Wall clock time and date at job start Tue Mar 31 2020 19:03:58 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50703 * 1 3 3 O 1.34249 * 126.52558 * 2 1 4 4 C 1.34055 * 108.22701 * 179.83754 * 3 2 1 5 5 C 1.50697 * 125.37771 * 180.12876 * 4 3 2 6 6 C 1.53002 * 109.47341 * 300.35213 * 5 4 3 7 7 C 1.53002 * 109.47104 * 60.35386 * 5 4 3 8 8 N 1.29931 * 109.24263 * 0.43708 * 4 3 2 9 9 C 1.36069 * 108.47611 * 359.73209 * 8 4 3 10 10 C 1.47423 * 126.44722 * 180.02562 * 9 8 4 11 11 O 1.21614 * 119.99529 * 179.97438 * 10 9 8 12 12 N 1.34774 * 119.99804 * 359.97388 * 10 9 8 13 13 C 1.47012 * 125.65164 * 0.02562 * 12 10 9 14 14 C 1.54327 * 107.27184 * 181.02397 * 13 12 10 15 15 H 1.09003 * 110.71969 * 140.55858 * 14 13 12 16 16 N 1.46494 * 110.72023 * 263.65077 * 14 13 12 17 17 C 1.36937 * 120.00404 * 273.54400 * 16 14 13 18 18 H 1.07997 * 119.99804 * 0.02562 * 17 16 14 19 19 C 1.38813 * 120.00063 * 179.97438 * 17 16 14 20 20 N 1.31621 * 120.00176 * 0.02562 * 19 17 16 21 21 Si 1.86804 * 119.99880 * 180.02562 * 19 17 16 22 22 H 1.48496 * 109.47016 * 59.99759 * 21 19 17 23 23 H 1.48492 * 109.47032 * 180.02562 * 21 19 17 24 24 H 1.48501 * 109.46833 * 300.00191 * 21 19 17 25 25 C 1.55150 * 102.94079 * 22.19713 * 14 13 12 26 26 C 1.52997 * 111.00972 * 82.57162 * 25 14 13 27 27 C 1.53005 * 111.00403 * 206.38819 * 25 14 13 28 28 C 1.47429 * 125.64284 * 179.71988 * 12 10 9 29 29 H 1.09002 * 109.47152 * 269.68817 * 1 2 3 30 30 H 1.09001 * 109.46980 * 149.68917 * 1 2 3 31 31 H 1.09004 * 109.47113 * 29.68898 * 1 2 3 32 32 H 1.09007 * 109.47365 * 180.35451 * 5 4 3 33 33 H 1.09009 * 109.47153 * 180.02562 * 6 5 4 34 34 H 1.08998 * 109.47439 * 300.00121 * 6 5 4 35 35 H 1.08995 * 109.47247 * 60.00272 * 6 5 4 36 36 H 1.08994 * 109.47272 * 59.99740 * 7 5 4 37 37 H 1.09000 * 109.46944 * 179.97438 * 7 5 4 38 38 H 1.08995 * 109.47150 * 299.99523 * 7 5 4 39 39 H 1.09006 * 109.88509 * 300.44106 * 13 12 10 40 40 H 1.08999 * 109.88582 * 61.60790 * 13 12 10 41 41 H 0.97000 * 120.00029 * 93.54819 * 16 14 13 42 42 H 0.96996 * 119.99691 * 179.97438 * 20 19 17 43 43 H 1.08999 * 109.47121 * 59.99615 * 26 25 14 44 44 H 1.08996 * 109.47562 * 179.97438 * 26 25 14 45 45 H 1.08998 * 109.46929 * 299.99684 * 26 25 14 46 46 H 1.09003 * 109.47391 * 59.99350 * 27 25 14 47 47 H 1.08994 * 109.47693 * 179.97438 * 27 25 14 48 48 H 1.09010 * 109.46921 * 299.99553 * 27 25 14 49 49 H 1.08994 * 110.36614 * 274.74264 * 28 12 10 50 50 H 1.08999 * 110.37026 * 37.06632 * 28 12 10 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 8 2.3061 1.0788 0.0000 4 6 3.5788 0.6579 0.0036 5 6 4.7929 1.5506 0.0076 6 6 4.7758 2.4405 -1.2368 7 6 4.7774 2.4270 1.2617 8 7 3.6002 -0.6412 -0.0035 9 6 2.3170 -1.0936 -0.0060 10 6 1.8853 -2.5032 -0.0132 11 8 0.7002 -2.7762 -0.0143 12 7 2.8041 -3.4893 -0.0186 13 6 4.2622 -3.3019 -0.0175 14 6 4.9045 -4.7047 -0.0515 15 1 5.7795 -4.7126 -0.7015 16 7 5.2611 -5.1444 1.2996 17 6 6.4712 -4.7944 1.8366 18 1 7.1626 -4.1939 1.2642 19 6 6.8087 -5.2107 3.1172 20 7 5.9659 -5.9422 3.8150 21 14 8.4592 -4.7327 3.8499 22 1 8.5619 -3.2527 3.9150 23 1 8.5758 -5.2981 5.2180 24 1 9.5522 -5.2678 2.9988 25 6 3.7748 -5.5899 -0.6409 26 6 3.7493 -5.5017 -2.1682 27 6 3.9193 -7.0419 -0.1807 28 6 2.5132 -4.9346 -0.0201 29 1 -0.3633 -0.0056 1.0277 30 1 -0.3633 -0.8872 -0.5187 31 1 -0.3633 0.8928 -0.5090 32 1 5.6945 0.9379 0.0037 33 1 5.6543 3.0859 -1.2341 34 1 4.7869 1.8162 -2.1302 35 1 3.8744 3.0533 -1.2329 36 1 4.7896 1.7930 2.1482 37 1 5.6559 3.0723 1.2648 38 1 3.8761 3.0398 1.2656 39 1 4.5638 -2.7346 -0.8981 40 1 4.5678 -2.7761 0.8871 41 1 4.6400 -5.6835 1.8140 42 1 6.2020 -6.2333 4.7096 43 1 4.7045 -5.8421 -2.5678 44 1 2.9486 -6.1319 -2.5552 45 1 3.5768 -4.4685 -2.4696 46 1 3.8658 -7.0854 0.9071 47 1 3.1146 -7.6403 -0.6079 48 1 4.8803 -7.4345 -0.5132 49 1 2.3594 -5.2917 0.9981 50 1 1.6366 -5.1445 -0.6330 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000995814048.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 19:03:58 Heat of formation + Delta-G solvation = -9.067966 kcal Electronic energy + Delta-G solvation = -30569.941349 eV Core-core repulsion = 26598.927493 eV Total energy + Delta-G solvation = -3971.013856 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 335.200 amu Computer time = 1.01 seconds Orbital eigenvalues (eV) -43.41544 -39.81827 -37.84439 -35.92386 -34.73508 -33.85594 -33.01967 -31.96647 -30.69227 -27.88569 -27.72241 -27.47630 -26.63473 -25.99668 -23.97455 -23.35285 -22.44807 -21.43372 -20.77832 -18.97073 -18.56468 -17.23693 -16.94247 -16.89899 -16.15643 -15.59295 -15.19358 -15.09436 -14.70187 -14.40647 -14.06556 -13.81564 -13.65347 -13.51486 -13.45016 -13.00460 -12.85982 -12.65995 -12.56323 -12.47842 -12.36997 -12.05633 -11.83348 -11.75462 -11.59686 -11.54769 -11.42342 -11.28252 -11.09962 -10.96175 -10.85772 -10.66245 -10.49919 -10.28243 -10.21757 -9.85835 -9.73430 -9.58193 -8.92239 -8.77765 -8.09897 -6.98745 -5.77872 -3.06845 1.15732 2.13890 2.46459 3.28278 3.43376 3.48031 3.48870 3.54174 3.81267 4.51989 4.57193 4.64793 4.74973 4.76513 4.93468 5.05737 5.18278 5.18409 5.29633 5.32581 5.34771 5.40348 5.50261 5.53115 5.56349 5.66368 5.69234 5.82707 5.85561 5.87145 5.90320 5.92612 5.94349 6.00595 6.03907 6.13940 6.20071 6.24966 6.32161 6.40684 6.44901 6.52321 6.73727 6.73937 6.96065 6.99025 7.58883 7.69811 7.92568 8.39918 8.43141 9.51952 10.07465 10.42565 11.44516 Molecular weight = 335.20amu Principal moments of inertia in cm(-1) A = 0.008954 B = 0.004407 C = 0.003358 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 3126.264814 B = 6352.720062 C = 8337.218014 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.072 4.072 2 C 0.028 3.972 3 O -0.197 6.197 4 C 0.193 3.807 5 C 0.003 3.997 6 C -0.148 4.148 7 C -0.150 4.150 8 N -0.442 5.442 9 C -0.062 4.062 10 C 0.610 3.390 11 O -0.553 6.553 12 N -0.586 5.586 13 C 0.088 3.912 14 C 0.175 3.825 15 H 0.068 0.932 16 N -0.712 5.712 17 C -0.240 4.240 18 H 0.071 0.929 19 C -0.009 4.009 20 N -0.932 5.932 21 Si 0.906 3.094 22 H -0.286 1.286 23 H -0.292 1.292 24 H -0.286 1.286 25 C -0.090 4.090 26 C -0.128 4.128 27 C -0.124 4.124 28 C 0.121 3.879 29 H 0.089 0.911 30 H 0.111 0.889 31 H 0.076 0.924 32 H 0.117 0.883 33 H 0.073 0.927 34 H 0.061 0.939 35 H 0.061 0.939 36 H 0.064 0.936 37 H 0.073 0.927 38 H 0.061 0.939 39 H 0.059 0.941 40 H 0.082 0.918 41 H 0.386 0.614 42 H 0.256 0.744 43 H 0.058 0.942 44 H 0.052 0.948 45 H 0.052 0.948 46 H 0.069 0.931 47 H 0.044 0.956 48 H 0.060 0.940 49 H 0.071 0.929 50 H 0.071 0.929 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -6.646 13.490 -11.433 18.891 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.128 4.128 2 C -0.028 4.028 3 O -0.084 6.084 4 C -0.016 4.016 5 C -0.016 4.016 6 C -0.206 4.206 7 C -0.208 4.208 8 N -0.170 5.170 9 C -0.182 4.182 10 C 0.398 3.602 11 O -0.434 6.434 12 N -0.316 5.316 13 C -0.037 4.037 14 C 0.063 3.937 15 H 0.086 0.914 16 N -0.353 5.353 17 C -0.371 4.371 18 H 0.089 0.911 19 C -0.206 4.206 20 N -0.579 5.579 21 Si 0.737 3.263 22 H -0.213 1.213 23 H -0.218 1.218 24 H -0.212 1.212 25 C -0.091 4.091 26 C -0.186 4.186 27 C -0.182 4.182 28 C -0.001 4.001 29 H 0.107 0.893 30 H 0.129 0.871 31 H 0.095 0.905 32 H 0.135 0.865 33 H 0.091 0.909 34 H 0.081 0.919 35 H 0.080 0.920 36 H 0.083 0.917 37 H 0.092 0.908 38 H 0.080 0.920 39 H 0.077 0.923 40 H 0.100 0.900 41 H 0.221 0.779 42 H 0.066 0.934 43 H 0.077 0.923 44 H 0.072 0.928 45 H 0.071 0.929 46 H 0.088 0.912 47 H 0.063 0.937 48 H 0.079 0.921 49 H 0.090 0.910 50 H 0.089 0.911 Dipole moment (debyes) X Y Z Total from point charges -6.569 13.063 -11.359 18.516 hybrid contribution 0.249 0.598 0.815 1.041 sum -6.320 13.661 -10.544 18.378 Atomic orbital electron populations 1.20534 0.82751 1.04992 1.04514 1.23646 0.94961 0.83409 1.00830 1.84258 1.18035 1.36207 1.69932 1.26231 0.83888 0.90338 1.01168 1.19767 0.90099 0.94285 0.97460 1.21886 1.02951 0.99420 0.96359 1.21892 1.02887 0.99571 0.96441 1.70999 1.21441 1.08380 1.16183 1.21453 0.88805 0.95440 1.12497 1.16315 0.84572 0.82137 0.77200 1.90729 1.15978 1.83214 1.53462 1.48157 1.08007 1.05855 1.69571 1.23254 0.77539 1.00817 1.02130 1.21304 0.93962 0.89601 0.88810 0.91376 1.42431 1.18954 1.62208 1.11739 1.19175 0.93447 1.27045 0.97464 0.91120 1.24716 0.98251 1.00516 0.97084 1.69646 1.35742 1.40765 1.11787 0.86289 0.83806 0.77954 0.78252 1.21306 1.21782 1.21243 1.22053 0.95422 0.96487 0.95153 1.21666 1.01560 1.01386 0.93999 1.21571 1.01084 0.93153 1.02412 1.22364 0.97589 0.79141 1.00989 0.89256 0.87056 0.90510 0.86525 0.90852 0.91944 0.91992 0.91667 0.90830 0.92009 0.92287 0.89989 0.77852 0.93449 0.92296 0.92847 0.92931 0.91214 0.93657 0.92065 0.91040 0.91084 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.07 -0.80 9.88 36.01 0.36 -0.44 16 2 C 0.03 0.41 7.44 -35.08 -0.26 0.15 16 3 O -0.20 -2.71 10.73 6.52 0.07 -2.64 16 4 C 0.19 2.69 6.81 -13.08 -0.09 2.60 16 5 C 0.00 0.03 3.39 -91.77 -0.31 -0.28 16 6 C -0.15 -1.16 9.18 37.16 0.34 -0.82 16 7 C -0.15 -1.32 9.18 37.16 0.34 -0.98 16 8 N -0.44 -7.47 8.84 -7.65 -0.07 -7.54 16 9 C -0.06 -1.07 6.83 -83.02 -0.57 -1.64 16 10 C 0.61 11.57 7.85 -12.52 -0.10 11.47 16 11 O -0.55 -10.91 15.06 5.27 0.08 -10.83 16 12 N -0.59 -10.99 3.31 -171.64 -0.57 -11.56 16 13 C 0.09 1.69 4.95 -3.07 -0.02 1.68 16 14 C 0.18 3.42 2.85 -66.10 -0.19 3.23 16 15 H 0.07 1.32 8.02 -51.93 -0.42 0.91 16 16 N -0.71 -17.14 4.62 -51.66 -0.24 -17.38 16 17 C -0.24 -6.44 9.98 -15.06 -0.15 -6.59 16 18 H 0.07 1.84 7.83 -52.49 -0.41 1.43 16 19 C -0.01 -0.27 5.50 -17.43 -0.10 -0.36 16 20 N -0.93 -27.62 13.06 55.49 0.72 -26.89 16 21 Si 0.91 22.07 29.55 -169.99 -5.02 17.05 16 22 H -0.29 -6.90 7.11 56.52 0.40 -6.50 16 23 H -0.29 -7.22 7.11 56.52 0.40 -6.82 16 24 H -0.29 -6.83 7.11 56.52 0.40 -6.43 16 25 C -0.09 -1.47 0.84 -152.24 -0.13 -1.60 16 26 C -0.13 -1.78 8.58 37.16 0.32 -1.46 16 27 C -0.12 -2.03 8.22 37.16 0.31 -1.72 16 28 C 0.12 2.13 5.83 -2.40 -0.01 2.12 16 29 H 0.09 0.92 8.14 -51.93 -0.42 0.50 16 30 H 0.11 1.37 6.48 -51.93 -0.34 1.03 16 31 H 0.08 0.65 8.14 -51.93 -0.42 0.22 16 32 H 0.12 1.20 8.14 -51.93 -0.42 0.77 16 33 H 0.07 0.43 8.14 -51.92 -0.42 0.01 16 34 H 0.06 0.52 8.14 -51.93 -0.42 0.10 16 35 H 0.06 0.48 8.14 -51.93 -0.42 0.05 16 36 H 0.06 0.67 8.14 -51.93 -0.42 0.24 16 37 H 0.07 0.50 8.14 -51.93 -0.42 0.07 16 38 H 0.06 0.52 8.14 -51.93 -0.42 0.10 16 39 H 0.06 1.08 7.64 -51.93 -0.40 0.68 16 40 H 0.08 1.84 7.65 -51.93 -0.40 1.44 16 41 H 0.39 9.92 6.12 -40.82 -0.25 9.67 16 42 H 0.26 7.41 8.31 -40.82 -0.34 7.07 16 43 H 0.06 0.76 8.14 -51.93 -0.42 0.34 16 44 H 0.05 0.66 8.14 -51.93 -0.42 0.24 16 45 H 0.05 0.75 7.91 -51.93 -0.41 0.34 16 46 H 0.07 1.31 6.39 -51.93 -0.33 0.97 16 47 H 0.04 0.62 8.14 -51.93 -0.42 0.20 16 48 H 0.06 1.01 8.14 -51.92 -0.42 0.59 16 49 H 0.07 1.36 7.99 -51.93 -0.41 0.94 16 50 H 0.07 1.17 7.95 -51.93 -0.41 0.76 16 LS Contribution 401.90 15.07 6.06 6.06 Total: -1.00 -31.80 401.90 -7.63 -39.44 By element: Atomic # 1 Polarization: 17.36 SS G_CDS: -8.41 Total: 8.95 kcal Atomic # 6 Polarization: 5.60 SS G_CDS: -0.26 Total: 5.35 kcal Atomic # 7 Polarization: -63.22 SS G_CDS: -0.15 Total: -63.37 kcal Atomic # 8 Polarization: -13.61 SS G_CDS: 0.15 Total: -13.46 kcal Atomic # 14 Polarization: 22.07 SS G_CDS: -5.02 Total: 17.05 kcal Total LS contribution 6.06 Total: 6.06 kcal Total: -31.80 -7.63 -39.44 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000995814048.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 30.368 kcal (2) G-P(sol) polarization free energy of solvation -31.803 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -1.436 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.632 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.436 kcal (6) G-S(sol) free energy of system = (1) + (5) -9.068 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.01 seconds