Wall clock time and date at job start Tue Mar 31 2020 20:01:30 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50700 * 1 3 3 N 1.33687 * 126.27437 * 2 1 4 4 C 1.30621 * 108.99630 * 180.12175 * 3 2 1 5 5 C 1.50696 * 125.42304 * 179.87206 * 4 3 2 6 6 C 1.53002 * 109.47344 * 89.69139 * 5 4 3 7 7 C 1.53000 * 109.47233 * 184.99683 * 6 5 4 8 8 C 1.52997 * 109.46817 * 64.99877 * 6 5 4 9 9 O 1.33660 * 109.15320 * 359.60399 * 4 3 2 10 10 C 1.35351 * 107.68501 * 0.24682 * 9 4 3 11 11 C 1.46717 * 126.64384 * 179.97438 * 10 9 4 12 12 O 1.21684 * 120.00227 * 180.02562 * 11 10 9 13 13 N 1.34780 * 120.00006 * 0.02562 * 11 10 9 14 14 C 1.47425 * 125.64836 * 359.69425 * 13 11 10 15 15 C 1.55125 * 104.72199 * 155.81895 * 14 13 11 16 16 C 1.55155 * 101.48847 * 37.29427 * 15 14 13 17 17 H 1.08994 * 110.72166 * 82.69407 * 16 15 14 18 18 N 1.46499 * 110.72386 * 205.97212 * 16 15 14 19 19 C 1.36935 * 119.99761 * 268.52419 * 18 16 15 20 20 H 1.08003 * 120.00310 * 359.97438 * 19 18 16 21 21 C 1.38816 * 120.00026 * 179.97438 * 19 18 16 22 22 N 1.31619 * 120.00186 * 179.97438 * 21 19 18 23 23 Si 1.86810 * 119.99883 * 359.97438 * 21 19 18 24 24 H 1.48502 * 109.47012 * 89.99817 * 23 21 19 25 25 H 1.48496 * 109.46954 * 209.99678 * 23 21 19 26 26 H 1.48499 * 109.46783 * 329.99923 * 23 21 19 27 27 C 1.47019 * 125.64658 * 180.02562 * 13 11 10 28 28 H 1.09002 * 109.88630 * 61.60616 * 27 13 11 29 29 C 1.53003 * 109.88443 * 300.43757 * 27 13 11 30 30 H 1.08998 * 109.46905 * 270.31907 * 1 2 3 31 31 H 1.09005 * 109.47149 * 30.31301 * 1 2 3 32 32 H 1.08999 * 109.47364 * 150.32041 * 1 2 3 33 33 H 1.09008 * 109.47224 * 329.69246 * 5 4 3 34 34 H 1.08997 * 109.47214 * 209.69240 * 5 4 3 35 35 H 1.09002 * 109.47070 * 305.00057 * 6 5 4 36 36 H 1.09004 * 109.46724 * 60.00652 * 7 6 5 37 37 H 1.09001 * 109.47194 * 179.97438 * 7 6 5 38 38 H 1.08992 * 109.47399 * 300.00166 * 7 6 5 39 39 H 1.09002 * 109.47153 * 60.00231 * 8 6 5 40 40 H 1.08998 * 109.47533 * 179.97438 * 8 6 5 41 41 H 1.08996 * 109.47853 * 300.00202 * 8 6 5 42 42 H 1.09004 * 110.36355 * 274.74458 * 14 13 11 43 43 H 1.08999 * 110.36475 * 37.06777 * 14 13 11 44 44 H 1.09000 * 111.18885 * 279.19013 * 15 14 13 45 45 H 1.08994 * 110.93789 * 155.28884 * 15 14 13 46 46 H 0.96997 * 120.00201 * 88.51450 * 18 16 15 47 47 H 0.97003 * 119.99604 * 180.02562 * 22 21 19 48 48 H 1.09008 * 109.46804 * 61.45822 * 29 27 13 49 49 H 1.08996 * 109.47150 * 181.45035 * 29 27 13 50 50 H 1.08996 * 109.46835 * 301.45844 * 29 27 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 7 2.2980 1.0778 0.0000 4 6 3.5452 0.6898 -0.0026 5 6 4.7440 1.6030 -0.0063 6 6 5.1485 1.9195 1.4350 7 6 6.2853 2.9435 1.4325 8 6 5.6181 0.6378 2.1260 9 8 3.5890 -0.6460 0.0043 10 6 2.3136 -1.0992 0.0060 11 6 1.8826 -2.5016 0.0126 12 8 0.6966 -2.7737 0.0129 13 7 2.8004 -3.4887 0.0182 14 6 4.2628 -3.3022 0.0120 15 6 4.8289 -4.6047 0.6360 16 6 3.8622 -5.6707 0.0560 17 1 4.1663 -5.9606 -0.9497 18 7 3.7926 -6.8404 0.9353 19 6 4.6412 -7.8968 0.7379 20 1 5.3617 -7.8679 -0.0662 21 6 4.5756 -9.0050 1.5714 22 7 5.3910 -10.0206 1.3814 23 14 3.3300 -9.0548 2.9627 24 1 2.0646 -9.6583 2.4728 25 1 3.8681 -9.8719 4.0798 26 1 3.0670 -7.6739 3.4413 27 6 2.5089 -4.9297 0.0245 28 1 1.9587 -5.2006 -0.8766 29 6 1.6899 -5.2895 1.2657 30 1 -0.3633 0.0057 1.0276 31 1 -0.3634 0.8872 -0.5187 32 1 -0.3634 -0.8928 -0.5088 33 1 4.4942 2.5286 -0.5251 34 1 5.5728 1.1126 -0.5168 35 1 4.2921 2.3286 1.9712 36 1 5.9506 3.8566 0.9402 37 1 6.5731 3.1693 2.4593 38 1 7.1416 2.5345 0.8964 39 1 6.4744 0.2288 1.5898 40 1 5.9067 0.8633 3.1526 41 1 4.8083 -0.0918 2.1278 42 1 4.6252 -3.1791 -1.0086 43 1 4.5378 -2.4401 0.6198 44 1 4.7726 -4.5771 1.7242 45 1 5.8517 -4.7830 0.3042 46 1 3.1454 -6.8666 1.6573 47 1 5.3448 -10.7950 1.9636 48 1 0.7414 -4.7526 1.2433 49 1 1.4996 -6.3627 1.2769 50 1 2.2449 -5.0094 2.1610 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000987132721.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 20:01:30 Heat of formation + Delta-G solvation = -24.771161 kcal Electronic energy + Delta-G solvation = -30130.717072 eV Core-core repulsion = 26159.022274 eV Total energy + Delta-G solvation = -3971.694798 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 335.200 amu Computer time = 1.10 seconds Orbital eigenvalues (eV) -44.59144 -41.34956 -39.11385 -37.51401 -36.57838 -35.96146 -33.77659 -32.94069 -32.19428 -31.26835 -29.56931 -28.26240 -27.99140 -26.99998 -25.23127 -24.26071 -23.10258 -22.83123 -21.37873 -21.05354 -20.51270 -19.91820 -18.70777 -18.17104 -17.33278 -17.12822 -16.97880 -16.34437 -16.10437 -15.67448 -15.57240 -15.48769 -14.94893 -14.86020 -14.66814 -14.38271 -14.29385 -14.04304 -13.77352 -13.61173 -13.51057 -13.23375 -13.17541 -13.16214 -13.09285 -12.94464 -12.82888 -12.67097 -12.40937 -12.19250 -12.03853 -11.96270 -11.90993 -11.82899 -11.76367 -11.64544 -11.61830 -11.18979 -10.99921 -10.12417 -9.71429 -9.35045 -8.03340 -5.37279 -0.33385 1.19096 1.26280 1.36313 1.38008 1.44521 1.81842 1.88705 2.46077 2.76641 3.23229 3.34732 3.47349 3.58335 3.64071 3.80097 3.82822 3.93065 4.02846 4.04840 4.23554 4.26831 4.31114 4.32617 4.40372 4.52591 4.54300 4.63812 4.65387 4.68666 4.72665 4.74553 4.82432 4.85971 4.91565 4.95026 4.99798 5.07861 5.08478 5.15018 5.16220 5.21759 5.28690 5.36679 5.38982 5.46228 5.76721 6.19906 6.21862 6.47010 6.79093 7.05200 7.79605 7.98086 9.17658 Molecular weight = 335.20amu Principal moments of inertia in cm(-1) A = 0.014616 B = 0.003057 C = 0.002700 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1915.260748 B = 9156.553870 C =10366.840093 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.078 4.078 2 C 0.077 3.923 3 N -0.508 5.508 4 C 0.235 3.765 5 C -0.026 4.026 6 C -0.088 4.088 7 C -0.141 4.141 8 C -0.154 4.154 9 O -0.181 6.181 10 C -0.134 4.134 11 C 0.619 3.381 12 O -0.541 6.541 13 N -0.600 5.600 14 C 0.107 3.893 15 C -0.143 4.143 16 C 0.172 3.828 17 H 0.076 0.924 18 N -0.743 5.743 19 C -0.227 4.227 20 H 0.067 0.933 21 C -0.057 4.057 22 N -0.980 5.980 23 Si 0.938 3.062 24 H -0.278 1.278 25 H -0.295 1.295 26 H -0.255 1.255 27 C 0.133 3.867 28 H 0.081 0.919 29 C -0.158 4.158 30 H 0.087 0.913 31 H 0.092 0.908 32 H 0.085 0.915 33 H 0.127 0.873 34 H 0.119 0.881 35 H 0.066 0.934 36 H 0.068 0.932 37 H 0.061 0.939 38 H 0.069 0.931 39 H 0.071 0.929 40 H 0.062 0.938 41 H 0.029 0.971 42 H 0.088 0.912 43 H 0.089 0.911 44 H 0.064 0.936 45 H 0.090 0.910 46 H 0.370 0.630 47 H 0.258 0.742 48 H 0.068 0.932 49 H 0.066 0.934 50 H 0.052 0.948 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.278 29.193 -2.239 29.307 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.135 4.135 2 C -0.047 4.047 3 N -0.237 5.237 4 C 0.030 3.970 5 C -0.063 4.063 6 C -0.107 4.107 7 C -0.199 4.199 8 C -0.212 4.212 9 O -0.068 6.068 10 C -0.189 4.189 11 C 0.408 3.592 12 O -0.421 6.421 13 N -0.332 5.332 14 C -0.016 4.016 15 C -0.183 4.183 16 C 0.062 3.938 17 H 0.094 0.906 18 N -0.388 5.388 19 C -0.358 4.358 20 H 0.085 0.915 21 C -0.248 4.248 22 N -0.630 5.630 23 Si 0.766 3.234 24 H -0.204 1.204 25 H -0.222 1.222 26 H -0.180 1.180 27 C 0.029 3.971 28 H 0.099 0.901 29 C -0.216 4.216 30 H 0.105 0.895 31 H 0.111 0.889 32 H 0.103 0.897 33 H 0.145 0.855 34 H 0.137 0.863 35 H 0.085 0.915 36 H 0.087 0.913 37 H 0.080 0.920 38 H 0.088 0.912 39 H 0.090 0.910 40 H 0.081 0.919 41 H 0.049 0.951 42 H 0.107 0.893 43 H 0.107 0.893 44 H 0.083 0.917 45 H 0.108 0.892 46 H 0.206 0.794 47 H 0.067 0.933 48 H 0.087 0.913 49 H 0.085 0.915 50 H 0.071 0.929 Dipole moment (debyes) X Y Z Total from point charges -1.915 29.530 -2.330 29.684 hybrid contribution -0.417 -1.572 0.998 1.908 sum -2.331 27.958 -1.332 28.087 Atomic orbital electron populations 1.20400 0.84421 1.04527 1.04114 1.22378 0.99151 0.86466 0.96750 1.70386 1.01090 1.30910 1.21357 1.27396 0.96220 0.79510 0.93903 1.20731 0.89331 0.96212 1.00049 1.21107 0.99628 0.96884 0.93099 1.21784 0.97152 0.98036 1.02891 1.21948 1.01110 0.96655 1.01439 1.84573 1.28749 1.24003 1.69514 1.22578 0.82154 0.95409 1.18750 1.16088 0.84679 0.81329 0.77136 1.90813 1.16162 1.82171 1.52944 1.48428 1.07939 1.05782 1.71003 1.22586 0.77772 0.98897 1.02298 1.23397 1.00673 0.93651 1.00628 1.21336 0.91745 0.86043 0.94677 0.90596 1.42928 1.42790 1.17048 1.36037 1.19039 1.11136 0.94052 1.11549 0.91518 1.25358 1.01157 0.96310 1.02020 1.69851 1.42353 1.08417 1.42367 0.85669 0.79499 0.78303 0.79905 1.20437 1.22212 1.17996 1.21757 0.97270 0.78915 0.99155 0.90088 1.21993 1.00471 1.01858 0.97248 0.89468 0.88946 0.89671 0.85469 0.86262 0.91538 0.91261 0.91961 0.91201 0.91010 0.91866 0.95139 0.89336 0.89280 0.91719 0.89190 0.79376 0.93332 0.91331 0.91525 0.92876 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.08 -1.67 9.87 71.24 0.70 -0.97 16 2 C 0.08 1.96 7.16 41.83 0.30 2.26 16 3 N -0.51 -11.92 11.26 -291.07 -3.28 -15.20 16 4 C 0.23 4.57 6.74 88.29 0.59 5.16 16 5 C -0.03 -0.27 5.32 29.85 0.16 -0.11 16 6 C -0.09 -0.91 2.91 -10.79 -0.03 -0.94 16 7 C -0.14 -0.89 9.19 71.98 0.66 -0.23 16 8 C -0.15 -2.01 9.01 71.98 0.65 -1.37 16 9 O -0.18 -4.11 7.46 -7.13 -0.05 -4.16 16 10 C -0.13 -3.62 6.96 24.04 0.17 -3.45 16 11 C 0.62 18.81 7.60 86.46 0.66 19.47 16 12 O -0.54 -18.42 13.69 -4.30 -0.06 -18.48 16 13 N -0.60 -17.42 3.08 -792.22 -2.44 -19.86 16 14 C 0.11 2.62 6.21 86.93 0.54 3.16 16 15 C -0.14 -4.23 6.78 32.06 0.22 -4.02 16 16 C 0.17 6.04 3.48 46.18 0.16 6.20 16 17 H 0.08 2.70 8.09 -2.39 -0.02 2.68 16 18 N -0.74 -32.79 4.74 -317.32 -1.51 -34.30 16 19 C -0.23 -12.26 10.44 84.03 0.88 -11.39 16 20 H 0.07 3.89 8.06 -2.91 -0.02 3.87 16 21 C -0.06 -3.24 5.50 84.86 0.47 -2.77 16 22 N -0.98 -61.26 13.97 21.65 0.30 -60.95 16 23 Si 0.94 44.59 27.74 68.60 1.90 46.49 16 24 H -0.28 -12.98 7.11 99.48 0.71 -12.27 16 25 H -0.30 -14.27 7.11 99.48 0.71 -13.57 16 26 H -0.26 -11.06 6.52 99.48 0.65 -10.41 16 27 C 0.13 4.26 3.48 45.35 0.16 4.42 16 28 H 0.08 2.60 8.14 -2.39 -0.02 2.58 16 29 C -0.16 -5.23 7.93 71.98 0.57 -4.66 16 30 H 0.09 1.75 8.14 -2.39 -0.02 1.73 16 31 H 0.09 1.63 8.14 -2.38 -0.02 1.61 16 32 H 0.08 2.03 6.47 -2.39 -0.02 2.02 16 33 H 0.13 0.93 8.14 -2.38 -0.02 0.91 16 34 H 0.12 0.79 8.14 -2.39 -0.02 0.78 16 35 H 0.07 0.87 8.14 -2.39 -0.02 0.85 16 36 H 0.07 0.32 8.14 -2.39 -0.02 0.30 16 37 H 0.06 0.41 8.14 -2.39 -0.02 0.39 16 38 H 0.07 0.34 8.14 -2.39 -0.02 0.32 16 39 H 0.07 0.79 8.14 -2.39 -0.02 0.78 16 40 H 0.06 0.78 8.14 -2.39 -0.02 0.76 16 41 H 0.03 0.54 6.90 -2.39 -0.02 0.52 16 42 H 0.09 1.89 8.14 -2.39 -0.02 1.87 16 43 H 0.09 2.01 6.23 -2.39 -0.01 2.00 16 44 H 0.06 2.07 8.14 -2.39 -0.02 2.05 16 45 H 0.09 2.55 8.14 -2.39 -0.02 2.53 16 46 H 0.37 16.02 2.92 -92.71 -0.27 15.75 16 47 H 0.26 15.45 8.31 -92.71 -0.77 14.68 16 48 H 0.07 2.26 6.74 -2.38 -0.02 2.24 16 49 H 0.07 2.30 6.82 -2.39 -0.02 2.29 16 50 H 0.05 1.78 8.01 -2.39 -0.02 1.76 16 Total: -1.00 -69.00 393.77 2.33 -66.67 By element: Atomic # 1 Polarization: 28.41 SS G_CDS: 0.61 Total: 29.02 kcal Atomic # 6 Polarization: 3.92 SS G_CDS: 6.85 Total: 10.77 kcal Atomic # 7 Polarization: -123.39 SS G_CDS: -6.92 Total: -130.31 kcal Atomic # 8 Polarization: -22.53 SS G_CDS: -0.11 Total: -22.64 kcal Atomic # 14 Polarization: 44.59 SS G_CDS: 1.90 Total: 46.49 kcal Total: -69.00 2.33 -66.67 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000987132721.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 41.903 kcal (2) G-P(sol) polarization free energy of solvation -69.004 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -27.101 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.330 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -66.674 kcal (6) G-S(sol) free energy of system = (1) + (5) -24.771 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.10 seconds