Wall clock time and date at job start Tue Mar 31 2020 19:02:16 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50700 * 1 3 3 O 1.34258 * 126.52657 * 2 1 4 4 C 1.34052 * 108.22534 * 180.26186 * 3 2 1 5 5 C 1.50695 * 125.37774 * 179.69524 * 4 3 2 6 6 C 1.53005 * 109.47394 * 300.04349 * 5 4 3 7 7 C 1.53003 * 109.47213 * 60.04423 * 5 4 3 8 8 N 1.29936 * 109.24164 * 359.73729 * 4 3 2 9 9 C 1.36065 * 108.48045 * 359.97438 * 8 4 3 10 10 C 1.47418 * 126.44701 * 180.02562 * 9 8 4 11 11 O 1.21616 * 119.99935 * 174.08987 * 10 9 8 12 12 N 1.34772 * 120.00133 * 354.09193 * 10 9 8 13 13 C 1.46936 * 120.62931 * 173.02230 * 12 10 9 14 14 C 1.53189 * 108.89347 * 126.29883 * 13 12 10 15 15 C 1.53353 * 109.14949 * 54.57455 * 14 13 12 16 16 N 1.46503 * 109.40526 * 178.68228 * 15 14 13 17 17 C 1.46499 * 119.99967 * 60.12144 * 16 15 14 18 18 C 1.36932 * 119.99996 * 240.12337 * 16 15 14 19 19 H 1.08002 * 120.00173 * 25.77195 * 18 16 15 20 20 C 1.38818 * 119.99997 * 205.77917 * 18 16 15 21 21 N 1.31614 * 119.99631 * 15.05222 * 20 18 16 22 22 Si 1.86798 * 119.99775 * 195.04889 * 20 18 16 23 23 H 1.48499 * 109.46815 * 94.98009 * 22 20 18 24 24 H 1.48497 * 109.47009 * 214.97605 * 22 20 18 25 25 H 1.48498 * 109.47431 * 334.97766 * 22 20 18 26 26 C 1.53036 * 109.60836 * 298.71112 * 15 14 13 27 27 C 1.46926 * 120.63364 * 352.99873 * 12 10 9 28 28 H 1.08998 * 109.47157 * 270.18564 * 1 2 3 29 29 H 1.09002 * 109.46929 * 30.18885 * 1 2 3 30 30 H 1.09004 * 109.47218 * 150.18761 * 1 2 3 31 31 H 1.08999 * 109.47235 * 180.02562 * 5 4 3 32 32 H 1.08999 * 109.46855 * 59.99859 * 6 5 4 33 33 H 1.08998 * 109.47145 * 179.97438 * 6 5 4 34 34 H 1.08993 * 109.46871 * 300.00342 * 6 5 4 35 35 H 1.08999 * 109.46863 * 59.99786 * 7 5 4 36 36 H 1.08999 * 109.46935 * 180.02562 * 7 5 4 37 37 H 1.08999 * 109.47035 * 300.00141 * 7 5 4 38 38 H 1.08997 * 109.58566 * 246.15587 * 13 12 10 39 39 H 1.09000 * 109.58669 * 6.43755 * 13 12 10 40 40 H 1.09000 * 109.49696 * 174.65884 * 14 13 12 41 41 H 1.08997 * 109.49738 * 294.75462 * 14 13 12 42 42 H 1.09001 * 109.43028 * 58.76267 * 15 14 13 43 43 H 1.09009 * 109.46979 * 95.95193 * 17 16 15 44 44 H 1.08999 * 109.47461 * 215.94936 * 17 16 15 45 45 H 1.09001 * 109.47547 * 335.95075 * 17 16 15 46 46 H 0.97003 * 119.99666 * 180.02562 * 21 20 18 47 47 H 1.09003 * 109.50167 * 301.42656 * 26 15 14 48 48 H 1.09004 * 109.52409 * 181.33776 * 26 15 14 49 49 H 1.08995 * 109.58221 * 353.41587 * 27 12 10 50 50 H 1.08999 * 109.58653 * 113.70100 * 27 12 10 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 8 2.3061 1.0789 0.0000 4 6 3.5788 0.6579 -0.0058 5 6 4.7929 1.5505 -0.0144 6 6 4.7695 2.4316 -1.2651 7 6 4.7839 2.4359 1.2334 8 7 3.6001 -0.6412 -0.0038 9 6 2.3169 -1.0937 0.0041 10 6 1.8853 -2.5032 0.0093 11 8 0.7062 -2.7777 0.1247 12 7 2.7974 -3.4878 -0.1137 13 6 2.4053 -4.8953 0.0419 14 6 2.8596 -5.6765 -1.1950 15 6 4.3633 -5.4591 -1.4031 16 7 4.8100 -6.2291 -2.5667 17 6 4.2296 -5.9660 -3.8858 18 6 5.7699 -7.1947 -2.4211 19 1 5.9037 -7.6839 -1.4676 20 6 6.5714 -7.5447 -3.4992 21 7 6.6234 -6.7675 -4.5601 22 14 7.5758 -9.1186 -3.4441 23 1 6.8194 -10.2120 -4.1056 24 1 8.8639 -8.9089 -4.1526 25 1 7.8427 -9.4863 -2.0303 26 6 4.6394 -3.9724 -1.6390 27 6 4.2026 -3.1742 -0.4066 28 1 -0.3633 0.0033 1.0276 29 1 -0.3633 0.8883 -0.5168 30 1 -0.3634 -0.8917 -0.5109 31 1 5.6944 0.9378 -0.0182 32 1 3.8680 3.0444 -1.2609 33 1 5.6474 3.0775 -1.2710 34 1 4.7759 1.8009 -2.1539 35 1 4.8006 1.8082 2.1244 36 1 5.6619 3.0818 1.2270 37 1 3.8825 3.0486 1.2376 38 1 2.8798 -5.3106 0.9310 39 1 1.3219 -4.9641 0.1401 40 1 2.6587 -6.7378 -1.0490 41 1 2.3164 -5.3200 -2.0702 42 1 4.9039 -5.7929 -0.5174 43 1 4.8746 -5.2811 -4.4365 44 1 4.1398 -6.9024 -4.4366 45 1 3.2428 -5.5189 -3.7661 46 1 7.1832 -7.0123 -5.3136 47 1 4.0795 -3.6320 -2.5101 48 1 5.7055 -3.8226 -1.8103 49 1 4.3048 -2.1077 -0.6069 50 1 4.8234 -3.4468 0.4469 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000985428191.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 19:02:16 Heat of formation + Delta-G solvation = 9.415561 kcal Electronic energy + Delta-G solvation = -30146.307963 eV Core-core repulsion = 26176.095613 eV Total energy + Delta-G solvation = -3970.212350 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 335.200 amu Computer time = 1.32 seconds Orbital eigenvalues (eV) -43.65699 -39.79525 -37.43818 -36.10437 -35.19382 -34.77199 -32.18690 -32.03376 -30.63430 -29.72505 -27.61858 -27.47869 -25.93411 -25.12418 -23.70392 -23.19961 -22.39643 -21.89047 -21.03623 -19.48832 -18.55435 -17.23138 -17.12664 -16.69869 -16.39195 -15.72965 -15.37000 -14.93941 -14.87884 -14.64831 -13.97545 -13.89599 -13.75403 -13.57526 -13.28469 -13.24843 -13.16477 -12.93266 -12.83626 -12.61035 -12.35530 -12.16888 -11.97011 -11.73819 -11.60030 -11.52795 -11.43906 -11.32690 -10.94005 -10.83511 -10.73645 -10.44974 -10.34939 -10.16303 -10.06673 -9.86399 -9.66375 -9.31984 -8.96827 -8.51627 -8.31316 -6.65036 -5.67175 -3.15842 0.97608 1.87054 2.27132 3.09785 3.31354 3.40519 3.47242 3.48489 3.60558 4.35091 4.48215 4.53334 4.59478 4.60326 4.83859 5.01537 5.17485 5.19455 5.25814 5.30861 5.37055 5.39347 5.41530 5.42988 5.51611 5.60794 5.63346 5.68974 5.72626 5.76717 5.79573 5.82648 5.88225 5.98112 6.06327 6.25450 6.37846 6.51453 6.53555 6.62613 6.79407 6.86360 7.07619 7.12656 7.33047 7.38401 7.63915 7.77808 7.84908 8.24519 8.46785 9.28445 9.92642 10.44326 11.36268 Molecular weight = 335.20amu Principal moments of inertia in cm(-1) A = 0.014926 B = 0.002947 C = 0.002621 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1875.459582 B = 9498.260520 C =10681.653916 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.072 4.072 2 C 0.034 3.966 3 O -0.194 6.194 4 C 0.198 3.802 5 C 0.001 3.999 6 C -0.151 4.151 7 C -0.149 4.149 8 N -0.449 5.449 9 C -0.066 4.066 10 C 0.599 3.401 11 O -0.548 6.548 12 N -0.585 5.585 13 C 0.114 3.886 14 C -0.145 4.145 15 C 0.178 3.822 16 N -0.594 5.594 17 C 0.160 3.840 18 C -0.255 4.255 19 H 0.066 0.934 20 C 0.003 3.997 21 N -0.903 5.903 22 Si 0.902 3.098 23 H -0.289 1.289 24 H -0.292 1.292 25 H -0.279 1.279 26 C -0.141 4.141 27 C 0.081 3.919 28 H 0.091 0.909 29 H 0.078 0.922 30 H 0.111 0.889 31 H 0.117 0.883 32 H 0.062 0.938 33 H 0.074 0.926 34 H 0.064 0.936 35 H 0.062 0.938 36 H 0.074 0.926 37 H 0.062 0.938 38 H 0.066 0.934 39 H 0.086 0.914 40 H 0.073 0.927 41 H 0.060 0.940 42 H 0.062 0.938 43 H 0.032 0.968 44 H 0.032 0.968 45 H 0.001 0.999 46 H 0.251 0.749 47 H 0.054 0.946 48 H 0.075 0.925 49 H 0.130 0.870 50 H 0.060 0.940 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -7.733 20.008 10.538 23.900 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.128 4.128 2 C -0.022 4.022 3 O -0.081 6.081 4 C -0.010 4.010 5 C -0.018 4.018 6 C -0.209 4.209 7 C -0.207 4.207 8 N -0.179 5.179 9 C -0.186 4.186 10 C 0.386 3.614 11 O -0.427 6.427 12 N -0.316 5.316 13 C -0.008 4.008 14 C -0.185 4.185 15 C 0.070 3.930 16 N -0.316 5.316 17 C 0.016 3.984 18 C -0.385 4.385 19 H 0.084 0.916 20 C -0.195 4.195 21 N -0.548 5.548 22 Si 0.732 3.268 23 H -0.216 1.216 24 H -0.219 1.219 25 H -0.204 1.204 26 C -0.181 4.181 27 C -0.042 4.042 28 H 0.109 0.891 29 H 0.097 0.903 30 H 0.129 0.871 31 H 0.135 0.865 32 H 0.081 0.919 33 H 0.093 0.907 34 H 0.084 0.916 35 H 0.081 0.919 36 H 0.093 0.907 37 H 0.081 0.919 38 H 0.084 0.916 39 H 0.104 0.896 40 H 0.092 0.908 41 H 0.079 0.921 42 H 0.080 0.920 43 H 0.050 0.950 44 H 0.051 0.949 45 H 0.019 0.981 46 H 0.061 0.939 47 H 0.073 0.927 48 H 0.093 0.907 49 H 0.147 0.853 50 H 0.079 0.921 Dipole moment (debyes) X Y Z Total from point charges -7.688 19.440 10.422 23.359 hybrid contribution 0.235 -0.582 -0.205 0.660 sum -7.453 18.858 10.217 22.706 Atomic orbital electron populations 1.20543 0.82592 1.05179 1.04536 1.23686 0.95045 0.83255 1.00201 1.84280 1.17915 1.36184 1.69753 1.26389 0.84020 0.90425 1.00141 1.19817 0.89932 0.94370 0.97671 1.21907 1.03116 0.99578 0.96291 1.21895 1.03132 0.99488 0.96222 1.70677 1.21172 1.08169 1.17848 1.21522 0.88659 0.95630 1.12747 1.16755 0.85118 0.82556 0.76956 1.90741 1.16371 1.83062 1.52534 1.47953 1.09821 1.06075 1.67721 1.21709 1.01183 0.79294 0.98633 1.22509 0.99713 0.99687 0.96595 1.20396 0.91417 0.89627 0.91606 1.43924 1.44067 1.40478 1.03092 1.20732 0.92109 0.99065 0.86534 1.19210 1.10111 1.11538 0.97639 0.91606 1.25053 0.97836 0.98777 0.97875 1.70069 1.41606 1.35977 1.07142 0.86277 0.79428 0.83576 0.77505 1.21627 1.21858 1.20430 1.22465 1.01725 0.97545 0.96409 1.22725 0.79268 1.04289 0.97927 0.89106 0.90309 0.87106 0.86478 0.91899 0.90701 0.91648 0.91865 0.90723 0.91898 0.91582 0.89582 0.90850 0.92088 0.92002 0.94988 0.94901 0.98082 0.93877 0.92678 0.90691 0.85318 0.92116 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.07 -0.68 9.82 36.01 0.35 -0.33 16 2 C 0.03 0.43 7.44 -35.08 -0.26 0.17 16 3 O -0.19 -2.24 10.73 6.50 0.07 -2.17 16 4 C 0.20 2.26 6.81 -13.08 -0.09 2.17 16 5 C 0.00 0.01 3.39 -91.77 -0.31 -0.30 16 6 C -0.15 -0.99 9.18 37.16 0.34 -0.65 16 7 C -0.15 -0.90 9.18 37.16 0.34 -0.56 16 8 N -0.45 -6.26 7.81 -7.66 -0.06 -6.32 16 9 C -0.07 -0.98 6.68 -83.02 -0.55 -1.53 16 10 C 0.60 9.93 7.67 -12.52 -0.10 9.84 16 11 O -0.55 -9.66 14.31 5.26 0.08 -9.58 16 12 N -0.59 -9.66 2.97 -174.03 -0.52 -10.18 16 13 C 0.11 1.82 6.43 -3.71 -0.02 1.80 16 14 C -0.14 -2.64 5.35 -26.45 -0.14 -2.78 16 15 C 0.18 3.69 2.55 -67.73 -0.17 3.52 16 16 N -0.59 -15.02 2.80 -173.25 -0.48 -15.50 16 17 C 0.16 4.04 8.07 59.85 0.48 4.52 16 18 C -0.26 -7.06 9.53 -15.06 -0.14 -7.21 16 19 H 0.07 1.79 7.86 -52.49 -0.41 1.37 16 20 C 0.00 0.09 5.07 -17.43 -0.09 0.01 16 21 N -0.90 -26.62 10.99 55.49 0.61 -26.01 16 22 Si 0.90 22.03 29.58 -169.99 -5.03 17.00 16 23 H -0.29 -7.09 7.11 56.52 0.40 -6.68 16 24 H -0.29 -7.19 7.11 56.52 0.40 -6.79 16 25 H -0.28 -6.64 7.11 56.52 0.40 -6.24 16 26 C -0.14 -2.70 5.34 -26.61 -0.14 -2.85 16 27 C 0.08 1.31 6.11 -3.71 -0.02 1.29 16 28 H 0.09 0.74 8.14 -51.93 -0.42 0.32 16 29 H 0.08 0.56 8.14 -51.93 -0.42 0.13 16 30 H 0.11 1.20 6.63 -51.93 -0.34 0.86 16 31 H 0.12 0.86 8.14 -51.93 -0.42 0.44 16 32 H 0.06 0.40 8.14 -51.93 -0.42 -0.02 16 33 H 0.07 0.35 8.14 -51.93 -0.42 -0.07 16 34 H 0.06 0.50 8.14 -51.93 -0.42 0.07 16 35 H 0.06 0.42 8.14 -51.93 -0.42 -0.01 16 36 H 0.07 0.32 8.14 -51.93 -0.42 -0.11 16 37 H 0.06 0.38 8.14 -51.93 -0.42 -0.04 16 38 H 0.07 0.97 8.14 -51.93 -0.42 0.55 16 39 H 0.09 1.36 7.00 -51.93 -0.36 1.00 16 40 H 0.07 1.33 8.14 -51.93 -0.42 0.91 16 41 H 0.06 1.18 6.73 -51.93 -0.35 0.83 16 42 H 0.06 1.30 7.88 -51.93 -0.41 0.89 16 43 H 0.03 0.87 7.23 -51.92 -0.38 0.50 16 44 H 0.03 0.88 7.62 -51.93 -0.40 0.48 16 45 H 0.00 0.02 6.47 -51.93 -0.34 -0.32 16 46 H 0.25 7.18 8.31 -40.82 -0.34 6.84 16 47 H 0.05 1.12 7.72 -51.93 -0.40 0.72 16 48 H 0.07 1.54 8.14 -51.93 -0.42 1.12 16 49 H 0.13 2.06 4.08 -61.97 -0.25 1.81 16 50 H 0.06 0.95 8.14 -51.93 -0.42 0.53 16 LS Contribution 392.50 15.07 5.91 5.91 Total: -1.00 -32.41 392.50 -8.22 -40.63 By element: Atomic # 1 Polarization: 7.36 SS G_CDS: -8.27 Total: -0.91 kcal Atomic # 6 Polarization: 7.65 SS G_CDS: -0.53 Total: 7.12 kcal Atomic # 7 Polarization: -57.55 SS G_CDS: -0.45 Total: -58.00 kcal Atomic # 8 Polarization: -11.90 SS G_CDS: 0.15 Total: -11.75 kcal Atomic # 14 Polarization: 22.03 SS G_CDS: -5.03 Total: 17.00 kcal Total LS contribution 5.91 Total: 5.91 kcal Total: -32.41 -8.22 -40.63 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000985428191.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 50.048 kcal (2) G-P(sol) polarization free energy of solvation -32.414 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 17.634 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.219 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.633 kcal (6) G-S(sol) free energy of system = (1) + (5) 9.416 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.32 seconds