Wall clock time and date at job start Tue Mar 31 2020 20:01:54 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50692 * 1 3 3 N 1.33691 * 126.27502 * 2 1 4 4 C 1.30618 * 109.00097 * 180.02562 * 3 2 1 5 5 C 1.50691 * 125.42573 * 180.02562 * 4 3 2 6 6 C 1.53000 * 109.47106 * 90.03035 * 5 4 3 7 7 C 1.52999 * 109.47384 * 175.00000 * 6 5 4 8 8 C 1.53004 * 109.47030 * 294.99779 * 6 5 4 9 9 O 1.33668 * 109.14968 * 359.75594 * 4 3 2 10 10 C 1.35350 * 107.68287 * 0.39695 * 9 4 3 11 11 C 1.46718 * 126.64037 * 179.87399 * 10 9 4 12 12 O 1.21685 * 120.00133 * 179.67996 * 11 10 9 13 13 N 1.34777 * 120.00225 * 359.68721 * 11 10 9 14 14 C 1.47418 * 125.64942 * 0.05026 * 13 11 10 15 15 C 1.54908 * 104.83494 * 204.08841 * 14 13 11 16 16 H 1.09003 * 111.03938 * 204.90610 * 15 14 13 17 17 N 1.46499 * 111.00663 * 81.06187 * 15 14 13 18 18 C 1.36939 * 119.99933 * 93.08176 * 17 15 14 19 19 H 1.08001 * 119.99700 * 359.72658 * 18 17 15 20 20 C 1.38810 * 120.00095 * 179.71972 * 18 17 15 21 21 N 1.31612 * 120.00054 * 179.97438 * 20 18 17 22 22 Si 1.86800 * 119.99751 * 0.02562 * 20 18 17 23 23 H 1.48500 * 109.47517 * 89.99708 * 22 20 18 24 24 H 1.48502 * 109.46736 * 209.99481 * 22 20 18 25 25 H 1.48496 * 109.47375 * 329.99177 * 22 20 18 26 26 C 1.55161 * 101.58051 * 322.98570 * 15 14 13 27 27 C 1.47024 * 125.64726 * 179.97438 * 13 11 10 28 28 H 1.09001 * 109.88590 * 59.56778 * 27 13 11 29 29 C 1.52993 * 110.01272 * 298.47471 * 27 13 11 30 30 H 1.09006 * 109.47287 * 269.97157 * 1 2 3 31 31 H 1.09000 * 109.47333 * 29.97036 * 1 2 3 32 32 H 1.08998 * 109.47461 * 149.97555 * 1 2 3 33 33 H 1.09004 * 109.47073 * 210.02464 * 5 4 3 34 34 H 1.08998 * 109.47728 * 330.02820 * 5 4 3 35 35 H 1.09006 * 109.47309 * 54.99896 * 6 5 4 36 36 H 1.08997 * 109.47524 * 59.99564 * 7 6 5 37 37 H 1.09002 * 109.47185 * 180.02562 * 7 6 5 38 38 H 1.09001 * 109.47022 * 299.99741 * 7 6 5 39 39 H 1.09002 * 109.46726 * 60.00157 * 8 6 5 40 40 H 1.09002 * 109.46924 * 179.97438 * 8 6 5 41 41 H 1.08997 * 109.46792 * 299.99770 * 8 6 5 42 42 H 1.09000 * 110.37044 * 85.24601 * 14 13 11 43 43 H 1.09006 * 110.36755 * 322.92409 * 14 13 11 44 44 H 0.97001 * 119.99790 * 272.80150 * 17 15 14 45 45 H 0.96998 * 120.00381 * 180.02562 * 21 20 18 46 46 H 1.08996 * 110.72196 * 153.86418 * 26 15 14 47 47 H 1.08990 * 110.72307 * 276.96702 * 26 15 14 48 48 H 1.09001 * 109.47132 * 302.11233 * 29 27 13 49 49 H 1.08995 * 109.47811 * 62.11370 * 29 27 13 50 50 H 1.08997 * 109.47295 * 182.12063 * 29 27 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5069 0.0000 0.0000 3 7 2.2979 1.0778 0.0000 4 6 3.5452 0.6899 -0.0006 5 6 4.7439 1.6031 -0.0002 6 6 5.1504 1.9106 1.4424 7 6 6.4395 2.7346 1.4445 8 6 4.0365 2.7045 2.1279 9 8 3.5889 -0.6460 0.0045 10 6 2.3136 -1.0992 -0.0007 11 6 1.8826 -2.5016 -0.0005 12 8 0.6966 -2.7737 0.0003 13 7 2.8004 -3.4886 -0.0012 14 6 4.2627 -3.3022 -0.0011 15 6 4.8291 -4.6076 -0.6132 16 1 5.8518 -4.7844 -0.2802 17 7 4.7538 -4.5776 -2.0760 18 6 5.8226 -4.1328 -2.8075 19 1 6.7193 -3.8000 -2.3059 20 6 5.7534 -4.1098 -4.1937 21 7 6.7804 -3.6818 -4.8968 22 14 4.2022 -4.6849 -5.0611 23 1 3.2816 -3.5342 -5.2440 24 1 4.5576 -5.2501 -6.3876 25 1 3.5345 -5.7278 -4.2416 26 6 3.8622 -5.6709 -0.0283 27 6 2.5089 -4.9297 -0.0007 28 1 1.9256 -5.1903 -0.8838 29 6 1.7345 -5.3067 1.2638 30 1 -0.3634 -0.0005 1.0277 31 1 -0.3634 0.8902 -0.5134 32 1 -0.3634 -0.8897 -0.5142 33 1 5.5720 1.1158 -0.5150 34 1 4.4934 2.5318 -0.5129 35 1 5.3151 0.9769 1.9804 36 1 6.2749 3.6682 0.9066 37 1 6.7293 2.9532 2.4723 38 1 7.2331 2.1690 0.9562 39 1 3.1181 2.1174 2.1265 40 1 4.3259 2.9232 3.1558 41 1 3.8719 3.6381 1.5900 42 1 4.6284 -3.1709 1.0173 43 1 4.5359 -2.4450 -0.6166 44 1 3.9485 -4.8766 -2.5264 45 1 6.7320 -3.6654 -5.8654 46 1 3.8106 -6.5443 -0.6783 47 1 4.1678 -5.9582 0.9777 48 1 2.3156 -5.0271 2.1426 49 1 0.7804 -4.7799 1.2764 50 1 1.5560 -6.3819 1.2735 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000989543848.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 20:01:54 Heat of formation + Delta-G solvation = -33.168517 kcal Electronic energy + Delta-G solvation = -30589.833680 eV Core-core repulsion = 26617.774745 eV Total energy + Delta-G solvation = -3972.058934 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 335.200 amu Computer time = 1.11 seconds Orbital eigenvalues (eV) -44.58395 -41.24523 -39.01187 -37.57100 -36.45656 -35.91049 -33.54645 -33.30840 -32.41251 -30.68473 -29.64958 -28.28800 -27.99810 -26.81599 -25.48354 -24.25841 -23.06129 -22.55470 -21.57969 -21.04624 -20.62607 -19.78215 -18.52188 -18.14871 -17.70431 -17.05500 -16.59615 -16.36125 -16.22311 -15.85920 -15.32733 -15.28207 -14.90505 -14.78582 -14.68984 -14.46283 -14.29233 -14.09379 -13.75470 -13.69664 -13.58441 -13.36004 -13.26265 -13.09185 -13.04127 -12.83202 -12.75909 -12.40520 -12.29547 -12.19285 -12.09658 -12.04342 -11.90543 -11.81891 -11.78131 -11.64436 -11.56386 -11.22209 -11.09233 -10.11092 -9.72678 -9.30170 -8.05957 -5.38441 -0.32509 1.23664 1.27788 1.30528 1.33888 1.39196 1.88814 1.93787 2.42441 2.75619 3.23805 3.32547 3.50794 3.58423 3.72848 3.78071 3.80886 3.91322 4.02255 4.03112 4.28764 4.29204 4.38611 4.40335 4.55252 4.58854 4.59776 4.62964 4.65441 4.71901 4.74341 4.81708 4.84707 4.87773 4.93120 5.00705 5.03079 5.06181 5.11839 5.14062 5.21516 5.24426 5.29219 5.39487 5.41308 5.44564 5.75785 6.18325 6.24693 6.46262 6.83714 7.03374 7.79479 7.96058 9.14923 Molecular weight = 335.20amu Principal moments of inertia in cm(-1) A = 0.009012 B = 0.004451 C = 0.003667 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 3106.260830 B = 6288.807704 C = 7634.831415 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.073 4.073 2 C 0.071 3.929 3 N -0.498 5.498 4 C 0.227 3.773 5 C -0.029 4.029 6 C -0.087 4.087 7 C -0.142 4.142 8 C -0.145 4.145 9 O -0.187 6.187 10 C -0.139 4.139 11 C 0.614 3.386 12 O -0.544 6.544 13 N -0.594 5.594 14 C 0.079 3.921 15 C 0.163 3.837 16 H 0.093 0.907 17 N -0.741 5.741 18 C -0.223 4.223 19 H 0.071 0.929 20 C -0.053 4.053 21 N -0.977 5.977 22 Si 0.936 3.064 23 H -0.295 1.295 24 H -0.293 1.293 25 H -0.252 1.252 26 C -0.124 4.124 27 C 0.129 3.871 28 H 0.058 0.942 29 C -0.148 4.148 30 H 0.094 0.906 31 H 0.090 0.910 32 H 0.081 0.919 33 H 0.105 0.895 34 H 0.123 0.877 35 H 0.067 0.933 36 H 0.068 0.932 37 H 0.069 0.931 38 H 0.061 0.939 39 H 0.035 0.965 40 H 0.067 0.933 41 H 0.066 0.934 42 H 0.088 0.912 43 H 0.061 0.939 44 H 0.361 0.639 45 H 0.257 0.743 46 H 0.090 0.910 47 H 0.117 0.883 48 H 0.066 0.934 49 H 0.048 0.952 50 H 0.090 0.910 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -6.361 7.285 17.644 20.120 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.130 4.130 2 C -0.054 4.054 3 N -0.228 5.228 4 C 0.022 3.978 5 C -0.066 4.066 6 C -0.106 4.106 7 C -0.199 4.199 8 C -0.202 4.202 9 O -0.074 6.074 10 C -0.193 4.193 11 C 0.403 3.597 12 O -0.425 6.425 13 N -0.325 5.325 14 C -0.046 4.046 15 C 0.053 3.947 16 H 0.111 0.889 17 N -0.383 5.383 18 C -0.354 4.354 19 H 0.089 0.911 20 C -0.245 4.245 21 N -0.627 5.627 22 Si 0.765 3.235 23 H -0.223 1.223 24 H -0.219 1.219 25 H -0.177 1.177 26 C -0.163 4.163 27 C 0.027 3.973 28 H 0.076 0.924 29 C -0.206 4.206 30 H 0.112 0.888 31 H 0.108 0.892 32 H 0.100 0.900 33 H 0.124 0.876 34 H 0.141 0.859 35 H 0.085 0.915 36 H 0.087 0.913 37 H 0.088 0.912 38 H 0.080 0.920 39 H 0.054 0.946 40 H 0.086 0.914 41 H 0.085 0.915 42 H 0.106 0.894 43 H 0.079 0.921 44 H 0.194 0.806 45 H 0.066 0.934 46 H 0.108 0.892 47 H 0.135 0.865 48 H 0.085 0.915 49 H 0.067 0.933 50 H 0.109 0.891 Dipole moment (debyes) X Y Z Total from point charges -6.924 7.816 17.590 20.456 hybrid contribution -0.546 -0.796 -1.363 1.671 sum -7.470 7.020 16.227 19.194 Atomic orbital electron populations 1.20372 0.84003 1.04269 1.04321 1.22460 0.99317 0.86419 0.97159 1.70372 1.00666 1.30690 1.21039 1.27348 0.96425 0.79494 0.94547 1.20694 0.89223 0.96032 1.00696 1.21095 0.97072 1.00003 0.92420 1.21793 0.95008 0.99980 1.03116 1.21852 0.97181 1.00226 1.00966 1.84615 1.29354 1.24122 1.69277 1.22849 0.81916 0.96233 1.18321 1.16083 0.84850 0.81422 0.77337 1.90771 1.15886 1.82252 1.53628 1.48442 1.07452 1.06539 1.70058 1.23341 0.78460 1.01660 1.01185 1.21601 0.98891 0.91980 0.82194 0.88871 1.42735 1.15356 1.77933 1.02249 1.19066 0.94081 1.33246 0.89040 0.91115 1.25274 0.99609 1.02474 0.97109 1.69827 1.32032 1.55022 1.05822 0.85700 0.80724 0.78495 0.78590 1.22270 1.21948 1.17695 1.23091 0.91793 0.97603 1.03767 1.21760 0.97849 0.78395 0.99298 0.92412 1.22039 0.99874 1.02843 0.95877 0.88786 0.89173 0.89991 0.87642 0.85882 0.91479 0.91297 0.91163 0.92001 0.94578 0.91447 0.91538 0.89410 0.92053 0.80636 0.93434 0.89184 0.86474 0.91519 0.93302 0.89146 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.07 -1.91 9.87 71.23 0.70 -1.20 16 2 C 0.07 2.28 7.16 41.83 0.30 2.58 16 3 N -0.50 -15.21 10.53 -291.07 -3.06 -18.28 16 4 C 0.23 6.56 6.79 88.29 0.60 7.15 16 5 C -0.03 -0.58 5.32 29.85 0.16 -0.42 16 6 C -0.09 -1.45 2.91 -10.79 -0.03 -1.49 16 7 C -0.14 -1.78 9.19 71.98 0.66 -1.12 16 8 C -0.14 -2.47 9.00 71.98 0.65 -1.82 16 9 O -0.19 -6.25 8.07 -7.20 -0.06 -6.30 16 10 C -0.14 -4.84 6.96 24.04 0.17 -4.67 16 11 C 0.61 22.05 7.62 86.46 0.66 22.71 16 12 O -0.54 -20.47 13.84 -4.30 -0.06 -20.53 16 13 N -0.59 -19.48 3.07 -792.68 -2.43 -21.92 16 14 C 0.08 2.53 5.88 86.86 0.51 3.04 16 15 C 0.16 5.39 3.72 46.38 0.17 5.56 16 16 H 0.09 2.96 8.09 -2.39 -0.02 2.94 16 17 N -0.74 -32.51 5.04 -316.37 -1.59 -34.10 16 18 C -0.22 -12.01 10.44 84.03 0.88 -11.14 16 19 H 0.07 4.07 8.06 -2.91 -0.02 4.05 16 20 C -0.05 -3.02 5.50 84.86 0.47 -2.56 16 21 N -0.98 -61.06 13.97 21.65 0.30 -60.76 16 22 Si 0.94 45.90 27.74 68.60 1.90 47.81 16 23 H -0.30 -14.89 7.11 99.48 0.71 -14.18 16 24 H -0.29 -14.46 7.11 99.48 0.71 -13.75 16 25 H -0.25 -11.19 6.52 99.48 0.65 -10.54 16 26 C -0.12 -3.08 6.07 31.79 0.19 -2.89 16 27 C 0.13 3.63 3.44 45.34 0.16 3.78 16 28 H 0.06 1.82 8.14 -2.39 -0.02 1.80 16 29 C -0.15 -3.36 9.11 71.98 0.66 -2.71 16 30 H 0.09 2.14 8.14 -2.38 -0.02 2.12 16 31 H 0.09 2.04 8.14 -2.39 -0.02 2.02 16 32 H 0.08 2.36 6.47 -2.39 -0.02 2.35 16 33 H 0.11 2.08 8.14 -2.39 -0.02 2.06 16 34 H 0.12 2.14 8.14 -2.39 -0.02 2.12 16 35 H 0.07 1.24 8.14 -2.38 -0.02 1.22 16 36 H 0.07 0.75 8.14 -2.39 -0.02 0.73 16 37 H 0.07 0.76 8.14 -2.39 -0.02 0.74 16 38 H 0.06 0.79 8.14 -2.39 -0.02 0.77 16 39 H 0.04 0.78 6.82 -2.39 -0.02 0.77 16 40 H 0.07 0.96 8.14 -2.39 -0.02 0.94 16 41 H 0.07 1.03 8.14 -2.39 -0.02 1.01 16 42 H 0.09 2.36 8.14 -2.39 -0.02 2.34 16 43 H 0.06 2.37 6.25 -2.38 -0.01 2.35 16 44 H 0.36 16.04 5.73 -92.71 -0.53 15.51 16 45 H 0.26 15.47 8.31 -92.71 -0.77 14.70 16 46 H 0.09 2.23 8.14 -2.39 -0.02 2.21 16 47 H 0.12 2.12 7.86 -2.39 -0.02 2.10 16 48 H 0.07 1.37 8.14 -2.39 -0.02 1.35 16 49 H 0.05 1.31 6.90 -2.39 -0.02 1.29 16 50 H 0.09 1.59 8.14 -2.39 -0.02 1.57 16 Total: -1.00 -70.90 398.58 2.24 -68.67 By element: Atomic # 1 Polarization: 30.25 SS G_CDS: 0.34 Total: 30.59 kcal Atomic # 6 Polarization: 7.93 SS G_CDS: 6.90 Total: 14.82 kcal Atomic # 7 Polarization: -128.27 SS G_CDS: -6.79 Total: -135.06 kcal Atomic # 8 Polarization: -26.71 SS G_CDS: -0.12 Total: -26.83 kcal Atomic # 14 Polarization: 45.90 SS G_CDS: 1.90 Total: 47.81 kcal Total: -70.90 2.24 -68.67 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000989543848.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 35.497 kcal (2) G-P(sol) polarization free energy of solvation -70.904 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -35.407 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.238 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -68.666 kcal (6) G-S(sol) free energy of system = (1) + (5) -33.169 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.11 seconds