Wall clock time and date at job start Tue Mar 31 2020 20:12:14 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50700 * 1 3 3 N 1.33696 * 126.27144 * 2 1 4 4 C 1.30613 * 108.99827 * 180.02562 * 3 2 1 5 5 C 1.50693 * 125.42810 * 179.97438 * 4 3 2 6 6 C 1.53000 * 109.46836 * 299.98068 * 5 4 3 7 7 C 1.52998 * 109.47083 * 59.97417 * 5 4 3 8 8 O 1.33670 * 109.14968 * 359.75405 * 4 3 2 9 9 C 1.35343 * 107.68519 * 0.39431 * 8 4 3 10 10 C 1.46725 * 126.64282 * 179.86991 * 9 8 4 11 11 O 1.21683 * 119.99820 * 179.68827 * 10 9 8 12 12 N 1.34774 * 120.00029 * 359.69810 * 10 9 8 13 13 C 1.46500 * 119.99914 * 179.97438 * 12 10 9 14 14 H 1.09002 * 109.47097 * 34.99981 * 13 12 10 15 15 C 1.52997 * 109.47204 * 274.99487 * 13 12 10 16 16 C 1.53002 * 109.47092 * 180.02562 * 15 13 12 17 17 C 1.53001 * 109.46963 * 60.00194 * 16 15 13 18 18 C 1.53000 * 109.46886 * 299.99499 * 17 16 15 19 19 H 1.09002 * 109.47398 * 300.00496 * 18 17 16 20 20 N 1.46499 * 109.46840 * 180.02562 * 18 17 16 21 21 C 1.36940 * 119.99991 * 85.00591 * 20 18 17 22 22 H 1.07998 * 119.99825 * 359.97438 * 21 20 18 23 23 C 1.38811 * 120.00230 * 180.02562 * 21 20 18 24 24 N 1.31613 * 119.99954 * 359.97438 * 23 21 20 25 25 Si 1.86803 * 120.00007 * 179.97438 * 23 21 20 26 26 H 1.48492 * 109.47253 * 359.97438 * 25 23 21 27 27 H 1.48503 * 109.47068 * 119.99455 * 25 23 21 28 28 H 1.48501 * 109.46760 * 239.99446 * 25 23 21 29 29 C 1.53002 * 109.47233 * 60.00670 * 18 17 16 30 30 H 1.08995 * 109.47519 * 269.97547 * 1 2 3 31 31 H 1.08998 * 109.47325 * 29.97586 * 1 2 3 32 32 H 1.09004 * 109.47130 * 149.97531 * 1 2 3 33 33 H 1.08994 * 109.47712 * 179.97438 * 5 4 3 34 34 H 1.08993 * 109.47488 * 60.00110 * 6 5 4 35 35 H 1.09006 * 109.46647 * 179.97438 * 6 5 4 36 36 H 1.08998 * 109.47061 * 299.99483 * 6 5 4 37 37 H 1.09004 * 109.46960 * 60.00171 * 7 5 4 38 38 H 1.09002 * 109.47721 * 179.97438 * 7 5 4 39 39 H 1.09005 * 109.47521 * 300.00511 * 7 5 4 40 40 H 0.96995 * 119.99814 * 359.97438 * 12 10 9 41 41 H 1.09002 * 109.47045 * 299.99966 * 15 13 12 42 42 H 1.09000 * 109.47140 * 59.99873 * 15 13 12 43 43 H 1.09000 * 109.46497 * 180.02562 * 16 15 13 44 44 H 1.09002 * 109.47067 * 299.99853 * 16 15 13 45 45 H 1.09001 * 109.46652 * 179.97438 * 17 16 15 46 46 H 1.08992 * 109.47514 * 59.99933 * 17 16 15 47 47 H 0.97002 * 120.00410 * 264.99761 * 20 18 17 48 48 H 0.97001 * 120.00026 * 180.02562 * 24 23 21 49 49 H 1.09002 * 109.47075 * 59.99068 * 29 18 17 50 50 H 1.08996 * 109.47407 * 180.02562 * 29 18 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 7 2.2980 1.0779 0.0000 4 6 3.5452 0.6901 -0.0006 5 6 4.7439 1.6032 -0.0013 6 6 4.7121 2.4854 -1.2509 7 6 4.7128 2.4866 1.2475 8 8 3.5890 -0.6459 0.0045 9 6 2.3137 -1.0991 -0.0006 10 6 1.8827 -2.5016 -0.0004 11 8 0.6967 -2.7737 0.0004 12 7 2.8005 -3.4886 -0.0010 13 6 2.3702 -4.8890 -0.0003 14 1 1.4583 -4.9892 -0.5889 15 6 2.1016 -5.3393 1.4370 16 6 1.6528 -6.8020 1.4378 17 6 2.7526 -7.6732 0.8275 18 6 3.0211 -7.2229 -0.6099 19 1 2.1092 -7.3235 -1.1985 20 7 4.0737 -8.0574 -1.1944 21 6 3.7549 -9.2586 -1.7696 22 1 2.7276 -9.5909 -1.7919 23 6 4.7523 -10.0497 -2.3230 24 7 6.0044 -9.6450 -2.2954 25 14 4.3175 -11.6885 -3.1069 26 1 2.8526 -11.9110 -3.0088 27 1 4.7222 -11.6767 -4.5357 28 1 5.0322 -12.7809 -2.3989 29 6 3.4699 -5.7602 -0.6107 30 1 -0.3634 -0.0004 1.0276 31 1 -0.3634 0.8902 -0.5134 32 1 -0.3633 -0.8898 -0.5142 33 1 5.6557 1.0060 -0.0012 34 1 3.8005 3.0827 -1.2509 35 1 5.5790 3.1463 -1.2512 36 1 4.7343 1.8561 -2.1406 37 1 4.7354 1.8581 2.1378 38 1 5.5801 3.1469 1.2473 39 1 3.8010 3.0840 1.2475 40 1 3.7459 -3.2717 -0.0019 41 1 3.0136 -5.2391 2.0256 42 1 1.3185 -4.7183 1.8720 43 1 1.4610 -7.1226 2.4618 44 1 0.7409 -6.9026 0.8491 45 1 2.4330 -8.7153 0.8285 46 1 3.6644 -7.5726 1.4161 47 1 4.9965 -7.7592 -1.1742 48 1 6.7014 -10.1976 -2.6824 49 1 4.3818 -5.6596 -0.0220 50 1 3.6608 -5.4392 -1.6347 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000981378750.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 20:12:14 Heat of formation + Delta-G solvation = -55.084149 kcal Electronic energy + Delta-G solvation = -28983.875002 eV Core-core repulsion = 25010.865734 eV Total energy + Delta-G solvation = -3973.009267 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 335.200 amu Computer time = 1.04 seconds Orbital eigenvalues (eV) -44.60704 -41.11511 -39.32661 -36.95450 -36.52181 -36.05893 -34.87120 -32.96764 -32.17436 -30.89460 -29.58856 -28.58065 -28.11686 -25.76064 -25.43330 -23.74388 -23.12655 -22.32069 -21.71214 -21.38144 -20.93676 -19.50775 -18.86262 -18.10742 -17.59768 -17.25919 -16.58711 -16.14874 -15.92593 -15.72039 -15.48604 -15.26868 -15.13800 -15.02663 -14.85681 -14.34450 -14.28914 -14.13122 -14.07162 -13.61992 -13.43896 -13.34485 -13.09357 -12.92094 -12.85265 -12.73248 -12.33603 -12.29568 -12.21931 -12.14746 -12.03822 -11.99555 -11.98996 -11.82675 -11.68945 -11.58597 -11.41594 -11.09199 -10.89197 -10.33466 -9.87674 -9.00608 -7.94492 -5.22311 -0.35531 1.20765 1.24530 1.47198 1.47450 1.57370 1.89310 1.97147 2.56066 2.74762 3.39088 3.50515 3.56487 3.60983 3.82386 3.91272 4.00424 4.02025 4.06791 4.24234 4.28446 4.35791 4.38555 4.42861 4.49831 4.55395 4.63987 4.65308 4.74244 4.75219 4.78393 4.78928 4.89195 4.91527 4.97009 5.05618 5.07620 5.14326 5.19891 5.21053 5.29885 5.32375 5.34928 5.38085 5.49799 5.52687 5.64512 6.20281 6.28715 6.49071 6.87980 7.34626 8.10120 8.33507 9.29189 Molecular weight = 335.20amu Principal moments of inertia in cm(-1) A = 0.016297 B = 0.002253 C = 0.002096 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1717.739069 B =12425.576076 C =13355.673099 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.078 4.078 2 C 0.076 3.924 3 N -0.501 5.501 4 C 0.233 3.767 5 C -0.004 4.004 6 C -0.141 4.141 7 C -0.140 4.140 8 O -0.191 6.191 9 C -0.141 4.141 10 C 0.611 3.389 11 O -0.538 6.538 12 N -0.702 5.702 13 C 0.159 3.841 14 H 0.080 0.920 15 C -0.117 4.117 16 C -0.105 4.105 17 C -0.127 4.127 18 C 0.178 3.822 19 H 0.040 0.960 20 N -0.736 5.736 21 C -0.234 4.234 22 H 0.074 0.926 23 C -0.077 4.077 24 N -0.969 5.969 25 Si 0.968 3.032 26 H -0.267 1.267 27 H -0.294 1.294 28 H -0.294 1.294 29 C -0.116 4.116 30 H 0.091 0.909 31 H 0.090 0.910 32 H 0.085 0.915 33 H 0.120 0.880 34 H 0.060 0.940 35 H 0.101 0.899 36 H 0.053 0.947 37 H 0.055 0.945 38 H 0.100 0.900 39 H 0.060 0.940 40 H 0.412 0.588 41 H 0.072 0.928 42 H 0.066 0.934 43 H 0.077 0.923 44 H 0.062 0.938 45 H 0.043 0.957 46 H 0.052 0.948 47 H 0.373 0.627 48 H 0.250 0.750 49 H 0.074 0.926 50 H 0.060 0.940 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.418 26.579 8.498 28.252 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.135 4.135 2 C -0.048 4.048 3 N -0.230 5.230 4 C 0.027 3.973 5 C -0.023 4.023 6 C -0.199 4.199 7 C -0.198 4.198 8 O -0.079 6.079 9 C -0.196 4.196 10 C 0.397 3.603 11 O -0.418 6.418 12 N -0.352 5.352 13 C 0.055 3.945 14 H 0.098 0.902 15 C -0.156 4.156 16 C -0.144 4.144 17 C -0.168 4.168 18 C 0.069 3.931 19 H 0.058 0.942 20 N -0.376 5.376 21 C -0.366 4.366 22 H 0.092 0.908 23 C -0.269 4.269 24 N -0.620 5.620 25 Si 0.798 3.202 26 H -0.192 1.192 27 H -0.222 1.222 28 H -0.221 1.221 29 C -0.155 4.155 30 H 0.109 0.891 31 H 0.109 0.891 32 H 0.104 0.896 33 H 0.138 0.862 34 H 0.079 0.921 35 H 0.119 0.881 36 H 0.072 0.928 37 H 0.074 0.926 38 H 0.119 0.881 39 H 0.079 0.921 40 H 0.249 0.751 41 H 0.090 0.910 42 H 0.085 0.915 43 H 0.096 0.904 44 H 0.081 0.919 45 H 0.062 0.938 46 H 0.071 0.929 47 H 0.205 0.795 48 H 0.059 0.941 49 H 0.092 0.908 50 H 0.079 0.921 Dipole moment (debyes) X Y Z Total from point charges -5.505 26.801 8.420 28.627 hybrid contribution 1.027 -1.800 -0.608 2.160 sum -4.477 25.001 7.812 26.573 Atomic orbital electron populations 1.20412 0.84243 1.04502 1.04309 1.22456 0.99261 0.86502 0.96578 1.70322 1.00882 1.30842 1.20952 1.27544 0.96516 0.78995 0.94200 1.20144 0.89488 0.93036 0.99621 1.21855 1.04264 0.99286 0.94454 1.21852 1.04243 0.99259 0.94398 1.84454 1.29277 1.24416 1.69723 1.22775 0.81926 0.96046 1.18830 1.16365 0.85630 0.81683 0.76621 1.90838 1.16551 1.82295 1.52116 1.45931 1.10127 1.05820 1.73296 1.20916 0.97797 0.78272 0.97564 0.90191 1.21830 1.01949 0.96481 0.95301 1.21407 0.97932 0.93595 1.01427 1.22106 0.98435 0.98917 0.97308 1.20304 0.91205 0.88814 0.92763 0.94216 1.42591 1.05923 1.20137 1.68923 1.19623 0.93312 0.95737 1.27933 0.90816 1.25506 0.95439 1.02509 1.03421 1.69808 0.99979 1.39662 1.52584 0.85138 0.77720 0.79926 0.77412 1.19161 1.22178 1.22128 1.21891 0.98220 0.94454 1.00915 0.89083 0.89149 0.89615 0.86198 0.92114 0.88081 0.92814 0.92610 0.88107 0.92131 0.75147 0.90975 0.91544 0.90421 0.91912 0.93795 0.92914 0.79502 0.94103 0.90782 0.92091 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.08 -1.56 9.87 71.24 0.70 -0.86 16 2 C 0.08 1.84 7.16 41.83 0.30 2.14 16 3 N -0.50 -11.34 11.26 -291.07 -3.28 -14.62 16 4 C 0.23 4.53 6.82 88.29 0.60 5.13 16 5 C 0.00 -0.04 3.39 -11.54 -0.04 -0.08 16 6 C -0.14 -1.30 9.17 71.98 0.66 -0.64 16 7 C -0.14 -1.20 9.17 71.98 0.66 -0.54 16 8 O -0.19 -4.27 10.57 -7.13 -0.08 -4.35 16 9 C -0.14 -3.55 7.18 24.05 0.17 -3.37 16 10 C 0.61 16.46 7.75 86.46 0.67 17.13 16 11 O -0.54 -16.74 14.46 -4.30 -0.06 -16.80 16 12 N -0.70 -17.03 5.07 -446.46 -2.26 -19.30 16 13 C 0.16 4.25 2.45 44.99 0.11 4.36 16 14 H 0.08 2.39 7.58 -2.39 -0.02 2.37 16 15 C -0.12 -2.89 5.49 30.59 0.17 -2.72 16 16 C -0.10 -2.76 5.92 30.60 0.18 -2.58 16 17 C -0.13 -4.32 5.50 30.59 0.17 -4.15 16 18 C 0.18 6.79 2.77 44.99 0.12 6.92 16 19 H 0.04 1.59 8.08 -2.39 -0.02 1.57 16 20 N -0.74 -36.37 5.12 -322.94 -1.65 -38.03 16 21 C -0.23 -12.89 9.93 84.03 0.83 -12.05 16 22 H 0.07 3.94 7.83 -2.91 -0.02 3.92 16 23 C -0.08 -4.38 5.50 84.86 0.47 -3.92 16 24 N -0.97 -58.93 13.06 21.65 0.28 -58.65 16 25 Si 0.97 46.19 29.55 68.60 2.03 48.22 16 26 H -0.27 -12.01 7.11 99.48 0.71 -11.31 16 27 H -0.29 -14.07 7.11 99.48 0.71 -13.36 16 28 H -0.29 -14.02 7.11 99.48 0.71 -13.31 16 29 C -0.12 -3.58 4.86 30.60 0.15 -3.43 16 30 H 0.09 1.63 8.14 -2.39 -0.02 1.61 16 31 H 0.09 1.52 8.14 -2.39 -0.02 1.50 16 32 H 0.09 1.92 6.47 -2.39 -0.02 1.91 16 33 H 0.12 0.91 8.14 -2.39 -0.02 0.89 16 34 H 0.06 0.70 8.14 -2.39 -0.02 0.68 16 35 H 0.10 0.42 8.14 -2.38 -0.02 0.40 16 36 H 0.05 0.58 8.14 -2.39 -0.02 0.56 16 37 H 0.05 0.54 8.14 -2.38 -0.02 0.52 16 38 H 0.10 0.37 8.14 -2.39 -0.02 0.35 16 39 H 0.06 0.67 8.14 -2.38 -0.02 0.65 16 40 H 0.41 8.60 8.40 -92.71 -0.78 7.82 16 41 H 0.07 1.67 8.14 -2.39 -0.02 1.65 16 42 H 0.07 1.64 8.14 -2.39 -0.02 1.62 16 43 H 0.08 1.79 8.14 -2.39 -0.02 1.77 16 44 H 0.06 1.65 8.14 -2.39 -0.02 1.63 16 45 H 0.04 1.65 8.14 -2.39 -0.02 1.63 16 46 H 0.05 1.81 8.14 -2.39 -0.02 1.79 16 47 H 0.37 19.69 7.80 -92.71 -0.72 18.97 16 48 H 0.25 14.75 8.31 -92.71 -0.77 13.98 16 49 H 0.07 2.18 8.14 -2.39 -0.02 2.16 16 50 H 0.06 1.99 8.14 -2.39 -0.02 1.97 16 Total: -1.00 -68.58 406.24 0.35 -68.23 By element: Atomic # 1 Polarization: 34.50 SS G_CDS: -0.56 Total: 33.94 kcal Atomic # 6 Polarization: -4.58 SS G_CDS: 5.93 Total: 1.35 kcal Atomic # 7 Polarization: -123.68 SS G_CDS: -6.91 Total: -130.59 kcal Atomic # 8 Polarization: -21.01 SS G_CDS: -0.14 Total: -21.15 kcal Atomic # 14 Polarization: 46.19 SS G_CDS: 2.03 Total: 48.22 kcal Total: -68.58 0.35 -68.23 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000981378750.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 13.144 kcal (2) G-P(sol) polarization free energy of solvation -68.580 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -55.437 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.352 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -68.228 kcal (6) G-S(sol) free energy of system = (1) + (5) -55.084 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.04 seconds