Wall clock time and date at job start Tue Mar 31 2020 20:12:19 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50699 * 1 3 3 N 1.33692 * 126.27277 * 2 1 4 4 C 1.30615 * 108.99566 * 180.02562 * 3 2 1 5 5 C 1.50702 * 125.42202 * 179.97438 * 4 3 2 6 6 C 1.53001 * 109.47342 * 299.97027 * 5 4 3 7 7 C 1.52991 * 109.47206 * 59.97460 * 5 4 3 8 8 O 1.33660 * 109.15469 * 359.72896 * 4 3 2 9 9 C 1.35345 * 107.68514 * 0.43447 * 8 4 3 10 10 C 1.46725 * 126.64711 * 179.84501 * 9 8 4 11 11 O 1.21686 * 119.99841 * 179.68695 * 10 9 8 12 12 N 1.34769 * 119.99601 * 359.68343 * 10 9 8 13 13 C 1.46505 * 119.99686 * 180.02562 * 12 10 9 14 14 H 1.09002 * 109.47068 * 324.99893 * 13 12 10 15 15 C 1.53002 * 109.47411 * 84.99974 * 13 12 10 16 16 C 1.52996 * 109.46972 * 59.99834 * 15 13 12 17 17 C 1.53001 * 109.47486 * 60.00463 * 16 15 13 18 18 C 1.53002 * 109.46637 * 299.99742 * 17 16 15 19 19 H 1.08993 * 109.47662 * 299.99908 * 18 17 16 20 20 N 1.46504 * 109.46876 * 179.97438 * 18 17 16 21 21 C 1.36942 * 119.99382 * 85.00530 * 20 18 17 22 22 H 1.08000 * 120.00211 * 359.97438 * 21 20 18 23 23 C 1.38814 * 119.99769 * 180.02562 * 21 20 18 24 24 N 1.31618 * 119.99915 * 359.97438 * 23 21 20 25 25 Si 1.86795 * 120.00071 * 179.97438 * 23 21 20 26 26 H 1.48500 * 109.47220 * 59.99712 * 25 23 21 27 27 H 1.48500 * 109.47143 * 179.97438 * 25 23 21 28 28 H 1.48508 * 109.47059 * 299.99510 * 25 23 21 29 29 C 1.52997 * 109.47212 * 204.99833 * 13 12 10 30 30 H 1.08999 * 109.47153 * 269.96464 * 1 2 3 31 31 H 1.09005 * 109.47326 * 29.95622 * 1 2 3 32 32 H 1.09001 * 109.47251 * 149.96190 * 1 2 3 33 33 H 1.08998 * 109.46953 * 179.97438 * 5 4 3 34 34 H 1.09000 * 109.46694 * 59.99971 * 6 5 4 35 35 H 1.08996 * 109.47537 * 179.97438 * 6 5 4 36 36 H 1.09000 * 109.47039 * 300.00672 * 6 5 4 37 37 H 1.09002 * 109.47531 * 60.00277 * 7 5 4 38 38 H 1.09009 * 109.47170 * 179.97438 * 7 5 4 39 39 H 1.08998 * 109.47427 * 300.00031 * 7 5 4 40 40 H 0.97000 * 120.00680 * 0.02562 * 12 10 9 41 41 H 1.08996 * 109.47407 * 180.02562 * 15 13 12 42 42 H 1.09000 * 109.46986 * 300.00092 * 15 13 12 43 43 H 1.09001 * 109.46993 * 180.02562 * 16 15 13 44 44 H 1.09004 * 109.47298 * 300.00176 * 16 15 13 45 45 H 1.08996 * 109.46778 * 59.99584 * 17 16 15 46 46 H 1.08992 * 109.47514 * 179.97438 * 17 16 15 47 47 H 0.96998 * 120.00342 * 264.99717 * 20 18 17 48 48 H 0.97001 * 120.00197 * 180.02562 * 24 23 21 49 49 H 1.08998 * 109.47533 * 59.99637 * 29 13 12 50 50 H 1.08996 * 109.47853 * 179.97438 * 29 13 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 7 2.2979 1.0778 0.0000 4 6 3.5452 0.6899 -0.0006 5 6 4.7439 1.6032 -0.0013 6 6 4.7124 2.4853 -1.2510 7 6 4.7129 2.4866 1.2474 8 8 3.5890 -0.6460 0.0051 9 6 2.3137 -1.0992 -0.0005 10 6 1.8826 -2.5017 -0.0006 11 8 0.6966 -2.7737 -0.0003 12 7 2.8004 -3.4886 -0.0011 13 6 2.3700 -4.8890 -0.0018 14 1 1.4587 -4.9893 0.5877 15 6 2.1000 -5.3390 -1.4390 16 6 3.3792 -5.1982 -2.2663 17 6 4.4792 -6.0700 -1.6573 18 6 4.7492 -5.6200 -0.2201 19 1 5.0694 -4.5782 -0.2196 20 7 5.8021 -6.4552 0.3634 21 6 7.1187 -6.1406 0.1567 22 1 7.3810 -5.2772 -0.4367 23 6 8.1164 -6.9322 0.7091 24 7 7.7967 -7.9847 1.4318 25 14 9.9124 -6.5036 0.4266 26 1 10.1889 -5.1485 0.9675 27 1 10.7730 -7.4970 1.1178 28 1 10.2032 -6.5242 -1.0296 29 6 3.4699 -5.7608 0.6073 30 1 -0.3633 -0.0006 1.0276 31 1 -0.3634 0.8904 -0.5132 32 1 -0.3634 -0.8896 -0.5144 33 1 5.6557 1.0059 -0.0012 34 1 3.8006 3.0825 -1.2511 35 1 5.5791 3.1461 -1.2514 36 1 4.7345 1.8558 -2.1406 37 1 4.7355 1.8582 2.1378 38 1 5.5802 3.1468 1.2471 39 1 3.8011 3.0839 1.2474 40 1 3.7459 -3.2718 -0.0011 41 1 1.7794 -6.3807 -1.4394 42 1 1.3164 -4.7179 -1.8730 43 1 3.1867 -5.5183 -3.2903 44 1 3.6994 -4.1562 -2.2659 45 1 4.1589 -7.1118 -1.6578 46 1 5.3903 -5.9700 -2.2469 47 1 5.5665 -7.2308 0.8961 48 1 8.4938 -8.5377 1.8181 49 1 3.6624 -5.4404 1.6312 50 1 3.1497 -6.8027 0.6073 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000981378751.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 20:12:19 Heat of formation + Delta-G solvation = -30.407144 kcal Electronic energy + Delta-G solvation = -29775.548588 eV Core-core repulsion = 25803.609396 eV Total energy + Delta-G solvation = -3971.939192 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 335.200 amu Computer time = 0.97 seconds Orbital eigenvalues (eV) -43.62801 -40.08747 -38.01959 -36.19520 -35.40891 -34.49042 -33.11081 -31.29298 -31.13766 -29.83292 -28.03724 -27.64023 -27.58456 -24.61496 -23.76590 -22.58544 -21.95494 -21.10156 -20.95147 -20.62147 -18.90044 -18.33552 -17.18290 -17.10065 -16.48125 -15.76542 -15.47986 -14.91786 -14.82335 -14.61677 -14.44037 -14.19129 -13.80590 -13.52083 -13.49564 -13.38359 -13.26348 -13.07921 -12.58091 -12.50793 -12.50558 -12.12231 -12.10671 -11.92057 -11.79059 -11.70438 -11.47844 -11.11659 -11.03899 -10.94210 -10.90317 -10.82205 -10.43718 -10.25695 -10.22640 -10.14414 -9.79285 -9.56917 -9.19146 -8.92386 -8.82147 -7.00918 -5.80838 -3.09996 0.67052 2.19661 2.21860 3.00808 3.10199 3.40206 3.44893 3.45927 3.62540 4.39882 4.48290 4.53623 4.61031 4.64476 4.82271 4.98720 5.03788 5.12343 5.23479 5.25749 5.28637 5.42603 5.42769 5.44862 5.50645 5.53294 5.54140 5.64179 5.67880 5.69701 5.75980 5.81714 5.82422 5.88234 5.92391 6.01138 6.04860 6.13880 6.19363 6.24843 6.44922 6.50856 6.55123 6.67128 6.89939 7.04129 7.29363 7.51906 7.64665 8.00755 8.37514 9.48743 10.05732 10.40442 11.41655 Molecular weight = 335.20amu Principal moments of inertia in cm(-1) A = 0.009882 B = 0.003376 C = 0.002697 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2832.806623 B = 8290.952351 C =10379.424857 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.079 4.079 2 C 0.078 3.922 3 N -0.484 5.484 4 C 0.226 3.774 5 C -0.002 4.002 6 C -0.143 4.143 7 C -0.144 4.144 8 O -0.185 6.185 9 C -0.118 4.118 10 C 0.609 3.391 11 O -0.521 6.521 12 N -0.703 5.703 13 C 0.151 3.849 14 H 0.088 0.912 15 C -0.128 4.128 16 C -0.116 4.116 17 C -0.136 4.136 18 C 0.180 3.820 19 H 0.040 0.960 20 N -0.724 5.724 21 C -0.241 4.241 22 H 0.069 0.931 23 C -0.012 4.012 24 N -0.932 5.932 25 Si 0.906 3.094 26 H -0.286 1.286 27 H -0.291 1.291 28 H -0.286 1.286 29 C -0.134 4.134 30 H 0.080 0.920 31 H 0.075 0.925 32 H 0.095 0.905 33 H 0.103 0.897 34 H 0.070 0.930 35 H 0.074 0.926 36 H 0.060 0.940 37 H 0.060 0.940 38 H 0.074 0.926 39 H 0.070 0.930 40 H 0.408 0.592 41 H 0.073 0.927 42 H 0.062 0.938 43 H 0.054 0.946 44 H 0.054 0.946 45 H 0.057 0.943 46 H 0.061 0.939 47 H 0.384 0.616 48 H 0.256 0.744 49 H 0.070 0.930 50 H 0.079 0.921 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -11.626 18.068 -4.047 21.863 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.136 4.136 2 C -0.046 4.046 3 N -0.214 5.214 4 C 0.020 3.980 5 C -0.022 4.022 6 C -0.201 4.201 7 C -0.201 4.201 8 O -0.071 6.071 9 C -0.173 4.173 10 C 0.394 3.606 11 O -0.400 6.400 12 N -0.355 5.355 13 C 0.047 3.953 14 H 0.107 0.893 15 C -0.166 4.166 16 C -0.155 4.155 17 C -0.177 4.177 18 C 0.070 3.930 19 H 0.058 0.942 20 N -0.364 5.364 21 C -0.372 4.372 22 H 0.087 0.913 23 C -0.208 4.208 24 N -0.580 5.580 25 Si 0.737 3.263 26 H -0.213 1.213 27 H -0.217 1.217 28 H -0.213 1.213 29 C -0.173 4.173 30 H 0.099 0.901 31 H 0.094 0.906 32 H 0.114 0.886 33 H 0.121 0.879 34 H 0.089 0.911 35 H 0.093 0.907 36 H 0.079 0.921 37 H 0.079 0.921 38 H 0.093 0.907 39 H 0.089 0.911 40 H 0.245 0.755 41 H 0.092 0.908 42 H 0.080 0.920 43 H 0.073 0.927 44 H 0.072 0.928 45 H 0.076 0.924 46 H 0.080 0.920 47 H 0.218 0.782 48 H 0.066 0.934 49 H 0.089 0.911 50 H 0.098 0.902 Dipole moment (debyes) X Y Z Total from point charges -12.393 18.474 -4.056 22.613 hybrid contribution 1.791 -0.762 -0.004 1.947 sum -10.602 17.712 -4.060 21.038 Atomic orbital electron populations 1.20368 0.85342 1.04241 1.03631 1.22052 0.98277 0.86419 0.97858 1.70267 1.00256 1.30953 1.19941 1.26572 0.95641 0.79189 0.96585 1.19801 0.90601 0.93205 0.98562 1.21844 1.03483 0.99377 0.95401 1.21848 1.03470 0.99386 0.95445 1.84489 1.29745 1.23700 1.69157 1.22982 0.81328 0.96427 1.16603 1.16313 0.85874 0.81322 0.77092 1.90830 1.15702 1.81909 1.51539 1.46152 1.10085 1.06286 1.72934 1.21074 0.98377 0.78838 0.97049 0.89349 1.21908 0.98096 1.01632 0.94962 1.21515 0.95347 1.00201 0.98401 1.22284 0.97321 0.99057 0.99027 1.20147 0.87603 0.94621 0.90641 0.94175 1.42401 1.01220 1.31600 1.61205 1.19174 0.82790 1.08569 1.26658 0.91310 1.24732 0.97912 0.97704 1.00439 1.69645 1.32044 1.17809 1.38546 0.86295 0.85149 0.77313 0.77585 1.21277 1.21677 1.21268 1.22142 0.95227 0.99856 1.00053 0.90105 0.90630 0.88634 0.87877 0.91136 0.90711 0.92090 0.92052 0.90705 0.91132 0.75523 0.90810 0.91964 0.92707 0.92764 0.92439 0.92040 0.78214 0.93427 0.91128 0.90204 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.08 -0.85 9.87 36.01 0.36 -0.50 16 2 C 0.08 1.04 7.16 -82.47 -0.59 0.44 16 3 N -0.48 -6.20 11.26 -7.07 -0.08 -6.28 16 4 C 0.23 2.67 6.82 -12.79 -0.09 2.58 16 5 C 0.00 -0.02 3.39 -91.77 -0.31 -0.33 16 6 C -0.14 -0.99 9.18 37.16 0.34 -0.64 16 7 C -0.14 -1.01 9.17 37.15 0.34 -0.67 16 8 O -0.18 -2.48 10.57 4.43 0.05 -2.43 16 9 C -0.12 -1.66 7.18 -36.84 -0.26 -1.92 16 10 C 0.61 8.83 7.75 -12.84 -0.10 8.73 16 11 O -0.52 -8.24 14.46 5.20 0.08 -8.16 16 12 N -0.70 -9.73 4.23 -55.10 -0.23 -9.97 16 13 C 0.15 2.07 2.78 -67.93 -0.19 1.88 16 14 H 0.09 1.21 7.58 -51.93 -0.39 0.82 16 15 C -0.13 -1.67 5.60 -26.73 -0.15 -1.82 16 16 C -0.12 -1.63 5.76 -26.73 -0.15 -1.78 16 17 C -0.14 -2.33 5.50 -26.73 -0.15 -2.48 16 18 C 0.18 3.34 2.60 -67.92 -0.18 3.16 16 19 H 0.04 0.76 6.44 -51.93 -0.33 0.42 16 20 N -0.72 -17.37 5.12 -53.42 -0.27 -17.64 16 21 C -0.24 -6.47 9.93 -15.06 -0.15 -6.62 16 22 H 0.07 1.79 7.83 -52.49 -0.41 1.38 16 23 C -0.01 -0.33 5.50 -17.43 -0.10 -0.42 16 24 N -0.93 -27.63 13.06 55.49 0.72 -26.91 16 25 Si 0.91 21.96 29.55 -169.99 -5.02 16.93 16 26 H -0.29 -6.81 7.11 56.52 0.40 -6.41 16 27 H -0.29 -7.14 7.11 56.52 0.40 -6.74 16 28 H -0.29 -6.83 7.11 56.52 0.40 -6.43 16 29 C -0.13 -2.08 5.08 -26.73 -0.14 -2.22 16 30 H 0.08 0.80 8.14 -51.93 -0.42 0.38 16 31 H 0.07 0.70 8.14 -51.93 -0.42 0.28 16 32 H 0.10 1.10 6.47 -51.93 -0.34 0.76 16 33 H 0.10 0.76 8.14 -51.93 -0.42 0.33 16 34 H 0.07 0.53 8.14 -51.93 -0.42 0.10 16 35 H 0.07 0.37 8.14 -51.93 -0.42 -0.06 16 36 H 0.06 0.45 8.14 -51.93 -0.42 0.02 16 37 H 0.06 0.47 8.14 -51.93 -0.42 0.05 16 38 H 0.07 0.38 8.14 -51.92 -0.42 -0.04 16 39 H 0.07 0.53 8.14 -51.93 -0.42 0.11 16 40 H 0.41 5.69 6.66 -40.82 -0.27 5.42 16 41 H 0.07 0.90 8.14 -51.93 -0.42 0.48 16 42 H 0.06 0.82 8.14 -51.93 -0.42 0.40 16 43 H 0.05 0.71 8.14 -51.93 -0.42 0.29 16 44 H 0.05 0.77 7.60 -51.93 -0.39 0.37 16 45 H 0.06 1.00 8.14 -51.93 -0.42 0.58 16 46 H 0.06 1.16 8.14 -51.93 -0.42 0.74 16 47 H 0.38 9.86 7.80 -40.82 -0.32 9.54 16 48 H 0.26 7.39 8.31 -40.82 -0.34 7.05 16 49 H 0.07 1.15 8.14 -51.93 -0.42 0.72 16 50 H 0.08 1.21 8.14 -51.93 -0.42 0.79 16 LS Contribution 401.81 15.07 6.06 6.06 Total: -1.00 -31.07 401.81 -8.58 -39.65 By element: Atomic # 1 Polarization: 19.73 SS G_CDS: -8.36 Total: 11.37 kcal Atomic # 6 Polarization: -1.10 SS G_CDS: -1.51 Total: -2.61 kcal Atomic # 7 Polarization: -60.94 SS G_CDS: 0.14 Total: -60.80 kcal Atomic # 8 Polarization: -10.72 SS G_CDS: 0.12 Total: -10.60 kcal Atomic # 14 Polarization: 21.96 SS G_CDS: -5.02 Total: 16.93 kcal Total LS contribution 6.06 Total: 6.06 kcal Total: -31.07 -8.58 -39.65 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000981378751.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 9.245 kcal (2) G-P(sol) polarization free energy of solvation -31.071 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -21.827 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.580 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.652 kcal (6) G-S(sol) free energy of system = (1) + (5) -30.407 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.97 seconds