.710 5.710 13 C 0.148 3.852 14 H 0.092 0.908 15 C -0.125 4.125 16 C -0.114 4.114 17 C -0.137 4.137 18 C 0.184 3.816 19 H 0.049 0.951 20 N -0.724 5.724 21 C -0.236 4.236 22 H 0.071 0.929 23 C -0.015 4.015 24 N -0.933 5.933 25 Si 0.906 3.094 26 H -0.280 1.280 27 H -0.292 1.292 28 H -0.292 1.292 29 C -0.130 4.130 30 H 0.081 0.919 31 H 0.076 0.924 32 H 0.096 0.904 33 H 0.102 0.898 34 H 0.070 0.930 35 H 0.074 0.926 36 H 0.060 0.940 37 H 0.060 0.940 38 H 0.074 0.926 39 H 0.070 0.930 40 H 0.404 0.596 41 H 0.062 0.938 42 H 0.061 0.939 43 H 0.057 0.943 44 H 0.061 0.939 45 H 0.063 0.937 46 H 0.055 0.945 47 H 0.383 0.617 48 H 0.254 0.746 49 H 0.065 0.935 50 H 0.069 0.931 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.335 25.128 7.665 26.626 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.137 4.137 2 C -0.044 4.044 3 N -0.213 5.213 4 C 0.019 3.981 5 C -0.020 4.020 6 C -0.202 4.202 7 C -0.202 4.202 8 O -0.074 6.074 9 C -0.174 4.174 10 C 0.394 3.606 11 O -0.392 6.392 12 N -0.359 5.359 13 C 0.045 3.955 14 H 0.110 0.890 15 C -0.163 4.163 16 C -0.153 4.153 17 C -0.178 4.178 18 C 0.074 3.926 19 H 0.067 0.933 20 N -0.365 5.365 21 C -0.367 4.367 22 H 0.089 0.911 23 C -0.211 4.211 24 N -0.582 5.582 25 Si 0.737 3.263 26 H -0.205 1.205 27 H -0.219 1.219 28 H -0.219 1.219 29 C -0.169 4.169 30 H 0.100 0.900 31 H 0.095 0.905 32 H 0.115 0.885 33 H 0.120 0.880 34 H 0.089 0.911 35 H 0.093 0.907 36 H 0.080 0.920 37 H 0.079 0.921 38 H 0.093 0.907 39 H 0.089 0.911 40 H 0.238 0.762 41 H 0.080 0.920 42 H 0.080 0.920 43 H 0.076 0.924 44 H 0.079 0.921 45 H 0.082 0.918 46 H 0.074 0.926 47 H 0.217 0.783 48 H 0.064 0.936 49 H 0.084 0.916 50 H 0.088 0.912 Dipole moment (debyes) X Y Z Total from point charges -5.385 25.323 7.567 26.972 hybrid contribution 1.007 -1.480 -0.364 1.827 sum -4.378 23.842 7.203 25.288 Atomic orbital electron populations 1.20389 0.85248 1.04404 1.03694 1.22078 0.98348 0.86378 0.97606 1.70273 1.00267 1.30983 1.19771 1.26576 0.95686 0.79153 0.96731 1.19788 0.90447 0.93168 0.98615 1.21854 1.03571 0.99407 0.95377 1.21854 1.03576 0.99393 0.95350 1.84457 1.29821 1.23740 1.69407 1.22994 0.81271 0.96424 1.16678 1.16310 0.85931 0.81238 0.77144 1.90856 1.15659 1.81789 1.50936 1.46098 1.09694 1.06565 1.73547 1.21155 0.99229 0.77859 0.97304 0.88997 1.21895 1.01340 0.97167 0.95912 1.21483 0.99340 0.93843 1.00602 1.22298 0.97358 0.99438 0.98682 1.20092 0.92922 0.87459 0.92175 0.93266 1.42409 1.05297 1.20197 1.68565 1.19289 0.93321 0.94949 1.29186 0.91059 1.24742 0.95374 0.99052 1.01884 1.69667 0.99167 1.38427 1.50951 0.86131 0.77453 0.83916 0.78800 1.20518 1.21893 1.21901 1.22108 0.97330 0.96463 1.00980 0.90038 0.90529 0.88536 0.88022 0.91065 0.90684 0.92043 0.92136 0.90688 0.91059 0.76187 0.91968 0.92045 0.92395 0.92064 0.91794 0.92637 0.78335 0.93586 0.91600 0.91201 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.08 -0.83 9.87 36.01 0.36 -0.47 16 2 C 0.08 0.99 7.16 -82.47 -0.59 0.40 16 3 N -0.48 -5.68 11.26 -7.07 -0.08 -5.76 16 4 C 0.22 2.32 6.82 -12.80 -0.09 2.23 16 5 C 0.00 0.00 3.39 -91.78 -0.31 -0.32 16 6 C -0.14 -0.81 9.17 37.16 0.34 -0.47 16 7 C -0.14 -0.78 9.17 37.16 0.34 -0.44 16 8 O -0.19 -2.18 10.57 4.41 0.05 -2.14 16 9 C -0.12 -1.52 7.18 -36.84 -0.26 -1.79 16 10 C 0.61 8.37 7.75 -12.83 -0.10 8.27 16 11 O -0.51 -8.08 14.46 5.20 0.08 -8.01 16 12 N -0.71 -8.95 5.07 -55.10 -0.28 -9.23 16 13 C 0.15 2.06 2.45 -67.93 -0.17 1.89 16 14 H 0.09 1.40 7.58 -51.93 -0.39 1.00 16 15 C -0.12 -1.66 5.49 -26.73 -0.15 -1.80 16 16 C -0.11 -1.60 5.92 -26.73 -0.16 -1.76 16 17 C -0.14 -2.37 5.50 -26.73 -0.15 -2.52 16 18 C 0.18 3.52 2.77 -67.93 -0.19 3.33 16 19 H 0.05 0.98 8.08 -51.93 -0.42 0.56 16 20 N -0.72 -17.69 5.12 -53.42 -0.27 -17.96 16 21 C -0.24 -6.46 9.93 -15.06 -0.15 -6.61 16 22 H 0.07 1.91 7.83 -52.49 -0.41 1.50 16 23 C -0.01 -0.42 5.50 -17.43 -0.10 -0.51 16 24 N -0.93 -27.93 13.06 55.49 0.72 -27.20 16 25 Si 0.91 22.29 29.55 -169.99 -5.02 17.27 16 26 H -0.28 -6.68 7.11 56.52 0.40 -6.28 16 27 H -0.29 -7.23 7.11 56.52 0.40 -6.83 16 28 H -0.29 -7.23 7.11 56.52 0.40 -6.83 16 29 C -0.13 -2.04 4.86 -26.73 -0.13 -2.17 16 30 H 0.08 0.76 8.14 -51.93 -0.42 0.34 16 31 H 0.08 0.68 8.14 -51.93 -0.42 0.25 16 32 H 0.10 1.09 6.47 -51.93 -0.34 0.75 16 33 H 0.10 0.53 8.14 -51.93 -0.42 0.10 16 34 H 0.07 0.46 8.14 -51.93 -0.42 0.04 16 35 H 0.07 0.27 8.14 -51.93 -0.42 -0.15 16 36 H 0.06 0.38 8.14 -51.93 -0.42 -0.04 16 37 H 0.06 0.35 8.14 -51.93 -0.42 -0.07 16 38 H 0.07 0.26 8.14 -51.93 -0.42 -0.16 16 39 H 0.07 0.45 8.14 -51.93 -0.42 0.02 16 40 H 0.40 4.45 8.40 -40.82 -0.34 4.10 16 41 H 0.06 0.80 8.14 -51.93 -0.42 0.38 16 42 H 0.06 0.83 8.14 -51.93 -0.42 0.40 16 43 H 0.06 0.74 8.14 -51.93 -0.42 0.32 16 44 H 0.06 0.85 8.14 -51.93 -0.42 0.43 16 45 H 0.06 1.21 8.14 -51.93 -0.42 0.79 16 46 H 0.05 0.98 8.14 -51.93 -0.42 0.56 16 47 H 0.38 9.93 7.80 -40.82 -0.32 9.61 16 48 H 0.25 7.37 8.31 -40.82 -0.34 7.03 16 49 H 0.07 1.00 8.14 -51.93 -0.42 0.58 16 50 H 0.07 1.15 8.14 -51.93 -0.42 0.72 16 LS Contribution 406.24 15.07 6.12 6.12 Total: -1.00 -31.79 406.24 -8.73 -40.52 By element: Atomic # 1 Polarization: 17.67 SS G_CDS: -8.54 Total: 9.12 kcal Atomic # 6 Polarization: -1.24 SS G_CDS: -1.50 Total: -2.74 kcal Atomic # 7 Polarization: -60.25 SS G_CDS: 0.09 Total: -60.16 kcal Atomic # 8 Polarization: -10.27 SS G_CDS: 0.12 Total: -10.14 kcal Atomic # 14 Polarization: 22.29 SS G_CDS: -5.02 Total: 17.27 kcal Total LS contribution 6.12 Total: 6.12 kcal Total: -31.79 -8.73 -40.52 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000981378750.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 7.219 kcal (2) G-P(sol) polarization free energy of solvation -31.793 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -24.575 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.729 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.522 kcal (6) G-S(sol) free energy of system = (1) + (5) -33.304 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.97 seconds