Wall clock time and date at job start Tue Mar 31 2020 20:01:40 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50706 * 1 3 3 N 1.33692 * 126.27090 * 2 1 4 4 C 1.30624 * 108.99075 * 180.27006 * 3 2 1 5 5 C 1.50701 * 125.41952 * 179.70850 * 4 3 2 6 6 C 1.53003 * 109.47047 * 90.03065 * 5 4 3 7 7 C 1.52997 * 109.47405 * 174.99703 * 6 5 4 8 8 C 1.53000 * 109.46815 * 295.00017 * 6 5 4 9 9 O 1.33664 * 109.15577 * 359.73925 * 4 3 2 10 10 C 1.35344 * 107.68376 * 359.97438 * 9 4 3 11 11 C 1.46716 * 126.64213 * 180.02562 * 10 9 4 12 12 O 1.21684 * 120.00210 * 180.02562 * 11 10 9 13 13 N 1.34776 * 120.00389 * 0.02562 * 11 10 9 14 14 C 1.47431 * 125.64520 * 359.97438 * 13 11 10 15 15 C 1.54905 * 104.83370 * 155.90626 * 14 13 11 16 16 C 1.55158 * 101.58276 * 37.00452 * 15 14 13 17 17 H 1.08997 * 110.71706 * 83.04377 * 16 15 14 18 18 N 1.46500 * 110.71819 * 206.13831 * 16 15 14 19 19 C 1.36943 * 119.99878 * 271.15464 * 18 16 15 20 20 H 1.07996 * 119.99698 * 0.02562 * 19 18 16 21 21 C 1.38809 * 119.99902 * 179.97438 * 19 18 16 22 22 N 1.31620 * 120.00319 * 0.02562 * 21 19 18 23 23 Si 1.86798 * 120.00011 * 180.02562 * 21 19 18 24 24 H 1.48506 * 109.47297 * 59.99967 * 23 21 19 25 25 H 1.48503 * 109.47261 * 300.00148 * 23 21 19 26 26 H 1.48500 * 109.47454 * 180.02562 * 23 21 19 27 27 C 1.47316 * 125.61784 * 180.19853 * 13 11 10 28 28 H 1.08999 * 109.85035 * 300.41770 * 27 13 11 29 29 C 1.52996 * 110.06566 * 61.68484 * 27 13 11 30 30 H 1.08995 * 109.46954 * 270.18345 * 1 2 3 31 31 H 1.09002 * 109.47183 * 30.18528 * 1 2 3 32 32 H 1.08998 * 109.46762 * 150.18579 * 1 2 3 33 33 H 1.08997 * 109.47369 * 210.02703 * 5 4 3 34 34 H 1.08997 * 109.47602 * 330.03217 * 5 4 3 35 35 H 1.09007 * 109.46836 * 54.99629 * 6 5 4 36 36 H 1.09006 * 109.46661 * 60.00137 * 7 6 5 37 37 H 1.08995 * 109.47310 * 179.97438 * 7 6 5 38 38 H 1.09001 * 109.47089 * 300.00110 * 7 6 5 39 39 H 1.08997 * 109.46988 * 299.99461 * 8 6 5 40 40 H 1.09002 * 109.47600 * 59.99935 * 8 6 5 41 41 H 1.09006 * 109.46863 * 179.97438 * 8 6 5 42 42 H 1.08995 * 110.36682 * 37.05906 * 14 13 11 43 43 H 1.09002 * 110.36427 * 274.74024 * 14 13 11 44 44 H 1.09001 * 111.00159 * 278.92851 * 15 14 13 45 45 H 1.08997 * 111.03976 * 155.09702 * 15 14 13 46 46 H 0.97000 * 120.00415 * 91.15412 * 18 16 15 47 47 H 0.97001 * 119.99542 * 359.97438 * 22 21 19 48 48 H 1.08993 * 109.47534 * 177.73289 * 29 27 13 49 49 H 1.09004 * 109.47109 * 297.73348 * 29 27 13 50 50 H 1.09000 * 109.47131 * 57.72819 * 29 27 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5071 0.0000 0.0000 3 7 2.2980 1.0779 0.0000 4 6 3.5453 0.6899 -0.0058 5 6 4.7440 1.6031 -0.0141 6 6 5.1578 1.9145 1.4256 7 6 6.4469 2.7385 1.4189 8 6 4.0474 2.7103 2.1146 9 8 3.5890 -0.6461 -0.0040 10 6 2.3137 -1.0992 0.0039 11 6 1.8828 -2.5016 0.0090 12 8 0.6967 -2.7737 0.0156 13 7 2.8004 -3.4887 0.0065 14 6 4.2629 -3.3022 -0.0018 15 6 4.8325 -4.6065 0.6097 16 6 3.8625 -5.6708 0.0321 17 1 4.1627 -5.9601 -0.9750 18 7 3.7978 -6.8430 0.9085 19 6 4.6810 -7.8755 0.7372 20 1 5.4254 -7.8254 -0.0436 21 6 4.6201 -8.9859 1.5679 22 7 3.7132 -9.0467 2.5199 23 14 5.8253 -10.3940 1.3348 24 1 7.2123 -9.8922 1.5077 25 1 5.6695 -10.9580 -0.0301 26 1 5.5519 -11.4514 2.3409 27 6 2.5075 -4.9324 0.0069 28 1 1.9274 -5.1922 0.8924 29 6 1.7320 -5.3110 -1.2564 30 1 -0.3633 0.0033 1.0276 31 1 -0.3634 0.8883 -0.5167 32 1 -0.3633 -0.8917 -0.5109 33 1 5.5695 1.1145 -0.5317 34 1 4.4909 2.5304 -0.5280 35 1 5.3252 0.9823 1.9653 36 1 6.2795 3.6707 0.8793 37 1 6.7415 2.9607 2.4445 38 1 7.2380 2.1715 0.9281 39 1 3.8800 3.6424 1.5750 40 1 3.1289 2.1233 2.1194 41 1 4.3420 2.9318 3.1404 42 1 4.5393 -2.4438 0.6105 43 1 4.6230 -3.1729 -1.0224 44 1 4.7824 -4.5820 1.6983 45 1 5.8534 -4.7839 0.2716 46 1 3.1295 -6.8879 1.6101 47 1 3.0877 -8.3154 2.6412 48 1 1.5556 -6.3866 -1.2659 49 1 0.7768 -4.7861 -1.2674 50 1 2.3110 -5.0300 -2.1361 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000987132724.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 20:01:40 Heat of formation + Delta-G solvation = -13.880372 kcal Electronic energy + Delta-G solvation = -29802.317724 eV Core-core repulsion = 25831.095186 eV Total energy + Delta-G solvation = -3971.222538 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 335.200 amu Computer time = 1.05 seconds Orbital eigenvalues (eV) -43.63841 -39.98799 -37.68147 -36.98098 -35.47786 -34.42808 -32.26067 -31.56901 -31.01680 -29.21116 -28.84793 -27.51508 -27.15071 -25.12214 -23.38946 -23.11943 -22.12163 -21.70508 -20.55760 -20.33088 -19.54221 -17.60666 -17.27345 -17.17903 -16.33292 -16.04896 -15.67896 -15.23970 -14.91862 -14.47692 -14.43299 -14.10673 -13.70676 -13.55006 -13.41524 -13.35952 -13.25677 -12.94815 -12.85703 -12.69082 -12.46700 -12.31126 -12.19689 -12.09634 -11.70019 -11.62152 -11.42514 -11.33280 -11.19489 -11.03278 -11.01597 -10.91916 -10.66648 -10.60723 -10.30545 -10.06817 -9.99421 -9.26308 -9.04955 -8.98774 -8.54127 -7.15818 -6.18358 -3.20636 0.68198 2.17876 2.22401 2.96202 3.05134 3.47589 3.50594 3.59897 3.68436 4.31378 4.37734 4.44554 4.56886 4.59630 4.64294 4.89135 5.00636 5.03905 5.09717 5.18960 5.23072 5.27065 5.32888 5.37350 5.38662 5.48216 5.51705 5.53164 5.55491 5.59007 5.64565 5.69486 5.72009 5.80835 5.81735 5.87520 5.92438 5.94536 5.98208 6.15897 6.17338 6.29275 6.44930 6.46778 6.52701 6.76872 7.35047 7.51478 7.71625 8.01032 8.66463 9.10318 9.96981 10.10364 11.29375 Molecular weight = 335.20amu Principal moments of inertia in cm(-1) A = 0.014536 B = 0.002768 C = 0.002441 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1925.787125 B =10111.593538 C =11469.673319 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.079 4.079 2 C 0.076 3.924 3 N -0.484 5.484 4 C 0.217 3.783 5 C -0.024 4.024 6 C -0.095 4.095 7 C -0.146 4.146 8 C -0.150 4.150 9 O -0.182 6.182 10 C -0.108 4.108 11 C 0.618 3.382 12 O -0.518 6.518 13 N -0.598 5.598 14 C 0.098 3.902 15 C -0.154 4.154 16 C 0.182 3.818 17 H 0.069 0.931 18 N -0.725 5.725 19 C -0.336 4.336 20 H 0.067 0.933 21 C -0.041 4.041 22 N -0.940 5.940 23 Si 1.080 2.920 24 H -0.295 1.295 25 H -0.294 1.294 26 H -0.285 1.285 27 C 0.127 3.873 28 H 0.079 0.921 29 C -0.155 4.155 30 H 0.080 0.920 31 H 0.075 0.925 32 H 0.095 0.905 33 H 0.097 0.903 34 H 0.109 0.891 35 H 0.076 0.924 36 H 0.059 0.941 37 H 0.061 0.939 38 H 0.059 0.941 39 H 0.059 0.941 40 H 0.059 0.941 41 H 0.056 0.944 42 H 0.075 0.925 43 H 0.067 0.933 44 H 0.074 0.926 45 H 0.079 0.921 46 H 0.369 0.631 47 H 0.256 0.744 48 H 0.072 0.928 49 H 0.063 0.937 50 H 0.052 0.948 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.136 24.304 -5.836 25.086 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.136 4.136 2 C -0.048 4.048 3 N -0.214 5.214 4 C 0.011 3.989 5 C -0.062 4.062 6 C -0.114 4.114 7 C -0.203 4.203 8 C -0.207 4.207 9 O -0.069 6.069 10 C -0.163 4.163 11 C 0.405 3.595 12 O -0.396 6.396 13 N -0.330 5.330 14 C -0.024 4.024 15 C -0.195 4.195 16 C 0.070 3.930 17 H 0.087 0.913 18 N -0.367 5.367 19 C -0.467 4.467 20 H 0.085 0.915 21 C -0.239 4.239 22 N -0.584 5.584 23 Si 0.911 3.089 24 H -0.222 1.222 25 H -0.222 1.222 26 H -0.210 1.210 27 C 0.024 3.976 28 H 0.097 0.903 29 C -0.213 4.213 30 H 0.099 0.901 31 H 0.094 0.906 32 H 0.113 0.887 33 H 0.115 0.885 34 H 0.127 0.873 35 H 0.095 0.905 36 H 0.078 0.922 37 H 0.080 0.920 38 H 0.078 0.922 39 H 0.078 0.922 40 H 0.078 0.922 41 H 0.075 0.925 42 H 0.093 0.907 43 H 0.085 0.915 44 H 0.092 0.908 45 H 0.097 0.903 46 H 0.203 0.797 47 H 0.067 0.933 48 H 0.091 0.909 49 H 0.082 0.918 50 H 0.071 0.929 Dipole moment (debyes) X Y Z Total from point charges 1.955 23.228 -5.418 23.931 hybrid contribution -0.241 0.941 -0.371 1.039 sum 1.714 24.169 -5.789 24.911 Atomic orbital electron populations 1.20368 0.85346 1.04234 1.03660 1.22036 0.98283 0.86389 0.98135 1.70346 1.00298 1.30959 1.19749 1.26481 0.95598 0.79666 0.97133 1.20372 0.90192 0.96175 0.99415 1.21145 0.96282 1.00166 0.93792 1.21818 0.96089 0.99890 1.02505 1.21887 0.98260 1.00356 1.00191 1.84575 1.29714 1.23307 1.69262 1.22931 0.81187 0.96136 1.16007 1.15955 0.84999 0.80746 0.77769 1.90837 1.15280 1.81587 1.51946 1.48512 1.07122 1.06614 1.70771 1.22501 0.79132 0.99817 1.00999 1.23562 1.00771 0.93783 1.01396 1.21184 0.89786 0.86863 0.95121 0.91317 1.42353 1.39865 1.17313 1.37150 1.19998 1.11714 0.98215 1.16763 0.91536 1.25808 1.02391 1.00169 0.95531 1.70889 1.19738 1.34566 1.33210 0.83241 0.74426 0.75720 0.75533 1.22188 1.22167 1.20997 1.22072 0.98545 0.77693 0.99275 0.90270 1.22047 1.00399 1.02435 0.96378 0.90109 0.90611 0.88655 0.88453 0.87323 0.90543 0.92227 0.91987 0.92202 0.92179 0.92183 0.92529 0.90671 0.91484 0.90754 0.90259 0.79714 0.93282 0.90862 0.91786 0.92888 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.08 -0.92 9.87 36.01 0.36 -0.56 16 2 C 0.08 1.04 7.16 -82.46 -0.59 0.45 16 3 N -0.48 -6.15 10.53 -7.07 -0.07 -6.23 16 4 C 0.22 2.43 6.79 -12.79 -0.09 2.34 16 5 C -0.02 -0.17 5.32 -27.88 -0.15 -0.32 16 6 C -0.09 -0.64 2.91 -90.62 -0.26 -0.91 16 7 C -0.15 -0.73 9.19 37.16 0.34 -0.39 16 8 C -0.15 -1.14 9.00 37.16 0.33 -0.81 16 9 O -0.18 -2.36 8.07 4.42 0.04 -2.33 16 10 C -0.11 -1.58 6.96 -36.84 -0.26 -1.84 16 11 C 0.62 10.20 7.62 -12.84 -0.10 10.10 16 12 O -0.52 -9.39 13.87 5.20 0.07 -9.32 16 13 N -0.60 -9.67 3.08 -164.31 -0.51 -10.18 16 14 C 0.10 1.41 6.19 -2.53 -0.02 1.39 16 15 C -0.15 -2.57 6.77 -24.58 -0.17 -2.73 16 16 C 0.18 3.49 3.12 -66.09 -0.21 3.28 16 17 H 0.07 1.33 7.81 -51.93 -0.41 0.93 16 18 N -0.73 -17.40 5.24 -51.65 -0.27 -17.67 16 19 C -0.34 -9.05 9.97 -15.06 -0.15 -9.20 16 20 H 0.07 1.75 7.83 -52.49 -0.41 1.34 16 21 C -0.04 -1.15 5.50 -17.43 -0.10 -1.25 16 22 N -0.94 -28.47 13.70 55.49 0.76 -27.71 16 23 Si 1.08 25.20 29.92 -169.99 -5.09 20.12 16 24 H -0.29 -6.54 7.11 56.52 0.40 -6.14 16 25 H -0.29 -6.56 7.11 56.52 0.40 -6.16 16 26 H -0.28 -6.80 7.11 56.52 0.40 -6.39 16 27 C 0.13 2.24 3.22 -66.79 -0.21 2.03 16 28 H 0.08 1.54 7.70 -51.93 -0.40 1.14 16 29 C -0.15 -2.54 9.11 37.16 0.34 -2.20 16 30 H 0.08 0.88 8.14 -51.93 -0.42 0.46 16 31 H 0.08 0.75 8.14 -51.93 -0.42 0.32 16 32 H 0.09 1.20 6.48 -51.93 -0.34 0.87 16 33 H 0.10 0.53 8.14 -51.93 -0.42 0.11 16 34 H 0.11 0.64 8.14 -51.93 -0.42 0.22 16 35 H 0.08 0.60 8.14 -51.93 -0.42 0.18 16 36 H 0.06 0.26 8.14 -51.93 -0.42 -0.17 16 37 H 0.06 0.31 8.14 -51.93 -0.42 -0.12 16 38 H 0.06 0.27 8.14 -51.93 -0.42 -0.15 16 39 H 0.06 0.41 8.14 -51.93 -0.42 -0.01 16 40 H 0.06 0.59 6.82 -51.93 -0.35 0.24 16 41 H 0.06 0.39 8.14 -51.93 -0.42 -0.03 16 42 H 0.08 1.01 6.25 -51.93 -0.32 0.68 16 43 H 0.07 0.87 8.14 -51.93 -0.42 0.45 16 44 H 0.07 1.35 8.14 -51.93 -0.42 0.93 16 45 H 0.08 1.26 8.14 -51.93 -0.42 0.84 16 46 H 0.37 9.28 6.37 -40.82 -0.26 9.02 16 47 H 0.26 7.65 6.77 -40.82 -0.28 7.38 16 48 H 0.07 1.24 8.14 -51.93 -0.42 0.82 16 49 H 0.06 1.07 6.93 -51.93 -0.36 0.71 16 50 H 0.05 0.81 8.14 -51.93 -0.42 0.38 16 LS Contribution 399.49 15.07 6.02 6.02 Total: -1.00 -31.84 399.49 -8.24 -40.07 By element: Atomic # 1 Polarization: 16.09 SS G_CDS: -8.26 Total: 7.83 kcal Atomic # 6 Polarization: 0.32 SS G_CDS: -0.92 Total: -0.61 kcal Atomic # 7 Polarization: -61.69 SS G_CDS: -0.09 Total: -61.78 kcal Atomic # 8 Polarization: -11.75 SS G_CDS: 0.11 Total: -11.64 kcal Atomic # 14 Polarization: 25.20 SS G_CDS: -5.09 Total: 20.12 kcal Total LS contribution 6.02 Total: 6.02 kcal Total: -31.84 -8.24 -40.07 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000987132724.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 26.191 kcal (2) G-P(sol) polarization free energy of solvation -31.836 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -5.645 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.235 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.071 kcal (6) G-S(sol) free energy of system = (1) + (5) -13.880 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.06 seconds