Wall clock time and date at job start Tue Mar 31 2020 20:12:18 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50699 * 1 3 3 N 1.33692 * 126.27277 * 2 1 4 4 C 1.30615 * 108.99566 * 180.02562 * 3 2 1 5 5 C 1.50702 * 125.42202 * 179.97438 * 4 3 2 6 6 C 1.53001 * 109.47342 * 299.97027 * 5 4 3 7 7 C 1.52991 * 109.47206 * 59.97460 * 5 4 3 8 8 O 1.33660 * 109.15469 * 359.72896 * 4 3 2 9 9 C 1.35345 * 107.68514 * 0.43447 * 8 4 3 10 10 C 1.46725 * 126.64711 * 179.84501 * 9 8 4 11 11 O 1.21686 * 119.99841 * 179.68695 * 10 9 8 12 12 N 1.34769 * 119.99601 * 359.68343 * 10 9 8 13 13 C 1.46505 * 119.99686 * 180.02562 * 12 10 9 14 14 H 1.09002 * 109.47068 * 324.99893 * 13 12 10 15 15 C 1.53002 * 109.47411 * 84.99974 * 13 12 10 16 16 C 1.52996 * 109.46972 * 59.99834 * 15 13 12 17 17 C 1.53001 * 109.47486 * 60.00463 * 16 15 13 18 18 C 1.53002 * 109.46637 * 299.99742 * 17 16 15 19 19 H 1.08993 * 109.47662 * 299.99908 * 18 17 16 20 20 N 1.46504 * 109.46876 * 179.97438 * 18 17 16 21 21 C 1.36942 * 119.99382 * 85.00530 * 20 18 17 22 22 H 1.08000 * 120.00211 * 359.97438 * 21 20 18 23 23 C 1.38814 * 119.99769 * 180.02562 * 21 20 18 24 24 N 1.31618 * 119.99915 * 359.97438 * 23 21 20 25 25 Si 1.86795 * 120.00071 * 179.97438 * 23 21 20 26 26 H 1.48500 * 109.47220 * 59.99712 * 25 23 21 27 27 H 1.48500 * 109.47143 * 179.97438 * 25 23 21 28 28 H 1.48508 * 109.47059 * 299.99510 * 25 23 21 29 29 C 1.52997 * 109.47212 * 204.99833 * 13 12 10 30 30 H 1.08999 * 109.47153 * 269.96464 * 1 2 3 31 31 H 1.09005 * 109.47326 * 29.95622 * 1 2 3 32 32 H 1.09001 * 109.47251 * 149.96190 * 1 2 3 33 33 H 1.08998 * 109.46953 * 179.97438 * 5 4 3 34 34 H 1.09000 * 109.46694 * 59.99971 * 6 5 4 35 35 H 1.08996 * 109.47537 * 179.97438 * 6 5 4 36 36 H 1.09000 * 109.47039 * 300.00672 * 6 5 4 37 37 H 1.09002 * 109.47531 * 60.00277 * 7 5 4 38 38 H 1.09009 * 109.47170 * 179.97438 * 7 5 4 39 39 H 1.08998 * 109.47427 * 300.00031 * 7 5 4 40 40 H 0.97000 * 120.00680 * 0.02562 * 12 10 9 41 41 H 1.08996 * 109.47407 * 180.02562 * 15 13 12 42 42 H 1.09000 * 109.46986 * 300.00092 * 15 13 12 43 43 H 1.09001 * 109.46993 * 180.02562 * 16 15 13 44 44 H 1.09004 * 109.47298 * 300.00176 * 16 15 13 45 45 H 1.08996 * 109.46778 * 59.99584 * 17 16 15 46 46 H 1.08992 * 109.47514 * 179.97438 * 17 16 15 47 47 H 0.96998 * 120.00342 * 264.99717 * 20 18 17 48 48 H 0.97001 * 120.00197 * 180.02562 * 24 23 21 49 49 H 1.08998 * 109.47533 * 59.99637 * 29 13 12 50 50 H 1.08996 * 109.47853 * 179.97438 * 29 13 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 7 2.2979 1.0778 0.0000 4 6 3.5452 0.6899 -0.0006 5 6 4.7439 1.6032 -0.0013 6 6 4.7124 2.4853 -1.2510 7 6 4.7129 2.4866 1.2474 8 8 3.5890 -0.6460 0.0051 9 6 2.3137 -1.0992 -0.0005 10 6 1.8826 -2.5017 -0.0006 11 8 0.6966 -2.7737 -0.0003 12 7 2.8004 -3.4886 -0.0011 13 6 2.3700 -4.8890 -0.0018 14 1 1.4587 -4.9893 0.5877 15 6 2.1000 -5.3390 -1.4390 16 6 3.3792 -5.1982 -2.2663 17 6 4.4792 -6.0700 -1.6573 18 6 4.7492 -5.6200 -0.2201 19 1 5.0694 -4.5782 -0.2196 20 7 5.8021 -6.4552 0.3634 21 6 7.1187 -6.1406 0.1567 22 1 7.3810 -5.2772 -0.4367 23 6 8.1164 -6.9322 0.7091 24 7 7.7967 -7.9847 1.4318 25 14 9.9124 -6.5036 0.4266 26 1 10.1889 -5.1485 0.9675 27 1 10.7730 -7.4970 1.1178 28 1 10.2032 -6.5242 -1.0296 29 6 3.4699 -5.7608 0.6073 30 1 -0.3633 -0.0006 1.0276 31 1 -0.3634 0.8904 -0.5132 32 1 -0.3634 -0.8896 -0.5144 33 1 5.6557 1.0059 -0.0012 34 1 3.8006 3.0825 -1.2511 35 1 5.5791 3.1461 -1.2514 36 1 4.7345 1.8558 -2.1406 37 1 4.7355 1.8582 2.1378 38 1 5.5802 3.1468 1.2471 39 1 3.8011 3.0839 1.2474 40 1 3.7459 -3.2718 -0.0011 41 1 1.7794 -6.3807 -1.4394 42 1 1.3164 -4.7179 -1.8730 43 1 3.1867 -5.5183 -3.2903 44 1 3.6994 -4.1562 -2.2659 45 1 4.1589 -7.1118 -1.6578 46 1 5.3903 -5.9700 -2.2469 47 1 5.5665 -7.2308 0.8961 48 1 8.4938 -8.5377 1.8181 49 1 3.6624 -5.4404 1.6312 50 1 3.1497 -6.8027 0.6073 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000981378751.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 20:12:18 Heat of formation + Delta-G solvation = -50.980447 kcal Electronic energy + Delta-G solvation = -29776.440713 eV Core-core repulsion = 25803.609396 eV Total energy + Delta-G solvation = -3972.831318 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 335.200 amu Computer time = 1.04 seconds Orbital eigenvalues (eV) -44.60151 -41.26589 -39.30296 -36.94916 -36.43043 -36.02830 -34.51000 -32.96608 -32.16412 -31.04620 -29.60391 -28.67759 -28.12913 -25.74551 -25.43180 -23.70363 -23.12782 -22.48798 -22.00882 -21.43554 -20.20514 -19.50780 -19.02452 -18.10695 -17.35742 -17.04347 -16.82392 -16.30760 -15.93456 -15.73427 -15.59546 -15.21943 -15.06331 -15.03741 -14.81625 -14.32399 -14.19306 -14.09276 -13.91179 -13.56249 -13.36442 -13.11709 -13.10142 -13.07113 -12.89869 -12.77856 -12.73739 -12.34139 -12.27892 -12.21198 -12.10098 -11.99316 -11.97255 -11.82409 -11.63458 -11.50166 -11.25264 -11.04303 -10.85484 -10.29593 -9.85675 -8.99759 -7.93351 -5.21478 -0.34108 1.24801 1.25214 1.47411 1.49545 1.55623 1.91616 2.03892 2.56349 2.75168 3.39757 3.50450 3.57793 3.66539 3.84043 3.88566 3.90774 4.01073 4.08013 4.26380 4.27307 4.32311 4.38406 4.41782 4.52699 4.62876 4.66550 4.68463 4.75543 4.77293 4.78231 4.78637 4.87849 4.89465 4.91805 5.04743 5.06231 5.14553 5.19935 5.20456 5.28286 5.32554 5.35975 5.39547 5.48838 5.52706 5.62357 6.21030 6.28870 6.49158 6.88406 7.35177 8.11251 8.34140 9.29864 Molecular weight = 335.20amu Principal moments of inertia in cm(-1) A = 0.009882 B = 0.003376 C = 0.002697 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2832.806623 B = 8290.952351 C =10379.424857 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.076 4.076 2 C 0.077 3.923 3 N -0.498 5.498 4 C 0.231 3.769 5 C -0.006 4.006 6 C -0.139 4.139 7 C -0.140 4.140 8 O -0.195 6.195 9 C -0.144 4.144 10 C 0.612 3.388 11 O -0.537 6.537 12 N -0.702 5.702 13 C 0.158 3.842 14 H 0.095 0.905 15 C -0.121 4.121 16 C -0.106 4.106 17 C -0.127 4.127 18 C 0.176 3.824 19 H 0.038 0.962 20 N -0.736 5.736 21 C -0.238 4.238 22 H 0.074 0.926 23 C -0.074 4.074 24 N -0.969 5.969 25 Si 0.968 3.032 26 H -0.277 1.277 27 H -0.298 1.298 28 H -0.279 1.279 29 C -0.122 4.122 30 H 0.089 0.911 31 H 0.091 0.909 32 H 0.088 0.912 33 H 0.114 0.886 34 H 0.063 0.937 35 H 0.099 0.901 36 H 0.053 0.947 37 H 0.051 0.949 38 H 0.100 0.900 39 H 0.063 0.937 40 H 0.407 0.593 41 H 0.087 0.913 42 H 0.067 0.933 43 H 0.070 0.930 44 H 0.053 0.947 45 H 0.053 0.947 46 H 0.039 0.961 47 H 0.373 0.627 48 H 0.250 0.750 49 H 0.061 0.939 50 H 0.085 0.915 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -11.823 19.862 -4.892 23.626 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.133 4.133 2 C -0.047 4.047 3 N -0.227 5.227 4 C 0.025 3.975 5 C -0.025 4.025 6 C -0.196 4.196 7 C -0.197 4.197 8 O -0.083 6.083 9 C -0.199 4.199 10 C 0.398 3.602 11 O -0.417 6.417 12 N -0.352 5.352 13 C 0.054 3.946 14 H 0.113 0.887 15 C -0.160 4.160 16 C -0.144 4.144 17 C -0.167 4.167 18 C 0.068 3.932 19 H 0.056 0.944 20 N -0.376 5.376 21 C -0.370 4.370 22 H 0.092 0.908 23 C -0.266 4.266 24 N -0.620 5.620 25 Si 0.797 3.203 26 H -0.203 1.203 27 H -0.224 1.224 28 H -0.205 1.205 29 C -0.161 4.161 30 H 0.108 0.892 31 H 0.109 0.891 32 H 0.107 0.893 33 H 0.132 0.868 34 H 0.082 0.918 35 H 0.118 0.882 36 H 0.073 0.927 37 H 0.071 0.929 38 H 0.118 0.882 39 H 0.082 0.918 40 H 0.243 0.757 41 H 0.105 0.895 42 H 0.086 0.914 43 H 0.089 0.911 44 H 0.071 0.929 45 H 0.071 0.929 46 H 0.058 0.942 47 H 0.205 0.795 48 H 0.059 0.941 49 H 0.080 0.920 50 H 0.104 0.896 Dipole moment (debyes) X Y Z Total from point charges -12.621 20.311 -4.932 24.416 hybrid contribution 1.819 -1.215 0.243 2.201 sum -10.802 19.095 -4.690 22.434 Atomic orbital electron populations 1.20415 0.83942 1.04643 1.04276 1.22488 0.99331 0.86345 0.96579 1.70315 1.00685 1.30830 1.20918 1.27493 0.96556 0.78971 0.94453 1.20135 0.89476 0.93110 0.99828 1.21838 1.04321 0.99196 0.94258 1.21845 1.04329 0.99212 0.94324 1.84483 1.29639 1.24528 1.69605 1.22910 0.81797 0.96400 1.18755 1.16332 0.85640 0.81589 0.76663 1.90813 1.16187 1.82276 1.52419 1.46119 1.09956 1.06279 1.72883 1.21012 0.97583 0.78418 0.97607 0.88743 1.21873 0.97555 1.02560 0.93978 1.21418 0.94505 0.99337 0.99181 1.22098 0.97572 0.99471 0.97554 1.20358 0.87564 0.93532 0.91741 0.94384 1.42601 1.01596 1.31902 1.61476 1.19547 0.84193 1.08003 1.25224 0.90818 1.25493 1.01843 0.98112 1.01174 1.69800 1.32757 1.19134 1.40306 0.85298 0.80425 0.77040 0.77547 1.20350 1.22389 1.20550 1.21985 0.94290 1.00703 0.99079 0.89227 0.89054 0.89312 0.86818 0.91818 0.88186 0.92744 0.92935 0.88165 0.91792 0.75653 0.89480 0.91449 0.91089 0.92851 0.92855 0.94200 0.79519 0.94120 0.92032 0.89637 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.08 -1.56 9.87 71.24 0.70 -0.86 16 2 C 0.08 1.98 7.16 41.83 0.30 2.28 16 3 N -0.50 -12.32 11.26 -291.07 -3.28 -15.60 16 4 C 0.23 5.25 6.82 88.29 0.60 5.86 16 5 C -0.01 -0.09 3.39 -11.54 -0.04 -0.13 16 6 C -0.14 -1.63 9.18 71.98 0.66 -0.97 16 7 C -0.14 -1.71 9.17 71.98 0.66 -1.05 16 8 O -0.20 -5.16 10.57 -7.07 -0.07 -5.24 16 9 C -0.14 -3.97 7.18 24.05 0.17 -3.80 16 10 C 0.61 17.34 7.75 86.46 0.67 18.01 16 11 O -0.54 -16.51 14.46 -4.30 -0.06 -16.58 16 12 N -0.70 -18.87 4.23 -446.46 -1.89 -20.76 16 13 C 0.16 4.12 2.78 44.99 0.13 4.24 16 14 H 0.09 2.43 7.58 -2.39 -0.02 2.42 16 15 C -0.12 -2.92 5.60 30.59 0.17 -2.75 16 16 C -0.11 -2.78 5.76 30.59 0.18 -2.60 16 17 C -0.13 -4.24 5.50 30.60 0.17 -4.07 16 18 C 0.18 6.48 2.60 44.99 0.12 6.60 16 19 H 0.04 1.42 6.44 -2.39 -0.02 1.41 16 20 N -0.74 -35.67 5.12 -322.92 -1.65 -37.33 16 21 C -0.24 -12.83 9.93 84.03 0.83 -12.00 16 22 H 0.07 3.82 7.83 -2.91 -0.02 3.80 16 23 C -0.07 -4.17 5.50 84.86 0.47 -3.70 16 24 N -0.97 -58.47 13.06 21.65 0.28 -58.19 16 25 Si 0.97 45.33 29.55 68.60 2.03 47.36 16 26 H -0.28 -12.46 7.11 99.48 0.71 -11.75 16 27 H -0.30 -14.15 7.11 99.48 0.71 -13.44 16 28 H -0.28 -12.64 7.11 99.48 0.71 -11.93 16 29 C -0.12 -3.71 5.08 30.60 0.16 -3.55 16 30 H 0.09 1.68 8.14 -2.39 -0.02 1.66 16 31 H 0.09 1.55 8.14 -2.38 -0.02 1.54 16 32 H 0.09 1.97 6.47 -2.39 -0.02 1.95 16 33 H 0.11 1.45 8.14 -2.39 -0.02 1.43 16 34 H 0.06 0.85 8.14 -2.39 -0.02 0.83 16 35 H 0.10 0.68 8.14 -2.39 -0.02 0.66 16 36 H 0.05 0.71 8.14 -2.39 -0.02 0.70 16 37 H 0.05 0.74 8.14 -2.39 -0.02 0.72 16 38 H 0.10 0.73 8.14 -2.38 -0.02 0.71 16 39 H 0.06 0.88 8.14 -2.39 -0.02 0.86 16 40 H 0.41 11.17 6.66 -92.71 -0.62 10.55 16 41 H 0.09 1.90 8.14 -2.39 -0.02 1.88 16 42 H 0.07 1.62 8.14 -2.39 -0.02 1.60 16 43 H 0.07 1.67 8.14 -2.39 -0.02 1.65 16 44 H 0.05 1.42 7.60 -2.38 -0.02 1.40 16 45 H 0.05 1.82 8.14 -2.39 -0.02 1.80 16 46 H 0.04 1.49 8.14 -2.39 -0.02 1.47 16 47 H 0.37 19.51 7.80 -92.71 -0.72 18.79 16 48 H 0.25 14.74 8.31 -92.71 -0.77 13.97 16 49 H 0.06 1.99 8.14 -2.39 -0.02 1.97 16 50 H 0.09 2.52 8.14 -2.39 -0.02 2.50 16 Total: -1.00 -66.59 401.81 0.91 -65.68 By element: Atomic # 1 Polarization: 39.52 SS G_CDS: -0.39 Total: 39.13 kcal Atomic # 6 Polarization: -4.42 SS G_CDS: 5.94 Total: 1.52 kcal Atomic # 7 Polarization: -125.34 SS G_CDS: -6.54 Total: -131.87 kcal Atomic # 8 Polarization: -21.68 SS G_CDS: -0.14 Total: -21.81 kcal Atomic # 14 Polarization: 45.33 SS G_CDS: 2.03 Total: 47.36 kcal Total: -66.59 0.91 -65.68 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000981378751.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 14.696 kcal (2) G-P(sol) polarization free energy of solvation -66.585 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -51.889 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.909 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -65.677 kcal (6) G-S(sol) free energy of system = (1) + (5) -50.980 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.04 seconds