Wall clock time and date at job start Tue Mar 31 2020 20:01:31 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50700 * 1 3 3 N 1.33687 * 126.27437 * 2 1 4 4 C 1.30621 * 108.99630 * 180.12175 * 3 2 1 5 5 C 1.50696 * 125.42304 * 179.87206 * 4 3 2 6 6 C 1.53002 * 109.47344 * 89.69139 * 5 4 3 7 7 C 1.53000 * 109.47233 * 184.99683 * 6 5 4 8 8 C 1.52997 * 109.46817 * 64.99877 * 6 5 4 9 9 O 1.33660 * 109.15320 * 359.60399 * 4 3 2 10 10 C 1.35351 * 107.68501 * 0.24682 * 9 4 3 11 11 C 1.46717 * 126.64384 * 179.97438 * 10 9 4 12 12 O 1.21684 * 120.00227 * 180.02562 * 11 10 9 13 13 N 1.34780 * 120.00006 * 0.02562 * 11 10 9 14 14 C 1.47425 * 125.64836 * 359.69425 * 13 11 10 15 15 C 1.55125 * 104.72199 * 155.81895 * 14 13 11 16 16 C 1.55155 * 101.48847 * 37.29427 * 15 14 13 17 17 H 1.08994 * 110.72166 * 82.69407 * 16 15 14 18 18 N 1.46499 * 110.72386 * 205.97212 * 16 15 14 19 19 C 1.36935 * 119.99761 * 268.52419 * 18 16 15 20 20 H 1.08003 * 120.00310 * 359.97438 * 19 18 16 21 21 C 1.38816 * 120.00026 * 179.97438 * 19 18 16 22 22 N 1.31619 * 120.00186 * 179.97438 * 21 19 18 23 23 Si 1.86810 * 119.99883 * 359.97438 * 21 19 18 24 24 H 1.48502 * 109.47012 * 89.99817 * 23 21 19 25 25 H 1.48496 * 109.46954 * 209.99678 * 23 21 19 26 26 H 1.48499 * 109.46783 * 329.99923 * 23 21 19 27 27 C 1.47019 * 125.64658 * 180.02562 * 13 11 10 28 28 H 1.09002 * 109.88630 * 61.60616 * 27 13 11 29 29 C 1.53003 * 109.88443 * 300.43757 * 27 13 11 30 30 H 1.08998 * 109.46905 * 270.31907 * 1 2 3 31 31 H 1.09005 * 109.47149 * 30.31301 * 1 2 3 32 32 H 1.08999 * 109.47364 * 150.32041 * 1 2 3 33 33 H 1.09008 * 109.47224 * 329.69246 * 5 4 3 34 34 H 1.08997 * 109.47214 * 209.69240 * 5 4 3 35 35 H 1.09002 * 109.47070 * 305.00057 * 6 5 4 36 36 H 1.09004 * 109.46724 * 60.00652 * 7 6 5 37 37 H 1.09001 * 109.47194 * 179.97438 * 7 6 5 38 38 H 1.08992 * 109.47399 * 300.00166 * 7 6 5 39 39 H 1.09002 * 109.47153 * 60.00231 * 8 6 5 40 40 H 1.08998 * 109.47533 * 179.97438 * 8 6 5 41 41 H 1.08996 * 109.47853 * 300.00202 * 8 6 5 42 42 H 1.09004 * 110.36355 * 274.74458 * 14 13 11 43 43 H 1.08999 * 110.36475 * 37.06777 * 14 13 11 44 44 H 1.09000 * 111.18885 * 279.19013 * 15 14 13 45 45 H 1.08994 * 110.93789 * 155.28884 * 15 14 13 46 46 H 0.96997 * 120.00201 * 88.51450 * 18 16 15 47 47 H 0.97003 * 119.99604 * 180.02562 * 22 21 19 48 48 H 1.09008 * 109.46804 * 61.45822 * 29 27 13 49 49 H 1.08996 * 109.47150 * 181.45035 * 29 27 13 50 50 H 1.08996 * 109.46835 * 301.45844 * 29 27 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 7 2.2980 1.0778 0.0000 4 6 3.5452 0.6898 -0.0026 5 6 4.7440 1.6030 -0.0063 6 6 5.1485 1.9195 1.4350 7 6 6.2853 2.9435 1.4325 8 6 5.6181 0.6378 2.1260 9 8 3.5890 -0.6460 0.0043 10 6 2.3136 -1.0992 0.0060 11 6 1.8826 -2.5016 0.0126 12 8 0.6966 -2.7737 0.0129 13 7 2.8004 -3.4887 0.0182 14 6 4.2628 -3.3022 0.0120 15 6 4.8289 -4.6047 0.6360 16 6 3.8622 -5.6707 0.0560 17 1 4.1663 -5.9606 -0.9497 18 7 3.7926 -6.8404 0.9353 19 6 4.6412 -7.8968 0.7379 20 1 5.3617 -7.8679 -0.0662 21 6 4.5756 -9.0050 1.5714 22 7 5.3910 -10.0206 1.3814 23 14 3.3300 -9.0548 2.9627 24 1 2.0646 -9.6583 2.4728 25 1 3.8681 -9.8719 4.0798 26 1 3.0670 -7.6739 3.4413 27 6 2.5089 -4.9297 0.0245 28 1 1.9587 -5.2006 -0.8766 29 6 1.6899 -5.2895 1.2657 30 1 -0.3633 0.0057 1.0276 31 1 -0.3634 0.8872 -0.5187 32 1 -0.3634 -0.8928 -0.5088 33 1 4.4942 2.5286 -0.5251 34 1 5.5728 1.1126 -0.5168 35 1 4.2921 2.3286 1.9712 36 1 5.9506 3.8566 0.9402 37 1 6.5731 3.1693 2.4593 38 1 7.1416 2.5345 0.8964 39 1 6.4744 0.2288 1.5898 40 1 5.9067 0.8633 3.1526 41 1 4.8083 -0.0918 2.1278 42 1 4.6252 -3.1791 -1.0086 43 1 4.5378 -2.4401 0.6198 44 1 4.7726 -4.5771 1.7242 45 1 5.8517 -4.7830 0.3042 46 1 3.1454 -6.8666 1.6573 47 1 5.3448 -10.7950 1.9636 48 1 0.7414 -4.7526 1.2433 49 1 1.4996 -6.3627 1.2769 50 1 2.2449 -5.0094 2.1610 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000987132721.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 20:01:31 Heat of formation + Delta-G solvation = -4.123646 kcal Electronic energy + Delta-G solvation = -30129.821729 eV Core-core repulsion = 26159.022274 eV Total energy + Delta-G solvation = -3970.799454 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 335.200 amu Computer time = 1.02 seconds Orbital eigenvalues (eV) -43.65349 -40.08350 -37.79572 -36.95754 -35.52896 -34.34629 -32.24668 -31.68170 -30.90215 -29.68093 -28.83446 -27.57248 -27.20641 -25.54690 -23.66119 -22.86413 -22.20534 -21.74907 -20.51015 -20.15716 -19.10097 -18.06305 -17.45840 -17.20313 -16.44190 -15.87294 -15.69059 -15.12351 -14.91761 -14.70801 -14.36597 -14.23513 -13.94860 -13.53937 -13.42876 -13.41675 -12.99126 -12.89615 -12.73529 -12.64693 -12.43984 -12.35787 -12.22970 -12.06031 -11.78848 -11.72740 -11.50960 -11.40362 -11.26177 -11.16265 -11.07389 -10.99541 -10.87858 -10.58390 -10.43663 -10.15596 -9.98812 -9.62560 -9.06501 -9.02346 -8.56833 -7.39107 -5.86099 -3.23302 0.66654 2.16130 2.21424 2.94650 3.02696 3.31421 3.34236 3.40268 3.58841 4.30586 4.35016 4.44343 4.50838 4.53680 4.64340 4.85930 4.93868 5.02503 5.07380 5.12682 5.19308 5.26597 5.29096 5.34322 5.37943 5.46667 5.48489 5.50042 5.51417 5.53034 5.60861 5.66214 5.70012 5.76100 5.81830 5.85536 5.87560 5.93036 5.96985 6.10761 6.14996 6.29815 6.43262 6.45811 6.50685 6.75766 7.33268 7.49104 7.88145 7.99004 8.32538 9.09484 9.81705 10.00199 11.31695 Molecular weight = 335.20amu Principal moments of inertia in cm(-1) A = 0.014616 B = 0.003057 C = 0.002700 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1915.260748 B = 9156.553870 C =10366.840093 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.079 4.079 2 C 0.076 3.924 3 N -0.488 5.488 4 C 0.219 3.781 5 C -0.024 4.024 6 C -0.093 4.093 7 C -0.146 4.146 8 C -0.154 4.154 9 O -0.180 6.180 10 C -0.109 4.109 11 C 0.619 3.381 12 O -0.518 6.518 13 N -0.598 5.598 14 C 0.096 3.904 15 C -0.152 4.152 16 C 0.180 3.820 17 H 0.077 0.923 18 N -0.739 5.739 19 C -0.250 4.250 20 H 0.092 0.908 21 C 0.010 3.990 22 N -0.930 5.930 23 Si 0.878 3.122 24 H -0.281 1.281 25 H -0.289 1.289 26 H -0.276 1.276 27 C 0.126 3.874 28 H 0.080 0.920 29 C -0.164 4.164 30 H 0.080 0.920 31 H 0.075 0.925 32 H 0.095 0.905 33 H 0.109 0.891 34 H 0.098 0.902 35 H 0.079 0.921 36 H 0.058 0.942 37 H 0.061 0.939 38 H 0.060 0.940 39 H 0.062 0.938 40 H 0.060 0.940 41 H 0.053 0.947 42 H 0.070 0.930 43 H 0.076 0.924 44 H 0.074 0.926 45 H 0.083 0.917 46 H 0.368 0.632 47 H 0.261 0.739 48 H 0.067 0.933 49 H 0.074 0.926 50 H 0.056 0.944 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.421 26.202 -2.263 26.338 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.136 4.136 2 C -0.048 4.048 3 N -0.218 5.218 4 C 0.013 3.987 5 C -0.062 4.062 6 C -0.113 4.113 7 C -0.203 4.203 8 C -0.211 4.211 9 O -0.066 6.066 10 C -0.164 4.164 11 C 0.406 3.594 12 O -0.397 6.397 13 N -0.330 5.330 14 C -0.026 4.026 15 C -0.193 4.193 16 C 0.069 3.931 17 H 0.095 0.905 18 N -0.383 5.383 19 C -0.380 4.380 20 H 0.110 0.890 21 C -0.186 4.186 22 N -0.577 5.577 23 Si 0.708 3.292 24 H -0.208 1.208 25 H -0.215 1.215 26 H -0.203 1.203 27 C 0.023 3.977 28 H 0.098 0.902 29 C -0.222 4.222 30 H 0.099 0.901 31 H 0.094 0.906 32 H 0.114 0.886 33 H 0.127 0.873 34 H 0.116 0.884 35 H 0.097 0.903 36 H 0.078 0.922 37 H 0.080 0.920 38 H 0.079 0.921 39 H 0.081 0.919 40 H 0.079 0.921 41 H 0.072 0.928 42 H 0.088 0.912 43 H 0.094 0.906 44 H 0.093 0.907 45 H 0.101 0.899 46 H 0.204 0.796 47 H 0.071 0.929 48 H 0.086 0.914 49 H 0.093 0.907 50 H 0.075 0.925 Dipole moment (debyes) X Y Z Total from point charges -2.046 26.463 -2.338 26.644 hybrid contribution -0.432 -0.800 1.087 1.417 sum -2.479 25.663 -1.251 25.812 Atomic orbital electron populations 1.20372 0.85366 1.04278 1.03631 1.22024 0.98275 0.86379 0.98111 1.70325 1.00382 1.31119 1.19949 1.26466 0.95493 0.79742 0.96961 1.20385 0.90280 0.96143 0.99406 1.21158 0.99374 0.96997 0.93742 1.21814 0.97708 0.98276 1.02504 1.21933 1.01659 0.96660 1.00843 1.84594 1.29580 1.23273 1.69201 1.22924 0.81262 0.96109 1.16063 1.15943 0.84971 0.80731 0.77720 1.90833 1.15304 1.81592 1.51927 1.48451 1.07188 1.06535 1.70834 1.22572 0.79054 0.99855 1.01162 1.23576 1.00927 0.93561 1.01263 1.21157 0.89980 0.86661 0.95348 0.90484 1.42953 1.43436 1.16751 1.35195 1.19061 1.12170 0.93335 1.13399 0.88984 1.24650 0.98742 0.96298 0.98957 1.69691 1.39787 1.07459 1.40719 0.86669 0.81993 0.77446 0.83138 1.20780 1.21516 1.20252 1.21978 0.98474 0.77998 0.99274 0.90157 1.22072 1.00401 1.02459 0.97238 0.90137 0.90615 0.88606 0.87316 0.88408 0.90300 0.92248 0.91998 0.92139 0.91929 0.92077 0.92790 0.91223 0.90604 0.90742 0.89887 0.79595 0.92898 0.91441 0.90726 0.92502 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.08 -0.90 9.87 36.01 0.36 -0.54 16 2 C 0.08 1.02 7.16 -82.47 -0.59 0.43 16 3 N -0.49 -6.18 11.26 -7.07 -0.08 -6.26 16 4 C 0.22 2.38 6.74 -12.80 -0.09 2.29 16 5 C -0.02 -0.16 5.32 -27.88 -0.15 -0.31 16 6 C -0.09 -0.61 2.91 -90.62 -0.26 -0.87 16 7 C -0.15 -0.69 9.19 37.16 0.34 -0.34 16 8 C -0.15 -1.16 9.01 37.16 0.33 -0.82 16 9 O -0.18 -2.22 7.46 4.41 0.03 -2.19 16 10 C -0.11 -1.53 6.96 -36.84 -0.26 -1.79 16 11 C 0.62 9.71 7.60 -12.83 -0.10 9.61 16 12 O -0.52 -8.95 13.69 5.20 0.07 -8.88 16 13 N -0.60 -9.10 3.08 -164.39 -0.51 -9.60 16 14 C 0.10 1.29 6.21 -2.41 -0.01 1.27 16 15 C -0.15 -2.37 6.78 -24.47 -0.17 -2.54 16 16 C 0.18 3.25 3.48 -66.09 -0.23 3.02 16 17 H 0.08 1.40 8.09 -51.93 -0.42 0.98 16 18 N -0.74 -16.54 4.74 -51.65 -0.25 -16.78 16 19 C -0.25 -6.71 10.44 -15.06 -0.16 -6.86 16 20 H 0.09 2.62 8.06 -52.48 -0.42 2.20 16 21 C 0.01 0.28 5.50 -17.43 -0.10 0.19 16 22 N -0.93 -28.38 13.97 55.49 0.78 -27.60 16 23 Si 0.88 21.52 27.74 -169.99 -4.71 16.80 16 24 H -0.28 -6.86 7.11 56.52 0.40 -6.46 16 25 H -0.29 -7.20 7.11 56.52 0.40 -6.80 16 26 H -0.28 -6.39 6.52 56.52 0.37 -6.03 16 27 C 0.13 2.09 3.48 -66.95 -0.23 1.85 16 28 H 0.08 1.32 8.14 -51.93 -0.42 0.90 16 29 C -0.16 -2.79 7.93 37.16 0.29 -2.50 16 30 H 0.08 0.85 8.14 -51.93 -0.42 0.42 16 31 H 0.07 0.73 8.14 -51.93 -0.42 0.30 16 32 H 0.10 1.17 6.47 -51.93 -0.34 0.83 16 33 H 0.11 0.60 8.14 -51.92 -0.42 0.18 16 34 H 0.10 0.52 8.14 -51.93 -0.42 0.10 16 35 H 0.08 0.59 8.14 -51.93 -0.42 0.17 16 36 H 0.06 0.24 8.14 -51.93 -0.42 -0.18 16 37 H 0.06 0.29 8.14 -51.93 -0.42 -0.14 16 38 H 0.06 0.25 8.14 -51.93 -0.42 -0.17 16 39 H 0.06 0.43 8.14 -51.93 -0.42 0.01 16 40 H 0.06 0.43 8.14 -51.93 -0.42 0.01 16 41 H 0.05 0.52 6.90 -51.93 -0.36 0.16 16 42 H 0.07 0.84 8.14 -51.93 -0.42 0.42 16 43 H 0.08 0.95 6.23 -51.93 -0.32 0.62 16 44 H 0.07 1.25 8.14 -51.93 -0.42 0.82 16 45 H 0.08 1.25 8.14 -51.93 -0.42 0.82 16 46 H 0.37 8.18 2.92 -40.82 -0.12 8.06 16 47 H 0.26 7.61 8.31 -40.82 -0.34 7.27 16 48 H 0.07 1.14 6.74 -51.92 -0.35 0.79 16 49 H 0.07 1.33 6.82 -51.93 -0.35 0.97 16 50 H 0.06 0.99 8.01 -51.93 -0.42 0.57 16 LS Contribution 393.77 15.07 5.93 5.93 Total: -1.00 -31.72 393.77 -7.93 -39.65 By element: Atomic # 1 Polarization: 15.02 SS G_CDS: -8.19 Total: 6.84 kcal Atomic # 6 Polarization: 3.10 SS G_CDS: -1.01 Total: 2.09 kcal Atomic # 7 Polarization: -60.19 SS G_CDS: -0.06 Total: -60.24 kcal Atomic # 8 Polarization: -11.17 SS G_CDS: 0.10 Total: -11.07 kcal Atomic # 14 Polarization: 21.52 SS G_CDS: -4.71 Total: 16.80 kcal Total LS contribution 5.93 Total: 5.93 kcal Total: -31.72 -7.93 -39.65 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000987132721.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 35.528 kcal (2) G-P(sol) polarization free energy of solvation -31.719 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 3.808 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.932 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.651 kcal (6) G-S(sol) free energy of system = (1) + (5) -4.124 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.03 seconds