Wall clock time and date at job start Tue Mar 31 2020 18:59:38 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 C 1.52998 * 109.47660 * 2 1 4 4 C 1.53001 * 109.46944 * 239.99610 * 2 1 3 5 5 C 1.50706 * 109.46883 * 120.00453 * 2 1 3 6 6 C 1.35311 * 126.66956 * 59.70712 * 5 2 1 7 7 C 1.42271 * 103.92317 * 179.90961 * 6 5 2 8 8 C 1.48332 * 126.93596 * 180.12721 * 7 6 5 9 9 O 1.21487 * 120.00126 * 0.24723 * 8 7 6 10 10 N 1.34782 * 119.99525 * 180.25144 * 8 7 6 11 11 C 1.47023 * 125.65028 * 0.02562 * 10 8 7 12 12 C 1.54316 * 107.27009 * 181.02623 * 11 10 8 13 13 H 1.09000 * 110.72352 * 140.55523 * 12 11 10 14 14 N 1.46505 * 110.71910 * 263.64925 * 12 11 10 15 15 C 1.36941 * 120.00189 * 273.54722 * 14 12 11 16 16 H 1.08000 * 119.99388 * 359.97438 * 15 14 12 17 17 C 1.38805 * 120.00173 * 179.97438 * 15 14 12 18 18 N 1.31613 * 119.99980 * 180.02562 * 17 15 14 19 19 Si 1.86807 * 120.00087 * 359.97438 * 17 15 14 20 20 H 1.48497 * 109.47079 * 89.99999 * 19 17 15 21 21 H 1.48495 * 109.47060 * 210.00117 * 19 17 15 22 22 H 1.48503 * 109.46859 * 330.00099 * 19 17 15 23 23 C 1.55153 * 102.94686 * 22.18831 * 12 11 10 24 24 C 1.52999 * 111.00227 * 82.57424 * 23 12 11 25 25 C 1.52997 * 111.00929 * 206.38752 * 23 12 11 26 26 C 1.47427 * 125.64455 * 179.71625 * 10 8 7 27 27 N 1.30986 * 106.12230 * 0.35463 * 7 6 5 28 28 O 1.20904 * 111.43783 * 359.77467 * 27 7 6 29 29 H 1.09006 * 109.46625 * 300.00151 * 1 2 3 30 30 H 1.09002 * 109.46941 * 59.99686 * 1 2 3 31 31 H 1.08995 * 109.47425 * 179.97438 * 1 2 3 32 32 H 1.08991 * 109.47213 * 179.97438 * 3 2 1 33 33 H 1.09002 * 109.47199 * 300.00155 * 3 2 1 34 34 H 1.09002 * 109.46782 * 60.00058 * 3 2 1 35 35 H 1.08995 * 109.47427 * 300.00449 * 4 2 1 36 36 H 1.09002 * 109.46727 * 60.00573 * 4 2 1 37 37 H 1.09004 * 109.47042 * 180.02562 * 4 2 1 38 38 H 1.08004 * 128.03363 * 359.97438 * 6 5 2 39 39 H 1.09003 * 109.87845 * 300.44237 * 11 10 8 40 40 H 1.08996 * 109.88211 * 61.44840 * 11 10 8 41 41 H 0.97000 * 120.00071 * 93.54574 * 14 12 11 42 42 H 0.97009 * 119.99997 * 179.97438 * 18 17 15 43 43 H 1.08995 * 109.47236 * 60.00149 * 24 23 12 44 44 H 1.09005 * 109.46997 * 180.02562 * 24 23 12 45 45 H 1.09003 * 109.47085 * 300.00034 * 24 23 12 46 46 H 1.09002 * 109.47104 * 59.99809 * 25 23 12 47 47 H 1.08997 * 109.47318 * 179.97438 * 25 23 12 48 48 H 1.09001 * 109.47190 * 299.99902 * 25 23 12 49 49 H 1.08993 * 110.36332 * 274.74382 * 26 10 8 50 50 H 1.09002 * 110.36793 * 37.06904 * 26 10 8 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0401 1.4424 0.0000 4 6 2.0399 -0.7213 -1.2492 5 6 2.0323 -0.7105 1.2305 6 6 1.7854 -1.9943 1.5796 7 6 2.4861 -2.1560 2.8072 8 6 2.5597 -3.3836 3.6366 9 8 1.9845 -4.3926 3.2805 10 7 3.2647 -3.3794 4.7854 11 6 4.0047 -2.2328 5.3324 12 6 4.6733 -2.7017 6.6418 13 1 5.6749 -2.2819 6.7353 14 7 3.8524 -2.3418 7.8007 15 6 3.9870 -1.1076 8.3785 16 1 4.6987 -0.3997 7.9801 17 6 3.2088 -0.7665 9.4761 18 7 3.3379 0.4199 10.0311 19 14 1.9773 -1.9908 10.1647 20 1 2.6353 -2.8238 11.2031 21 1 0.8355 -1.2580 10.7683 22 1 1.4823 -2.8637 9.0701 23 6 4.7378 -4.2420 6.4671 24 6 5.9542 -4.6488 5.6330 25 6 4.7461 -4.9482 7.8243 26 6 3.4161 -4.5220 5.7046 27 7 3.0491 -1.0005 3.0596 28 8 2.8054 -0.1919 2.1944 29 1 -0.3633 0.5139 0.8900 30 1 -0.3633 0.5139 -0.8900 31 1 -0.3634 -1.0276 -0.0005 32 1 3.1300 1.4423 0.0005 33 1 1.6768 1.9563 -0.8900 34 1 1.6768 1.9562 0.8900 35 1 1.6766 -1.7489 -1.2492 36 1 1.6766 -0.2075 -2.1392 37 1 3.1300 -0.7218 -1.2490 38 1 1.1947 -2.7264 1.0490 39 1 4.7661 -1.9102 4.6223 40 1 3.3177 -1.4119 5.5375 41 1 3.2134 -2.9778 8.1587 42 1 2.7938 0.6585 10.7980 43 1 6.8644 -4.3153 6.1314 44 1 5.9749 -5.7333 5.5257 45 1 5.8897 -4.1876 4.6475 46 1 3.8372 -4.6962 8.3706 47 1 4.7913 -6.0266 7.6725 48 1 5.6155 -4.6248 8.3968 49 1 2.5767 -4.5642 6.3986 50 1 3.4924 -5.4531 5.1431 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000996034725.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 18:59:38 Heat of formation + Delta-G solvation = 36.525686 kcal Electronic energy + Delta-G solvation = -30293.565135 eV Core-core repulsion = 26324.528368 eV Total energy + Delta-G solvation = -3969.036767 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 335.200 amu Computer time = 1.03 seconds Orbital eigenvalues (eV) -45.09018 -40.09693 -38.05876 -37.63456 -34.21752 -33.91970 -33.16725 -31.10273 -30.93933 -28.30713 -27.81137 -27.67609 -27.00387 -26.79274 -24.23465 -23.35302 -23.23836 -21.57637 -20.89091 -19.16068 -18.50155 -17.78014 -17.61982 -17.22636 -16.57471 -15.84435 -15.33852 -14.92862 -14.72925 -14.45854 -14.41953 -14.31243 -13.85893 -13.77289 -13.69221 -13.01563 -12.80772 -12.75046 -12.66782 -12.52507 -12.27314 -12.12962 -12.04593 -11.87171 -11.79908 -11.70253 -11.45767 -11.44289 -11.27427 -11.16210 -11.01536 -10.67216 -10.57767 -10.42014 -10.31528 -10.13301 -9.92022 -9.61237 -9.50452 -9.03174 -8.41536 -7.37138 -5.83079 -3.19973 1.18918 1.63812 2.79543 3.00105 3.28147 3.32810 3.35262 3.41348 3.98979 4.16007 4.48327 4.51321 4.53170 4.59664 4.77251 4.93523 4.95198 5.02703 5.15282 5.17640 5.22816 5.29942 5.33907 5.39639 5.48060 5.50156 5.51816 5.53819 5.60668 5.66083 5.72272 5.76338 5.81827 5.83752 5.89095 5.95081 5.95778 6.03644 6.07764 6.14173 6.20774 6.29238 6.46068 6.49648 6.65338 6.70539 7.62557 7.91656 7.98682 8.22677 8.35558 9.12492 9.84827 10.03294 11.34766 Molecular weight = 335.20amu Principal moments of inertia in cm(-1) A = 0.012404 B = 0.003483 C = 0.003028 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2256.781783 B = 8036.897001 C = 9243.982117 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.142 4.142 2 C 0.017 3.983 3 C -0.148 4.148 4 C -0.141 4.141 5 C -0.028 4.028 6 C -0.180 4.180 7 C -0.021 4.021 8 C 0.607 3.393 9 O -0.540 6.540 10 N -0.591 5.591 11 C 0.077 3.923 12 C 0.184 3.816 13 H 0.080 0.920 14 N -0.737 5.737 15 C -0.248 4.248 16 H 0.093 0.907 17 C 0.011 3.989 18 N -0.929 5.929 19 Si 0.878 3.122 20 H -0.282 1.282 21 H -0.290 1.290 22 H -0.278 1.278 23 C -0.092 4.092 24 C -0.129 4.129 25 C -0.127 4.127 26 C 0.119 3.881 27 N -0.316 5.316 28 O 0.127 5.873 29 H 0.063 0.937 30 H 0.070 0.930 31 H 0.063 0.937 32 H 0.064 0.936 33 H 0.067 0.933 34 H 0.066 0.934 35 H 0.062 0.938 36 H 0.070 0.930 37 H 0.062 0.938 38 H 0.176 0.824 39 H 0.063 0.937 40 H 0.084 0.916 41 H 0.363 0.637 42 H 0.260 0.740 43 H 0.062 0.938 44 H 0.055 0.945 45 H 0.053 0.947 46 H 0.058 0.942 47 H 0.050 0.950 48 H 0.067 0.933 49 H 0.069 0.931 50 H 0.076 0.924 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.814 -4.486 -21.530 22.008 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.200 4.200 2 C 0.015 3.985 3 C -0.206 4.206 4 C -0.198 4.198 5 C -0.091 4.091 6 C -0.202 4.202 7 C -0.180 4.180 8 C 0.394 3.606 9 O -0.417 6.417 10 N -0.322 5.322 11 C -0.048 4.048 12 C 0.073 3.927 13 H 0.098 0.902 14 N -0.379 5.379 15 C -0.377 4.377 16 H 0.111 0.889 17 C -0.185 4.185 18 N -0.576 5.576 19 Si 0.708 3.292 20 H -0.208 1.208 21 H -0.216 1.216 22 H -0.204 1.204 23 C -0.093 4.093 24 C -0.187 4.187 25 C -0.185 4.185 26 C -0.003 4.003 27 N -0.015 5.015 28 O 0.050 5.950 29 H 0.082 0.918 30 H 0.089 0.911 31 H 0.082 0.918 32 H 0.083 0.917 33 H 0.086 0.914 34 H 0.085 0.915 35 H 0.082 0.918 36 H 0.089 0.911 37 H 0.081 0.919 38 H 0.194 0.806 39 H 0.081 0.919 40 H 0.103 0.897 41 H 0.197 0.803 42 H 0.070 0.930 43 H 0.081 0.919 44 H 0.074 0.926 45 H 0.072 0.928 46 H 0.077 0.923 47 H 0.069 0.931 48 H 0.086 0.914 49 H 0.088 0.912 50 H 0.094 0.906 Dipole moment (debyes) X Y Z Total from point charges -0.312 -4.375 -20.621 21.082 hybrid contribution -1.549 -1.108 0.170 1.912 sum -1.860 -5.483 -20.451 21.255 Atomic orbital electron populations 1.21955 0.92098 1.02951 1.02967 1.19172 0.96064 0.95374 0.87858 1.21915 1.02009 0.93644 1.03003 1.21943 1.01804 1.00583 0.95502 1.24418 0.97027 0.93584 0.94118 1.22270 1.04681 0.96878 0.96403 1.23389 1.02269 0.94482 0.97868 1.16484 0.79210 0.85254 0.79692 1.90753 1.46581 1.32706 1.71688 1.48286 1.48646 1.15089 1.20220 1.23325 0.96104 0.88530 0.96864 1.21216 0.94987 0.90674 0.85840 0.90175 1.42809 1.45539 1.16422 1.33138 1.19050 1.19066 0.90464 1.09151 0.88924 1.24632 0.99346 0.96356 0.98205 1.69691 1.43266 1.19707 1.24956 0.86659 0.82031 0.81343 0.79151 1.20818 1.21628 1.20449 1.22100 0.94065 0.97285 0.95872 1.21667 0.96766 1.00831 0.99392 1.21596 1.03164 0.98601 0.95090 1.22403 0.97466 0.88964 0.91428 1.74421 1.17886 1.00091 1.09148 1.84832 1.50818 1.35415 1.23950 0.91781 0.91064 0.91830 0.91653 0.91389 0.91536 0.91844 0.91072 0.91910 0.80649 0.91876 0.89726 0.80259 0.92963 0.91922 0.92602 0.92766 0.92259 0.93060 0.91441 0.91237 0.90561 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -0.96 8.36 37.16 0.31 -0.65 16 2 C 0.02 0.13 0.94 -155.66 -0.15 -0.02 16 3 C -0.15 -1.03 8.07 37.16 0.30 -0.73 16 4 C -0.14 -0.87 8.36 37.16 0.31 -0.56 16 5 C -0.03 -0.32 5.76 -35.35 -0.20 -0.52 16 6 C -0.18 -2.33 10.40 -39.08 -0.41 -2.73 16 7 C -0.02 -0.35 7.03 -82.53 -0.58 -0.93 16 8 C 0.61 11.08 7.88 -12.10 -0.10 10.99 16 9 O -0.54 -10.69 17.21 5.38 0.09 -10.60 16 10 N -0.59 -10.50 3.31 -171.31 -0.57 -11.06 16 11 C 0.08 1.42 4.98 -3.07 -0.02 1.40 16 12 C 0.18 3.42 2.85 -66.10 -0.19 3.23 16 13 H 0.08 1.49 8.02 -51.93 -0.42 1.07 16 14 N -0.74 -16.70 4.42 -51.66 -0.23 -16.92 16 15 C -0.25 -6.74 10.46 -15.06 -0.16 -6.90 16 16 H 0.09 2.70 8.06 -52.49 -0.42 2.27 16 17 C 0.01 0.31 5.50 -17.44 -0.10 0.22 16 18 N -0.93 -28.72 13.97 55.49 0.78 -27.95 16 19 Si 0.88 21.91 27.74 -169.99 -4.71 17.20 16 20 H -0.28 -6.90 7.11 56.52 0.40 -6.50 16 21 H -0.29 -7.40 7.11 56.52 0.40 -7.00 16 22 H -0.28 -6.65 6.52 56.52 0.37 -6.28 16 23 C -0.09 -1.39 0.84 -152.24 -0.13 -1.52 16 24 C -0.13 -1.64 8.58 37.16 0.32 -1.32 16 25 C -0.13 -1.85 8.22 37.16 0.31 -1.55 16 26 C 0.12 1.95 5.83 -2.41 -0.01 1.93 16 27 N -0.32 -5.19 9.73 33.29 0.32 -4.87 16 28 O 0.13 1.76 10.65 17.24 0.18 1.95 16 29 H 0.06 0.49 8.14 -51.93 -0.42 0.06 16 30 H 0.07 0.35 8.14 -51.93 -0.42 -0.07 16 31 H 0.06 0.43 8.03 -51.93 -0.42 0.01 16 32 H 0.06 0.47 8.14 -51.93 -0.42 0.05 16 33 H 0.07 0.35 8.14 -51.93 -0.42 -0.07 16 34 H 0.07 0.51 8.14 -51.93 -0.42 0.09 16 35 H 0.06 0.39 8.03 -51.93 -0.42 -0.03 16 36 H 0.07 0.32 8.14 -51.93 -0.42 -0.10 16 37 H 0.06 0.41 8.14 -51.93 -0.42 -0.01 16 38 H 0.18 1.95 8.06 -52.48 -0.42 1.52 16 39 H 0.06 1.09 7.69 -51.93 -0.40 0.69 16 40 H 0.08 1.82 7.69 -51.93 -0.40 1.42 16 41 H 0.36 8.22 3.98 -40.82 -0.16 8.06 16 42 H 0.26 7.70 8.31 -40.82 -0.34 7.36 16 43 H 0.06 0.75 8.14 -51.93 -0.42 0.32 16 44 H 0.05 0.63 8.14 -51.93 -0.42 0.20 16 45 H 0.05 0.71 7.91 -51.93 -0.41 0.30 16 46 H 0.06 0.96 6.39 -51.93 -0.33 0.63 16 47 H 0.05 0.62 8.14 -51.93 -0.42 0.20 16 48 H 0.07 0.99 8.14 -51.93 -0.42 0.57 16 49 H 0.07 1.20 7.99 -51.93 -0.41 0.79 16 50 H 0.08 1.16 7.95 -51.93 -0.41 0.75 16 LS Contribution 399.50 15.07 6.02 6.02 Total: -1.00 -32.54 399.50 -7.05 -39.59 By element: Atomic # 1 Polarization: 14.75 SS G_CDS: -8.45 Total: 6.30 kcal Atomic # 6 Polarization: 0.83 SS G_CDS: -0.49 Total: 0.35 kcal Atomic # 7 Polarization: -61.10 SS G_CDS: 0.30 Total: -60.80 kcal Atomic # 8 Polarization: -8.93 SS G_CDS: 0.28 Total: -8.65 kcal Atomic # 14 Polarization: 21.91 SS G_CDS: -4.71 Total: 17.20 kcal Total LS contribution 6.02 Total: 6.02 kcal Total: -32.54 -7.05 -39.59 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000996034725.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 76.111 kcal (2) G-P(sol) polarization free energy of solvation -32.539 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 43.572 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.047 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.586 kcal (6) G-S(sol) free energy of system = (1) + (5) 36.526 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.03 seconds