Wall clock time and date at job start Tue Mar 31 2020 20:01:38 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50706 * 1 3 3 N 1.33692 * 126.27090 * 2 1 4 4 C 1.30624 * 108.99075 * 180.27006 * 3 2 1 5 5 C 1.50701 * 125.41952 * 179.70850 * 4 3 2 6 6 C 1.53003 * 109.47047 * 90.03065 * 5 4 3 7 7 C 1.52997 * 109.47405 * 174.99703 * 6 5 4 8 8 C 1.53000 * 109.46815 * 295.00017 * 6 5 4 9 9 O 1.33664 * 109.15577 * 359.73925 * 4 3 2 10 10 C 1.35344 * 107.68376 * 359.97438 * 9 4 3 11 11 C 1.46716 * 126.64213 * 180.02562 * 10 9 4 12 12 O 1.21684 * 120.00210 * 180.02562 * 11 10 9 13 13 N 1.34776 * 120.00389 * 0.02562 * 11 10 9 14 14 C 1.47431 * 125.64520 * 359.97438 * 13 11 10 15 15 C 1.54905 * 104.83370 * 155.90626 * 14 13 11 16 16 C 1.55158 * 101.58276 * 37.00452 * 15 14 13 17 17 H 1.08997 * 110.71706 * 83.04377 * 16 15 14 18 18 N 1.46500 * 110.71819 * 206.13831 * 16 15 14 19 19 C 1.36943 * 119.99878 * 271.15464 * 18 16 15 20 20 H 1.07996 * 119.99698 * 0.02562 * 19 18 16 21 21 C 1.38809 * 119.99902 * 179.97438 * 19 18 16 22 22 N 1.31620 * 120.00319 * 0.02562 * 21 19 18 23 23 Si 1.86798 * 120.00011 * 180.02562 * 21 19 18 24 24 H 1.48506 * 109.47297 * 59.99967 * 23 21 19 25 25 H 1.48503 * 109.47261 * 300.00148 * 23 21 19 26 26 H 1.48500 * 109.47454 * 180.02562 * 23 21 19 27 27 C 1.47316 * 125.61784 * 180.19853 * 13 11 10 28 28 H 1.08999 * 109.85035 * 300.41770 * 27 13 11 29 29 C 1.52996 * 110.06566 * 61.68484 * 27 13 11 30 30 H 1.08995 * 109.46954 * 270.18345 * 1 2 3 31 31 H 1.09002 * 109.47183 * 30.18528 * 1 2 3 32 32 H 1.08998 * 109.46762 * 150.18579 * 1 2 3 33 33 H 1.08997 * 109.47369 * 210.02703 * 5 4 3 34 34 H 1.08997 * 109.47602 * 330.03217 * 5 4 3 35 35 H 1.09007 * 109.46836 * 54.99629 * 6 5 4 36 36 H 1.09006 * 109.46661 * 60.00137 * 7 6 5 37 37 H 1.08995 * 109.47310 * 179.97438 * 7 6 5 38 38 H 1.09001 * 109.47089 * 300.00110 * 7 6 5 39 39 H 1.08997 * 109.46988 * 299.99461 * 8 6 5 40 40 H 1.09002 * 109.47600 * 59.99935 * 8 6 5 41 41 H 1.09006 * 109.46863 * 179.97438 * 8 6 5 42 42 H 1.08995 * 110.36682 * 37.05906 * 14 13 11 43 43 H 1.09002 * 110.36427 * 274.74024 * 14 13 11 44 44 H 1.09001 * 111.00159 * 278.92851 * 15 14 13 45 45 H 1.08997 * 111.03976 * 155.09702 * 15 14 13 46 46 H 0.97000 * 120.00415 * 91.15412 * 18 16 15 47 47 H 0.97001 * 119.99542 * 359.97438 * 22 21 19 48 48 H 1.08993 * 109.47534 * 177.73289 * 29 27 13 49 49 H 1.09004 * 109.47109 * 297.73348 * 29 27 13 50 50 H 1.09000 * 109.47131 * 57.72819 * 29 27 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5071 0.0000 0.0000 3 7 2.2980 1.0779 0.0000 4 6 3.5453 0.6899 -0.0058 5 6 4.7440 1.6031 -0.0141 6 6 5.1578 1.9145 1.4256 7 6 6.4469 2.7385 1.4189 8 6 4.0474 2.7103 2.1146 9 8 3.5890 -0.6461 -0.0040 10 6 2.3137 -1.0992 0.0039 11 6 1.8828 -2.5016 0.0090 12 8 0.6967 -2.7737 0.0156 13 7 2.8004 -3.4887 0.0065 14 6 4.2629 -3.3022 -0.0018 15 6 4.8325 -4.6065 0.6097 16 6 3.8625 -5.6708 0.0321 17 1 4.1627 -5.9601 -0.9750 18 7 3.7978 -6.8430 0.9085 19 6 4.6810 -7.8755 0.7372 20 1 5.4254 -7.8254 -0.0436 21 6 4.6201 -8.9859 1.5679 22 7 3.7132 -9.0467 2.5199 23 14 5.8253 -10.3940 1.3348 24 1 7.2123 -9.8922 1.5077 25 1 5.6695 -10.9580 -0.0301 26 1 5.5519 -11.4514 2.3409 27 6 2.5075 -4.9324 0.0069 28 1 1.9274 -5.1922 0.8924 29 6 1.7320 -5.3110 -1.2564 30 1 -0.3633 0.0033 1.0276 31 1 -0.3634 0.8883 -0.5167 32 1 -0.3633 -0.8917 -0.5109 33 1 5.5695 1.1145 -0.5317 34 1 4.4909 2.5304 -0.5280 35 1 5.3252 0.9823 1.9653 36 1 6.2795 3.6707 0.8793 37 1 6.7415 2.9607 2.4445 38 1 7.2380 2.1715 0.9281 39 1 3.8800 3.6424 1.5750 40 1 3.1289 2.1233 2.1194 41 1 4.3420 2.9318 3.1404 42 1 4.5393 -2.4438 0.6105 43 1 4.6230 -3.1729 -1.0224 44 1 4.7824 -4.5820 1.6983 45 1 5.8534 -4.7839 0.2716 46 1 3.1295 -6.8879 1.6101 47 1 3.0877 -8.3154 2.6412 48 1 1.5556 -6.3866 -1.2659 49 1 0.7768 -4.7861 -1.2674 50 1 2.3110 -5.0300 -2.1361 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000987132724.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 20:01:38 Heat of formation + Delta-G solvation = -34.352928 kcal Electronic energy + Delta-G solvation = -29803.205480 eV Core-core repulsion = 25831.095186 eV Total energy + Delta-G solvation = -3972.110294 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 335.200 amu Computer time = 1.09 seconds Orbital eigenvalues (eV) -44.62261 -41.32344 -39.07585 -37.57138 -36.60367 -36.12951 -33.64189 -32.87447 -32.33678 -30.84441 -29.64105 -28.18759 -28.00185 -26.75343 -25.07209 -24.45801 -23.06085 -22.84598 -21.82208 -21.06563 -20.83104 -19.48468 -18.55816 -18.21984 -17.56237 -17.16432 -16.80277 -16.39899 -16.28987 -15.83223 -15.46770 -15.24949 -14.99797 -14.90758 -14.61813 -14.41654 -14.30057 -14.19862 -13.77089 -13.71106 -13.59775 -13.33562 -13.13194 -13.07059 -12.78996 -12.75910 -12.74783 -12.44738 -12.30789 -12.23003 -12.09228 -11.93868 -11.87902 -11.78856 -11.77579 -11.64070 -11.37991 -11.19258 -10.92236 -10.17081 -9.75753 -9.16943 -8.38879 -5.35352 -0.37253 1.15088 1.23249 1.60509 1.70232 1.76433 1.84209 1.86134 2.71931 2.74020 3.25014 3.39964 3.51625 3.55344 3.60444 3.80918 3.83012 3.91773 3.97398 4.04226 4.16374 4.22369 4.26060 4.31918 4.37133 4.51537 4.55405 4.58026 4.61063 4.64089 4.71055 4.75908 4.81511 4.84485 4.88973 4.90269 5.00408 5.06026 5.06701 5.09120 5.14037 5.22482 5.25730 5.28099 5.39789 5.44906 5.60656 6.16733 6.43934 6.47558 6.73745 7.04181 7.93132 8.06124 9.12284 Molecular weight = 335.20amu Principal moments of inertia in cm(-1) A = 0.014536 B = 0.002768 C = 0.002441 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1925.787125 B =10111.593538 C =11469.673319 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.078 4.078 2 C 0.079 3.921 3 N -0.499 5.499 4 C 0.234 3.766 5 C -0.024 4.024 6 C -0.091 4.091 7 C -0.141 4.141 8 C -0.149 4.149 9 O -0.185 6.185 10 C -0.136 4.136 11 C 0.617 3.383 12 O -0.543 6.543 13 N -0.601 5.601 14 C 0.109 3.891 15 C -0.144 4.144 16 C 0.178 3.822 17 H 0.073 0.927 18 N -0.739 5.739 19 C -0.327 4.327 20 H 0.075 0.925 21 C -0.104 4.104 22 N -0.977 5.977 23 Si 1.128 2.872 24 H -0.275 1.275 25 H -0.277 1.277 26 H -0.298 1.298 27 C 0.134 3.866 28 H 0.053 0.947 29 C -0.144 4.144 30 H 0.086 0.914 31 H 0.094 0.906 32 H 0.083 0.917 33 H 0.121 0.879 34 H 0.127 0.873 35 H 0.064 0.936 36 H 0.070 0.930 37 H 0.061 0.939 38 H 0.068 0.932 39 H 0.068 0.932 40 H 0.033 0.967 41 H 0.059 0.941 42 H 0.088 0.912 43 H 0.091 0.909 44 H 0.055 0.945 45 H 0.092 0.908 46 H 0.358 0.642 47 H 0.243 0.757 48 H 0.063 0.937 49 H 0.059 0.941 50 H 0.068 0.932 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 4.322 26.522 -7.411 27.875 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.134 4.134 2 C -0.045 4.045 3 N -0.229 5.229 4 C 0.028 3.972 5 C -0.062 4.062 6 C -0.110 4.110 7 C -0.198 4.198 8 C -0.206 4.206 9 O -0.073 6.073 10 C -0.190 4.190 11 C 0.406 3.594 12 O -0.424 6.424 13 N -0.333 5.333 14 C -0.013 4.013 15 C -0.185 4.185 16 C 0.068 3.932 17 H 0.091 0.909 18 N -0.380 5.380 19 C -0.458 4.458 20 H 0.093 0.907 21 C -0.295 4.295 22 N -0.624 5.624 23 Si 0.952 3.048 24 H -0.201 1.201 25 H -0.203 1.203 26 H -0.224 1.224 27 C 0.030 3.970 28 H 0.072 0.928 29 C -0.202 4.202 30 H 0.104 0.896 31 H 0.113 0.887 32 H 0.102 0.898 33 H 0.139 0.861 34 H 0.145 0.855 35 H 0.082 0.918 36 H 0.089 0.911 37 H 0.080 0.920 38 H 0.087 0.913 39 H 0.087 0.913 40 H 0.052 0.948 41 H 0.078 0.922 42 H 0.106 0.894 43 H 0.109 0.891 44 H 0.073 0.927 45 H 0.111 0.889 46 H 0.190 0.810 47 H 0.053 0.947 48 H 0.082 0.918 49 H 0.078 0.922 50 H 0.087 0.913 Dipole moment (debyes) X Y Z Total from point charges 4.160 25.515 -7.036 26.792 hybrid contribution -0.920 0.443 0.105 1.026 sum 3.240 25.957 -6.931 27.061 Atomic orbital electron populations 1.20397 0.84440 1.04532 1.04080 1.22387 0.99138 0.86475 0.96534 1.70419 1.00906 1.30533 1.20993 1.27461 0.96415 0.79339 0.93943 1.20726 0.89241 0.96203 1.00037 1.21119 0.96893 0.99820 0.93206 1.21786 0.95043 1.00121 1.02883 1.21881 0.97412 1.00447 1.00875 1.84546 1.28845 1.24168 1.69694 1.22518 0.82165 0.95285 1.19057 1.16150 0.84683 0.81465 0.77118 1.90814 1.16256 1.82247 1.53034 1.48507 1.08000 1.05762 1.71010 1.22527 0.77709 0.98723 1.02352 1.23374 1.00856 0.94046 1.00222 1.21352 0.91301 0.86093 0.94469 0.90877 1.42520 1.39332 1.18441 1.37741 1.20350 1.11297 0.98388 1.15770 0.90703 1.27197 1.03625 1.03118 0.95520 1.71000 1.21344 1.34702 1.35394 0.82631 0.73450 0.72857 0.75825 1.20074 1.20274 1.22418 1.21800 0.97479 0.78856 0.98822 0.92848 1.21943 1.00262 1.01691 0.96349 0.89561 0.88723 0.89833 0.86076 0.85514 0.91775 0.91102 0.92001 0.91303 0.91262 0.94764 0.92161 0.89381 0.89131 0.92660 0.88913 0.80951 0.94676 0.91787 0.92212 0.91285 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.08 -1.77 9.87 71.24 0.70 -1.06 16 2 C 0.08 2.10 7.16 41.83 0.30 2.40 16 3 N -0.50 -11.90 10.53 -291.05 -3.06 -14.97 16 4 C 0.23 4.72 6.79 88.29 0.60 5.32 16 5 C -0.02 -0.27 5.32 29.85 0.16 -0.11 16 6 C -0.09 -1.01 2.91 -10.79 -0.03 -1.04 16 7 C -0.14 -0.97 9.19 71.98 0.66 -0.30 16 8 C -0.15 -2.01 9.00 71.98 0.65 -1.37 16 9 O -0.18 -4.47 8.07 -7.09 -0.06 -4.52 16 10 C -0.14 -3.88 6.96 24.04 0.17 -3.72 16 11 C 0.62 20.33 7.62 86.46 0.66 20.98 16 12 O -0.54 -20.09 13.87 -4.30 -0.06 -20.15 16 13 N -0.60 -19.15 3.08 -791.98 -2.44 -21.59 16 14 C 0.11 2.91 6.19 86.85 0.54 3.45 16 15 C -0.14 -4.65 6.77 31.99 0.22 -4.43 16 16 C 0.18 6.75 3.12 46.18 0.14 6.90 16 17 H 0.07 2.74 7.81 -2.39 -0.02 2.72 16 18 N -0.74 -36.09 5.24 -317.32 -1.66 -37.75 16 19 C -0.33 -17.57 9.97 84.03 0.84 -16.73 16 20 H 0.08 3.84 7.83 -2.91 -0.02 3.81 16 21 C -0.10 -5.87 5.50 84.86 0.47 -5.40 16 22 N -0.98 -60.78 13.70 21.65 0.30 -60.48 16 23 Si 1.13 50.61 29.92 68.60 2.05 52.66 16 24 H -0.27 -11.33 7.11 99.48 0.71 -10.62 16 25 H -0.28 -11.49 7.11 99.48 0.71 -10.79 16 26 H -0.30 -13.92 7.11 99.48 0.71 -13.21 16 27 C 0.13 4.79 3.22 45.28 0.15 4.94 16 28 H 0.05 2.18 7.70 -2.39 -0.02 2.16 16 29 C -0.14 -4.75 9.11 71.98 0.66 -4.10 16 30 H 0.09 1.86 8.14 -2.39 -0.02 1.84 16 31 H 0.09 1.75 8.14 -2.39 -0.02 1.73 16 32 H 0.08 2.12 6.48 -2.39 -0.02 2.11 16 33 H 0.12 0.82 8.14 -2.39 -0.02 0.80 16 34 H 0.13 1.00 8.14 -2.39 -0.02 0.98 16 35 H 0.06 0.88 8.14 -2.38 -0.02 0.86 16 36 H 0.07 0.35 8.14 -2.38 -0.02 0.33 16 37 H 0.06 0.45 8.14 -2.39 -0.02 0.43 16 38 H 0.07 0.37 8.14 -2.39 -0.02 0.36 16 39 H 0.07 0.80 8.14 -2.39 -0.02 0.78 16 40 H 0.03 0.64 6.82 -2.39 -0.02 0.62 16 41 H 0.06 0.75 8.14 -2.38 -0.02 0.73 16 42 H 0.09 2.18 6.25 -2.39 -0.01 2.16 16 43 H 0.09 2.06 8.14 -2.39 -0.02 2.04 16 44 H 0.05 2.00 8.14 -2.39 -0.02 1.98 16 45 H 0.09 2.75 8.14 -2.39 -0.02 2.73 16 46 H 0.36 18.84 6.37 -92.71 -0.59 18.25 16 47 H 0.24 15.17 6.77 -92.71 -0.63 14.54 16 48 H 0.06 2.20 8.14 -2.39 -0.02 2.18 16 49 H 0.06 2.01 6.93 -2.39 -0.02 2.00 16 50 H 0.07 2.02 8.14 -2.39 -0.02 2.00 16 Total: -1.00 -70.00 399.49 2.43 -67.57 By element: Atomic # 1 Polarization: 33.03 SS G_CDS: 0.49 Total: 33.51 kcal Atomic # 6 Polarization: -1.15 SS G_CDS: 6.87 Total: 5.72 kcal Atomic # 7 Polarization: -127.92 SS G_CDS: -6.87 Total: -134.79 kcal Atomic # 8 Polarization: -24.56 SS G_CDS: -0.12 Total: -24.68 kcal Atomic # 14 Polarization: 50.61 SS G_CDS: 2.05 Total: 52.66 kcal Total: -70.00 2.43 -67.57 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000987132724.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 33.217 kcal (2) G-P(sol) polarization free energy of solvation -69.997 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -36.780 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.427 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -67.570 kcal (6) G-S(sol) free energy of system = (1) + (5) -34.353 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.10 seconds