Wall clock time and date at job start Tue Mar 31 2020 20:01:46 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50705 * 1 3 3 N 1.33691 * 126.27098 * 2 1 4 4 C 1.30615 * 108.99458 * 180.25490 * 3 2 1 5 5 C 1.50708 * 125.42437 * 179.78933 * 4 3 2 6 6 C 1.52993 * 109.47128 * 89.97303 * 5 4 3 7 7 C 1.53002 * 109.46987 * 175.00014 * 6 5 4 8 8 C 1.52999 * 109.47437 * 294.99871 * 6 5 4 9 9 O 1.33661 * 109.15413 * 359.76262 * 4 3 2 10 10 C 1.35345 * 107.68552 * 0.02562 * 9 4 3 11 11 C 1.46720 * 126.64629 * 179.97438 * 10 9 4 12 12 O 1.21682 * 120.00439 * 187.09042 * 11 10 9 13 13 N 1.34784 * 119.99868 * 7.09494 * 11 10 9 14 14 C 1.48205 * 119.96966 * 176.47104 * 13 11 10 15 15 C 1.47137 * 110.20163 * 102.58110 * 14 13 11 16 16 C 1.53509 * 112.03081 * 58.36047 * 15 14 13 17 17 N 1.43465 * 107.89231 * 281.58905 * 16 15 14 18 18 C 1.36940 * 118.93616 * 273.56078 * 17 16 15 19 19 H 1.07990 * 120.00456 * 34.43801 * 18 17 16 20 20 C 1.38815 * 119.99693 * 214.44249 * 18 17 16 21 21 N 1.31628 * 119.99683 * 355.85686 * 20 18 17 22 22 Si 1.86796 * 120.00041 * 175.86156 * 20 18 17 23 23 H 1.48501 * 109.47232 * 59.99748 * 22 20 18 24 24 H 1.48499 * 109.47101 * 179.97438 * 22 20 18 25 25 H 1.48500 * 109.47227 * 299.99592 * 22 20 18 26 26 C 1.48846 * 122.12012 * 93.57746 * 17 16 15 27 27 C 1.43619 * 119.96798 * 356.49200 * 13 11 10 28 28 H 1.08999 * 109.46972 * 270.13852 * 1 2 3 29 29 H 1.08998 * 109.46882 * 30.13818 * 1 2 3 30 30 H 1.09000 * 109.46860 * 150.13761 * 1 2 3 31 31 H 1.09003 * 109.46842 * 209.97572 * 5 4 3 32 32 H 1.09002 * 109.46528 * 329.96905 * 5 4 3 33 33 H 1.09003 * 109.47192 * 55.00384 * 6 5 4 34 34 H 1.09003 * 109.46852 * 60.00162 * 7 6 5 35 35 H 1.08998 * 109.46942 * 179.97438 * 7 6 5 36 36 H 1.08998 * 109.46915 * 299.99933 * 7 6 5 37 37 H 1.09003 * 109.47349 * 300.00417 * 8 6 5 38 38 H 1.09007 * 109.47084 * 60.00242 * 8 6 5 39 39 H 1.08998 * 109.47612 * 180.02562 * 8 6 5 40 40 H 1.08994 * 109.32628 * 222.76229 * 14 13 11 41 41 H 1.09004 * 109.32457 * 342.40709 * 14 13 11 42 42 H 1.09002 * 109.01100 * 178.81875 * 15 14 13 43 43 H 1.09002 * 109.01182 * 297.60115 * 15 14 13 44 44 H 1.09003 * 109.83742 * 161.96858 * 16 15 14 45 45 H 1.09002 * 109.79826 * 41.18342 * 16 15 14 46 46 H 0.96996 * 119.99775 * 180.02562 * 21 20 18 47 47 H 1.09006 * 109.48433 * 200.63764 * 26 17 16 48 48 H 1.09007 * 109.49076 * 80.61416 * 26 17 16 49 49 H 1.09008 * 108.87404 * 31.44381 * 27 13 11 50 50 H 1.08998 * 108.87513 * 149.88416 * 27 13 11 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5071 0.0000 0.0000 3 7 2.2980 1.0779 0.0000 4 6 3.5452 0.6900 -0.0055 5 6 4.7440 1.6032 -0.0119 6 6 5.1560 1.9141 1.4283 7 6 6.4452 2.7381 1.4234 8 6 4.0449 2.7096 2.1163 9 8 3.5890 -0.6459 -0.0039 10 6 2.3137 -1.0991 0.0022 11 6 1.8827 -2.5016 0.0054 12 8 0.7038 -2.7762 -0.1191 13 7 2.7926 -3.4859 0.1464 14 6 2.3494 -4.8978 0.2281 15 6 2.5760 -5.5767 -1.0574 16 6 4.0522 -5.5378 -1.4768 17 7 4.3234 -4.2358 -2.0149 18 6 4.0782 -4.0031 -3.3419 19 1 3.2457 -4.4874 -3.8303 20 6 4.9000 -3.1446 -4.0593 21 7 5.8645 -2.4915 -3.4464 22 14 4.6370 -2.9163 -5.8945 23 1 3.2696 -2.3901 -6.1370 24 1 5.6378 -1.9543 -6.4221 25 1 4.7941 -4.2224 -6.5835 26 6 4.8629 -3.1300 -1.1773 27 6 4.1908 -3.1655 0.2176 28 1 -0.3633 0.0025 1.0277 29 1 -0.3633 0.8887 -0.5160 30 1 -0.3633 -0.8912 -0.5117 31 1 5.5701 1.1148 -0.5288 32 1 4.4914 2.5307 -0.5259 33 1 5.3229 0.9817 1.9678 34 1 6.2783 3.6704 0.8840 35 1 6.7385 2.9599 2.4495 36 1 7.2368 2.1713 0.9333 37 1 3.8781 3.6420 1.5768 38 1 3.1264 2.1226 2.1199 39 1 4.3386 2.9315 3.1423 40 1 2.9124 -5.4079 1.0096 41 1 1.2870 -4.9289 0.4700 42 1 2.2634 -6.6172 -0.9694 43 1 1.9752 -5.0909 -1.8263 44 1 4.2412 -6.2970 -2.2358 45 1 4.6873 -5.7177 -0.6094 46 1 6.4385 -1.8914 -3.9476 47 1 4.6529 -2.1743 -1.6577 48 1 5.9403 -3.2512 -1.0649 49 1 4.3053 -2.1894 0.6892 50 1 4.6930 -3.9129 0.8319 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000982120343.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 20:01:46 Heat of formation + Delta-G solvation = -11.042013 kcal Electronic energy + Delta-G solvation = -31522.674312 eV Core-core repulsion = 27551.574855 eV Total energy + Delta-G solvation = -3971.099457 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 335.200 amu Computer time = 1.15 seconds Orbital eigenvalues (eV) -44.53011 -41.09144 -38.72469 -37.53391 -36.53257 -35.81575 -34.38230 -32.96103 -32.53456 -29.76204 -29.38911 -28.34382 -27.97106 -26.89194 -25.55370 -24.20515 -23.03943 -22.45739 -21.49865 -21.02559 -20.69166 -18.89895 -18.23201 -17.99047 -17.53332 -17.17611 -16.79883 -16.27458 -16.04187 -15.84825 -15.49428 -15.12472 -15.01660 -14.80917 -14.62307 -14.30537 -14.19589 -13.96109 -13.91691 -13.71553 -13.39653 -13.27327 -13.21059 -13.04688 -12.83302 -12.72722 -12.55764 -12.41402 -12.24495 -12.11107 -12.04308 -11.87978 -11.77545 -11.73626 -11.62781 -11.53606 -11.47280 -11.14088 -10.53332 -9.98275 -9.54043 -8.52593 -7.89083 -5.41470 -0.22505 1.30382 1.38097 1.39926 1.40394 1.46635 1.97123 2.11528 2.46239 2.83289 3.25941 3.48029 3.66202 3.72817 3.84664 3.94462 3.96948 4.12416 4.16597 4.29762 4.33923 4.45955 4.48974 4.54899 4.58889 4.62635 4.65893 4.69416 4.77578 4.82878 4.86708 4.88898 4.90757 5.00729 5.01668 5.06861 5.09689 5.23264 5.24605 5.27554 5.33436 5.44111 5.46113 5.47452 5.60617 5.72026 5.74737 6.26806 6.43540 6.55661 6.94368 7.18893 7.93029 8.34817 9.14276 Molecular weight = 335.20amu Principal moments of inertia in cm(-1) A = 0.009597 B = 0.005021 C = 0.004131 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2916.901734 B = 5575.316485 C = 6776.203514 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.073 4.073 2 C 0.065 3.935 3 N -0.498 5.498 4 C 0.221 3.779 5 C -0.027 4.027 6 C -0.086 4.086 7 C -0.141 4.141 8 C -0.144 4.144 9 O -0.178 6.178 10 C -0.133 4.133 11 C 0.602 3.398 12 O -0.553 6.553 13 N -0.574 5.574 14 C 0.128 3.872 15 C -0.157 4.157 16 C 0.158 3.842 17 N -0.608 5.608 18 C -0.267 4.267 19 H 0.047 0.953 20 C -0.033 4.033 21 N -0.923 5.923 22 Si 0.952 3.048 23 H -0.290 1.290 24 H -0.287 1.287 25 H -0.275 1.275 26 C 0.183 3.817 27 C 0.083 3.917 28 H 0.095 0.905 29 H 0.088 0.912 30 H 0.079 0.921 31 H 0.101 0.899 32 H 0.119 0.881 33 H 0.068 0.932 34 H 0.067 0.933 35 H 0.071 0.929 36 H 0.060 0.940 37 H 0.064 0.936 38 H 0.035 0.965 39 H 0.068 0.932 40 H 0.104 0.896 41 H 0.082 0.918 42 H 0.093 0.907 43 H 0.026 0.974 44 H 0.039 0.961 45 H 0.058 0.942 46 H 0.250 0.750 47 H 0.044 0.956 48 H 0.021 0.979 49 H 0.085 0.915 50 H 0.092 0.908 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.957 6.303 13.682 15.095 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.130 4.130 2 C -0.059 4.059 3 N -0.228 5.228 4 C 0.016 3.984 5 C -0.064 4.064 6 C -0.105 4.105 7 C -0.198 4.198 8 C -0.202 4.202 9 O -0.065 6.065 10 C -0.188 4.188 11 C 0.390 3.610 12 O -0.435 6.435 13 N -0.302 5.302 14 C 0.008 3.992 15 C -0.197 4.197 16 C 0.031 3.969 17 N -0.331 5.331 18 C -0.398 4.398 19 H 0.065 0.935 20 C -0.229 4.229 21 N -0.568 5.568 22 Si 0.781 3.219 23 H -0.217 1.217 24 H -0.213 1.213 25 H -0.201 1.201 26 C 0.057 3.943 27 C -0.042 4.042 28 H 0.113 0.887 29 H 0.107 0.893 30 H 0.098 0.902 31 H 0.120 0.880 32 H 0.137 0.863 33 H 0.086 0.914 34 H 0.086 0.914 35 H 0.090 0.910 36 H 0.079 0.921 37 H 0.083 0.917 38 H 0.054 0.946 39 H 0.087 0.913 40 H 0.122 0.878 41 H 0.101 0.899 42 H 0.111 0.889 43 H 0.045 0.955 44 H 0.057 0.943 45 H 0.076 0.924 46 H 0.060 0.940 47 H 0.062 0.938 48 H 0.039 0.961 49 H 0.102 0.898 50 H 0.110 0.890 Dipole moment (debyes) X Y Z Total from point charges -1.521 6.804 13.582 15.267 hybrid contribution 0.172 -0.565 -1.628 1.732 sum -1.349 6.240 11.954 13.552 Atomic orbital electron populations 1.20362 0.84185 1.04157 1.04248 1.22432 0.99260 0.86564 0.97690 1.70339 1.00655 1.30668 1.21118 1.27346 0.96341 0.80015 0.94688 1.20641 0.89231 0.95853 1.00718 1.21089 0.97068 1.00029 0.92334 1.21787 0.95009 0.99899 1.03109 1.21846 0.97236 1.00154 1.00924 1.84755 1.29062 1.23666 1.69025 1.22873 0.81934 0.96347 1.17655 1.16635 0.85455 0.82175 0.76752 1.90730 1.17189 1.82391 1.53234 1.47437 1.06607 1.07125 1.69063 1.20847 1.01429 0.78492 0.98457 1.21648 1.00238 1.00704 0.97141 1.20438 0.93045 0.86628 0.96828 1.43836 1.76149 1.07021 1.06083 1.19194 1.07514 1.26099 0.87012 0.93516 1.25837 0.96114 1.00003 1.00963 1.70079 1.21053 1.30400 1.35235 0.85599 0.76670 0.77621 0.82045 1.21650 1.21281 1.20068 1.21634 0.93683 0.91521 0.87436 1.22320 0.80441 1.02000 0.99438 0.88695 0.89297 0.90217 0.88030 0.86251 0.91380 0.91405 0.91039 0.92064 0.91662 0.94554 0.91332 0.87805 0.89923 0.88872 0.95500 0.94300 0.92418 0.94023 0.93781 0.96147 0.89773 0.89014 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.07 -2.17 9.95 71.24 0.71 -1.46 16 2 C 0.06 2.34 7.16 41.83 0.30 2.63 16 3 N -0.50 -16.91 10.52 -291.06 -3.06 -19.97 16 4 C 0.22 7.17 6.80 88.29 0.60 7.77 16 5 C -0.03 -0.62 5.32 29.85 0.16 -0.47 16 6 C -0.09 -1.62 2.91 -10.80 -0.03 -1.65 16 7 C -0.14 -1.99 9.19 71.98 0.66 -1.32 16 8 C -0.14 -2.71 9.00 71.98 0.65 -2.06 16 9 O -0.18 -6.65 6.60 -7.07 -0.05 -6.70 16 10 C -0.13 -5.23 6.77 24.04 0.16 -5.07 16 11 C 0.60 24.48 7.64 86.46 0.66 25.14 16 12 O -0.55 -23.77 14.23 -4.29 -0.06 -23.83 16 13 N -0.57 -21.18 2.45 -835.89 -2.05 -23.23 16 14 C 0.13 3.98 5.69 84.23 0.48 4.46 16 15 C -0.16 -5.42 5.61 28.94 0.16 -5.26 16 16 C 0.16 6.21 5.63 87.11 0.49 6.70 16 17 N -0.61 -29.81 2.53 -698.64 -1.77 -31.57 16 18 C -0.27 -14.94 9.19 84.03 0.77 -14.16 16 19 H 0.05 2.68 7.83 -2.92 -0.02 2.66 16 20 C -0.03 -1.83 5.30 84.86 0.45 -1.38 16 21 N -0.92 -52.73 10.61 21.65 0.23 -52.50 16 22 Si 0.95 45.87 29.56 68.60 2.03 47.90 16 23 H -0.29 -14.12 7.11 99.48 0.71 -13.41 16 24 H -0.29 -13.60 7.11 99.48 0.71 -12.90 16 25 H -0.27 -12.83 7.11 99.48 0.71 -12.12 16 26 C 0.18 8.49 5.01 86.57 0.43 8.93 16 27 C 0.08 3.00 4.83 87.55 0.42 3.42 16 28 H 0.09 2.42 8.14 -2.39 -0.02 2.40 16 29 H 0.09 2.32 8.14 -2.39 -0.02 2.30 16 30 H 0.08 2.65 6.35 -2.39 -0.02 2.64 16 31 H 0.10 2.41 8.14 -2.39 -0.02 2.39 16 32 H 0.12 2.46 8.14 -2.39 -0.02 2.44 16 33 H 0.07 1.38 8.14 -2.39 -0.02 1.37 16 34 H 0.07 0.84 8.14 -2.39 -0.02 0.82 16 35 H 0.07 0.85 8.14 -2.39 -0.02 0.83 16 36 H 0.06 0.88 8.14 -2.39 -0.02 0.86 16 37 H 0.06 1.13 8.14 -2.39 -0.02 1.11 16 38 H 0.04 0.86 6.81 -2.38 -0.02 0.84 16 39 H 0.07 1.07 8.14 -2.39 -0.02 1.05 16 40 H 0.10 2.47 8.05 -2.39 -0.02 2.45 16 41 H 0.08 2.57 7.16 -2.38 -0.02 2.55 16 42 H 0.09 2.56 8.14 -2.39 -0.02 2.54 16 43 H 0.03 1.15 7.90 -2.39 -0.02 1.13 16 44 H 0.04 1.58 8.02 -2.39 -0.02 1.56 16 45 H 0.06 1.99 7.59 -2.39 -0.02 1.97 16 46 H 0.25 13.93 8.31 -92.71 -0.77 13.16 16 47 H 0.04 2.37 5.88 -2.38 -0.01 2.36 16 48 H 0.02 1.01 7.95 -2.38 -0.02 0.99 16 49 H 0.08 2.97 4.97 -2.38 -0.01 2.95 16 50 H 0.09 2.77 7.73 -2.39 -0.02 2.75 16 Total: -1.00 -69.25 387.93 3.27 -65.98 By element: Atomic # 1 Polarization: 16.78 SS G_CDS: 0.93 Total: 17.70 kcal Atomic # 6 Polarization: 19.14 SS G_CDS: 7.08 Total: 26.22 kcal Atomic # 7 Polarization: -120.62 SS G_CDS: -6.65 Total: -127.27 kcal Atomic # 8 Polarization: -30.42 SS G_CDS: -0.11 Total: -30.53 kcal Atomic # 14 Polarization: 45.87 SS G_CDS: 2.03 Total: 47.90 kcal Total: -69.25 3.27 -65.98 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000982120343.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 54.936 kcal (2) G-P(sol) polarization free energy of solvation -69.252 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -14.315 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.273 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -65.978 kcal (6) G-S(sol) free energy of system = (1) + (5) -11.042 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.15 seconds