Wall clock time and date at job start Tue Mar 31 2020 19:03:56 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50703 * 1 3 3 O 1.34249 * 126.52558 * 2 1 4 4 C 1.34055 * 108.22701 * 179.83754 * 3 2 1 5 5 C 1.50697 * 125.37771 * 180.12876 * 4 3 2 6 6 C 1.53002 * 109.47341 * 300.35213 * 5 4 3 7 7 C 1.53002 * 109.47104 * 60.35386 * 5 4 3 8 8 N 1.29931 * 109.24263 * 0.43708 * 4 3 2 9 9 C 1.36069 * 108.47611 * 359.73209 * 8 4 3 10 10 C 1.47423 * 126.44722 * 180.02562 * 9 8 4 11 11 O 1.21614 * 119.99529 * 179.97438 * 10 9 8 12 12 N 1.34774 * 119.99804 * 359.97388 * 10 9 8 13 13 C 1.47012 * 125.65164 * 0.02562 * 12 10 9 14 14 C 1.54327 * 107.27184 * 181.02397 * 13 12 10 15 15 H 1.09003 * 110.71969 * 140.55858 * 14 13 12 16 16 N 1.46494 * 110.72023 * 263.65077 * 14 13 12 17 17 C 1.36937 * 120.00404 * 273.54400 * 16 14 13 18 18 H 1.07997 * 119.99804 * 0.02562 * 17 16 14 19 19 C 1.38813 * 120.00063 * 179.97438 * 17 16 14 20 20 N 1.31621 * 120.00176 * 0.02562 * 19 17 16 21 21 Si 1.86804 * 119.99880 * 180.02562 * 19 17 16 22 22 H 1.48496 * 109.47016 * 59.99759 * 21 19 17 23 23 H 1.48492 * 109.47032 * 180.02562 * 21 19 17 24 24 H 1.48501 * 109.46833 * 300.00191 * 21 19 17 25 25 C 1.55150 * 102.94079 * 22.19713 * 14 13 12 26 26 C 1.52997 * 111.00972 * 82.57162 * 25 14 13 27 27 C 1.53005 * 111.00403 * 206.38819 * 25 14 13 28 28 C 1.47429 * 125.64284 * 179.71988 * 12 10 9 29 29 H 1.09002 * 109.47152 * 269.68817 * 1 2 3 30 30 H 1.09001 * 109.46980 * 149.68917 * 1 2 3 31 31 H 1.09004 * 109.47113 * 29.68898 * 1 2 3 32 32 H 1.09007 * 109.47365 * 180.35451 * 5 4 3 33 33 H 1.09009 * 109.47153 * 180.02562 * 6 5 4 34 34 H 1.08998 * 109.47439 * 300.00121 * 6 5 4 35 35 H 1.08995 * 109.47247 * 60.00272 * 6 5 4 36 36 H 1.08994 * 109.47272 * 59.99740 * 7 5 4 37 37 H 1.09000 * 109.46944 * 179.97438 * 7 5 4 38 38 H 1.08995 * 109.47150 * 299.99523 * 7 5 4 39 39 H 1.09006 * 109.88509 * 300.44106 * 13 12 10 40 40 H 1.08999 * 109.88582 * 61.60790 * 13 12 10 41 41 H 0.97000 * 120.00029 * 93.54819 * 16 14 13 42 42 H 0.96996 * 119.99691 * 179.97438 * 20 19 17 43 43 H 1.08999 * 109.47121 * 59.99615 * 26 25 14 44 44 H 1.08996 * 109.47562 * 179.97438 * 26 25 14 45 45 H 1.08998 * 109.46929 * 299.99684 * 26 25 14 46 46 H 1.09003 * 109.47391 * 59.99350 * 27 25 14 47 47 H 1.08994 * 109.47693 * 179.97438 * 27 25 14 48 48 H 1.09010 * 109.46921 * 299.99553 * 27 25 14 49 49 H 1.08994 * 110.36614 * 274.74264 * 28 12 10 50 50 H 1.08999 * 110.37026 * 37.06632 * 28 12 10 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 8 2.3061 1.0788 0.0000 4 6 3.5788 0.6579 0.0036 5 6 4.7929 1.5506 0.0076 6 6 4.7758 2.4405 -1.2368 7 6 4.7774 2.4270 1.2617 8 7 3.6002 -0.6412 -0.0035 9 6 2.3170 -1.0936 -0.0060 10 6 1.8853 -2.5032 -0.0132 11 8 0.7002 -2.7762 -0.0143 12 7 2.8041 -3.4893 -0.0186 13 6 4.2622 -3.3019 -0.0175 14 6 4.9045 -4.7047 -0.0515 15 1 5.7795 -4.7126 -0.7015 16 7 5.2611 -5.1444 1.2996 17 6 6.4712 -4.7944 1.8366 18 1 7.1626 -4.1939 1.2642 19 6 6.8087 -5.2107 3.1172 20 7 5.9659 -5.9422 3.8150 21 14 8.4592 -4.7327 3.8499 22 1 8.5619 -3.2527 3.9150 23 1 8.5758 -5.2981 5.2180 24 1 9.5522 -5.2678 2.9988 25 6 3.7748 -5.5899 -0.6409 26 6 3.7493 -5.5017 -2.1682 27 6 3.9193 -7.0419 -0.1807 28 6 2.5132 -4.9346 -0.0201 29 1 -0.3633 -0.0056 1.0277 30 1 -0.3633 -0.8872 -0.5187 31 1 -0.3633 0.8928 -0.5090 32 1 5.6945 0.9379 0.0037 33 1 5.6543 3.0859 -1.2341 34 1 4.7869 1.8162 -2.1302 35 1 3.8744 3.0533 -1.2329 36 1 4.7896 1.7930 2.1482 37 1 5.6559 3.0723 1.2648 38 1 3.8761 3.0398 1.2656 39 1 4.5638 -2.7346 -0.8981 40 1 4.5678 -2.7761 0.8871 41 1 4.6400 -5.6835 1.8140 42 1 6.2020 -6.2333 4.7096 43 1 4.7045 -5.8421 -2.5678 44 1 2.9486 -6.1319 -2.5552 45 1 3.5768 -4.4685 -2.4696 46 1 3.8658 -7.0854 0.9071 47 1 3.1146 -7.6403 -0.6079 48 1 4.8803 -7.4345 -0.5132 49 1 2.3594 -5.2917 0.9981 50 1 1.6366 -5.1445 -0.6330 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000995814048.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 19:03:56 Heat of formation + Delta-G solvation = -29.611956 kcal Electronic energy + Delta-G solvation = -30570.832203 eV Core-core repulsion = 26598.927493 eV Total energy + Delta-G solvation = -3971.904710 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 335.200 amu Computer time = 1.14 seconds Orbital eigenvalues (eV) -44.56268 -41.30244 -39.33094 -36.76922 -35.95358 -35.70323 -34.49120 -32.99429 -32.60787 -29.48480 -28.94104 -28.13026 -28.02846 -27.23223 -25.76014 -24.69355 -23.48142 -22.97629 -21.93812 -20.40311 -19.92510 -19.10694 -18.34054 -18.09123 -17.33615 -17.09648 -16.54502 -16.40537 -16.16164 -15.77291 -15.48740 -15.24755 -14.93803 -14.68288 -14.46587 -14.38864 -14.20098 -13.80888 -13.79007 -13.56636 -13.41907 -13.25341 -13.07284 -13.03722 -12.83009 -12.74849 -12.72484 -12.61236 -12.46441 -12.20634 -12.16203 -12.10006 -12.01246 -11.95416 -11.66808 -11.46555 -11.33456 -11.19027 -10.88415 -10.00086 -9.57842 -9.00489 -7.91816 -5.20033 -0.03468 0.92388 1.38018 1.48090 1.50586 1.56339 1.89446 2.14961 2.57463 2.73732 3.31093 3.39261 3.52479 3.64941 3.79946 3.89125 3.89238 4.03342 4.04003 4.14517 4.22964 4.30722 4.38456 4.48330 4.52842 4.57063 4.65941 4.73676 4.76121 4.78227 4.85101 4.87591 4.87846 4.91485 4.99120 5.01719 5.04871 5.06705 5.10186 5.12361 5.26567 5.28620 5.29415 5.33791 5.38571 5.53749 5.59549 6.29129 6.36652 6.47978 6.96826 7.36617 8.09811 8.34412 9.31316 Molecular weight = 335.20amu Principal moments of inertia in cm(-1) A = 0.008954 B = 0.004407 C = 0.003358 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 3126.264814 B = 6352.720062 C = 8337.218014 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.070 4.070 2 C 0.043 3.957 3 O -0.190 6.190 4 C 0.200 3.800 5 C 0.000 4.000 6 C -0.141 4.141 7 C -0.146 4.146 8 N -0.477 5.477 9 C -0.104 4.104 10 C 0.604 3.396 11 O -0.567 6.567 12 N -0.592 5.592 13 C 0.110 3.890 14 C 0.168 3.832 15 H 0.074 0.926 16 N -0.721 5.721 17 C -0.236 4.236 18 H 0.077 0.923 19 C -0.071 4.071 20 N -0.969 5.969 21 Si 0.968 3.032 22 H -0.281 1.281 23 H -0.299 1.299 24 H -0.275 1.275 25 C -0.076 4.076 26 C -0.121 4.121 27 C -0.118 4.118 28 C 0.121 3.879 29 H 0.100 0.900 30 H 0.100 0.900 31 H 0.110 0.890 32 H 0.113 0.887 33 H 0.098 0.902 34 H 0.054 0.946 35 H 0.066 0.934 36 H 0.044 0.956 37 H 0.099 0.901 38 H 0.067 0.933 39 H 0.069 0.931 40 H 0.045 0.955 41 H 0.375 0.625 42 H 0.249 0.751 43 H 0.071 0.929 44 H 0.075 0.925 45 H 0.048 0.952 46 H 0.038 0.962 47 H 0.075 0.925 48 H 0.058 0.942 49 H 0.048 0.952 50 H 0.085 0.915 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -6.487 15.302 -13.294 21.283 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.126 4.126 2 C -0.015 4.015 3 O -0.077 6.077 4 C -0.010 4.010 5 C -0.019 4.019 6 C -0.199 4.199 7 C -0.203 4.203 8 N -0.206 5.206 9 C -0.222 4.222 10 C 0.394 3.606 11 O -0.448 6.448 12 N -0.322 5.322 13 C -0.015 4.015 14 C 0.057 3.943 15 H 0.092 0.908 16 N -0.361 5.361 17 C -0.367 4.367 18 H 0.095 0.905 19 C -0.263 4.263 20 N -0.620 5.620 21 Si 0.797 3.203 22 H -0.208 1.208 23 H -0.226 1.226 24 H -0.201 1.201 25 C -0.078 4.078 26 C -0.178 4.178 27 C -0.176 4.176 28 C -0.001 4.001 29 H 0.118 0.882 30 H 0.118 0.882 31 H 0.129 0.871 32 H 0.131 0.869 33 H 0.117 0.883 34 H 0.074 0.926 35 H 0.085 0.915 36 H 0.063 0.937 37 H 0.118 0.882 38 H 0.086 0.914 39 H 0.087 0.913 40 H 0.063 0.937 41 H 0.209 0.791 42 H 0.058 0.942 43 H 0.090 0.910 44 H 0.094 0.906 45 H 0.067 0.933 46 H 0.057 0.943 47 H 0.093 0.907 48 H 0.077 0.923 49 H 0.067 0.933 50 H 0.104 0.896 Dipole moment (debyes) X Y Z Total from point charges -6.408 14.890 -13.272 20.950 hybrid contribution 0.141 0.125 1.350 1.363 sum -6.267 15.014 -11.922 20.171 Atomic orbital electron populations 1.20674 0.80334 1.06099 1.05458 1.24207 0.96203 0.82796 0.98246 1.84295 1.17982 1.35688 1.69775 1.27057 0.84779 0.90085 0.99053 1.20055 0.88132 0.94286 0.99429 1.21865 1.04416 0.99078 0.94523 1.21887 1.04493 0.99281 0.94680 1.70937 1.21646 1.09996 1.17994 1.21412 0.89850 0.95280 1.15692 1.16624 0.84446 0.82919 0.76635 1.90701 1.16289 1.83710 1.54122 1.48220 1.07704 1.06370 1.69879 1.22841 0.78032 0.99948 1.00691 1.21520 0.95355 0.90457 0.86933 0.90771 1.42557 1.18068 1.62126 1.13354 1.19556 0.94163 1.25573 0.97439 0.90494 1.25470 1.01599 1.01444 0.97831 1.69812 1.37606 1.42754 1.11791 0.85291 0.80295 0.77647 0.77019 1.20776 1.22593 1.20078 1.22019 0.92993 0.95748 0.96998 1.21623 1.03190 1.01762 0.91262 1.21499 1.02131 0.93464 1.00464 1.22386 0.98802 0.78755 1.00131 0.88152 0.88165 0.87118 0.86926 0.88312 0.92642 0.91538 0.93690 0.88192 0.91406 0.91266 0.93661 0.79106 0.94228 0.91034 0.90625 0.93332 0.94334 0.90655 0.92281 0.93326 0.89624 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.07 -1.44 9.88 71.24 0.70 -0.74 16 2 C 0.04 1.21 7.44 25.19 0.19 1.40 16 3 O -0.19 -4.99 10.73 0.41 0.00 -4.98 16 4 C 0.20 5.47 6.81 88.39 0.60 6.07 16 5 C 0.00 0.01 3.39 -11.54 -0.04 -0.03 16 6 C -0.14 -1.88 9.18 71.98 0.66 -1.22 16 7 C -0.15 -2.31 9.18 71.98 0.66 -1.65 16 8 N -0.48 -16.39 8.84 -293.03 -2.59 -18.98 16 9 C -0.10 -3.64 6.83 40.41 0.28 -3.36 16 10 C 0.60 23.33 7.85 86.66 0.68 24.01 16 11 O -0.57 -22.52 15.06 -4.07 -0.06 -22.59 16 12 N -0.59 -22.63 3.31 -815.21 -2.70 -25.33 16 13 C 0.11 4.34 4.95 86.73 0.43 4.77 16 14 C 0.17 6.60 2.85 46.18 0.13 6.73 16 15 H 0.07 2.84 8.02 -2.39 -0.02 2.82 16 16 N -0.72 -35.68 4.62 -317.34 -1.47 -37.14 16 17 C -0.24 -12.84 9.98 84.03 0.84 -12.00 16 18 H 0.08 4.01 7.83 -2.91 -0.02 3.99 16 19 C -0.07 -4.06 5.50 84.86 0.47 -3.59 16 20 N -0.97 -59.28 13.06 21.65 0.28 -59.00 16 21 Si 0.97 46.02 29.55 68.60 2.03 48.05 16 22 H -0.28 -13.00 7.11 99.48 0.71 -12.29 16 23 H -0.30 -14.49 7.11 99.48 0.71 -13.79 16 24 H -0.27 -12.45 7.11 99.48 0.71 -11.74 16 25 C -0.08 -2.45 0.84 -50.71 -0.04 -2.49 16 26 C -0.12 -3.06 8.58 71.98 0.62 -2.44 16 27 C -0.12 -3.77 8.22 71.98 0.59 -3.18 16 28 C 0.12 4.29 5.83 86.93 0.51 4.80 16 29 H 0.10 1.90 8.14 -2.39 -0.02 1.88 16 30 H 0.10 2.37 6.48 -2.39 -0.02 2.36 16 31 H 0.11 1.54 8.14 -2.38 -0.02 1.52 16 32 H 0.11 2.23 8.14 -2.38 -0.02 2.21 16 33 H 0.10 0.84 8.14 -2.38 -0.02 0.82 16 34 H 0.05 0.82 8.14 -2.39 -0.02 0.80 16 35 H 0.07 0.84 8.14 -2.39 -0.02 0.82 16 36 H 0.04 0.89 8.14 -2.39 -0.02 0.87 16 37 H 0.10 1.07 8.14 -2.39 -0.02 1.05 16 38 H 0.07 1.00 8.14 -2.39 -0.02 0.98 16 39 H 0.07 2.56 7.64 -2.38 -0.02 2.54 16 40 H 0.04 2.12 7.65 -2.39 -0.02 2.10 16 41 H 0.38 20.14 6.12 -92.71 -0.57 19.57 16 42 H 0.25 14.92 8.31 -92.71 -0.77 14.15 16 43 H 0.07 1.65 8.14 -2.39 -0.02 1.64 16 44 H 0.07 1.62 8.14 -2.39 -0.02 1.60 16 45 H 0.05 1.28 7.91 -2.39 -0.02 1.26 16 46 H 0.04 1.47 6.39 -2.39 -0.02 1.46 16 47 H 0.07 1.94 8.14 -2.39 -0.02 1.92 16 48 H 0.06 1.90 8.14 -2.38 -0.02 1.89 16 49 H 0.05 1.93 7.99 -2.39 -0.02 1.91 16 50 H 0.09 2.77 7.95 -2.39 -0.02 2.75 16 Total: -1.00 -70.96 401.90 3.13 -67.82 By element: Atomic # 1 Polarization: 34.70 SS G_CDS: 0.36 Total: 35.07 kcal Atomic # 6 Polarization: 9.81 SS G_CDS: 7.27 Total: 17.08 kcal Atomic # 7 Polarization: -133.98 SS G_CDS: -6.47 Total: -140.45 kcal Atomic # 8 Polarization: -27.51 SS G_CDS: -0.06 Total: -27.57 kcal Atomic # 14 Polarization: 46.02 SS G_CDS: 2.03 Total: 48.05 kcal Total: -70.96 3.13 -67.82 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000995814048.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 38.209 kcal (2) G-P(sol) polarization free energy of solvation -70.956 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -32.747 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.135 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -67.821 kcal (6) G-S(sol) free energy of system = (1) + (5) -29.612 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.14 seconds