Wall clock time and date at job start Tue Mar 31 2020 18:59:40 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52992 * 1 3 3 C 1.52998 * 109.47142 * 2 1 4 4 C 1.53006 * 109.46958 * 240.00126 * 2 1 3 5 5 C 1.50696 * 109.47343 * 120.00463 * 2 1 3 6 6 C 1.35313 * 126.66890 * 60.28039 * 5 2 1 7 7 C 1.42278 * 103.92529 * 180.09009 * 6 5 2 8 8 C 1.48322 * 126.94074 * 179.91364 * 7 6 5 9 9 O 1.21497 * 119.99978 * 359.70507 * 8 7 6 10 10 N 1.34780 * 120.00175 * 179.71197 * 8 7 6 11 11 C 1.47026 * 125.64391 * 359.97277 * 10 8 7 12 12 C 1.54330 * 107.26840 * 178.97562 * 11 10 8 13 13 H 1.08991 * 110.72004 * 219.44241 * 12 11 10 14 14 N 1.46499 * 110.71556 * 96.16892 * 12 11 10 15 15 C 1.36946 * 119.99920 * 86.45572 * 14 12 11 16 16 H 1.08000 * 119.99914 * 359.97438 * 15 14 12 17 17 C 1.38808 * 120.00049 * 179.97438 * 15 14 12 18 18 N 1.31629 * 120.00102 * 0.02562 * 17 15 14 19 19 Si 1.86795 * 120.00271 * 180.02562 * 17 15 14 20 20 H 1.48499 * 109.47291 * 89.99935 * 19 17 15 21 21 H 1.48495 * 109.47407 * 210.00519 * 19 17 15 22 22 H 1.48508 * 109.46843 * 330.00211 * 19 17 15 23 23 C 1.55155 * 102.94292 * 337.81024 * 12 11 10 24 24 C 1.53002 * 111.00164 * 277.42636 * 23 12 11 25 25 C 1.52994 * 111.03735 * 153.59095 * 23 12 11 26 26 C 1.47420 * 125.65180 * 180.02562 * 10 8 7 27 27 N 1.30994 * 106.11825 * 359.65054 * 7 6 5 28 28 O 1.20902 * 111.43789 * 0.22604 * 27 7 6 29 29 H 1.09003 * 109.46989 * 299.99605 * 1 2 3 30 30 H 1.08994 * 109.47649 * 60.00054 * 1 2 3 31 31 H 1.08999 * 109.47213 * 179.97438 * 1 2 3 32 32 H 1.08997 * 109.47027 * 180.02562 * 3 2 1 33 33 H 1.09003 * 109.47384 * 299.99888 * 3 2 1 34 34 H 1.08995 * 109.46998 * 60.00603 * 3 2 1 35 35 H 1.08999 * 109.47081 * 299.99986 * 4 2 1 36 36 H 1.09003 * 109.46810 * 60.00021 * 4 2 1 37 37 H 1.09002 * 109.46845 * 179.97438 * 4 2 1 38 38 H 1.08003 * 128.04264 * 359.97438 * 6 5 2 39 39 H 1.08998 * 109.88351 * 298.39161 * 11 10 8 40 40 H 1.08998 * 109.88379 * 59.55951 * 11 10 8 41 41 H 0.96998 * 120.00239 * 266.45268 * 14 12 11 42 42 H 0.96997 * 119.99978 * 179.97438 * 18 17 15 43 43 H 1.08996 * 109.47442 * 173.65127 * 24 23 12 44 44 H 1.09002 * 109.47243 * 293.64892 * 24 23 12 45 45 H 1.09001 * 109.47331 * 53.65100 * 24 23 12 46 46 H 1.09002 * 109.47359 * 306.32478 * 25 23 12 47 47 H 1.08995 * 109.47577 * 66.32915 * 25 23 12 48 48 H 1.09006 * 109.47268 * 186.32862 * 25 23 12 49 49 H 1.08997 * 110.36858 * 322.93289 * 26 10 8 50 50 H 1.08999 * 110.36307 * 85.25503 * 26 10 8 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 6 2.0399 1.4425 0.0000 4 6 2.0399 -0.7213 -1.2493 5 6 2.0323 -0.7105 1.2304 6 6 1.7944 -1.9974 1.5741 7 6 2.4871 -2.1563 2.8066 8 6 2.5619 -3.3841 3.6354 9 8 1.9869 -4.3934 3.2791 10 7 3.2674 -3.3802 4.7837 11 6 4.0081 -2.2338 5.3303 12 6 4.6343 -2.6876 6.6659 13 1 4.5750 -1.8929 7.4093 14 7 6.0223 -3.1130 6.4693 15 6 7.0335 -2.1903 6.5094 16 1 6.8076 -1.1490 6.6855 17 6 8.3487 -2.5935 6.3237 18 7 8.6240 -3.8625 6.1086 19 14 9.7280 -1.3350 6.3790 20 1 10.2254 -1.2066 7.7723 21 1 10.8372 -1.7772 5.4962 22 1 9.2179 -0.0207 5.9124 23 6 3.7444 -3.8906 7.0759 24 6 2.4665 -3.4157 7.7705 25 6 4.5170 -4.8678 7.9641 26 6 3.4253 -4.5249 5.6991 27 7 3.0504 -1.0008 3.0588 28 8 2.8062 -0.1921 2.1939 29 1 -0.3633 0.5138 0.8900 30 1 -0.3634 0.5138 -0.8899 31 1 -0.3633 -1.0276 -0.0005 32 1 3.1299 1.4425 -0.0005 33 1 1.6766 1.9564 -0.8900 34 1 1.6767 1.9562 0.8900 35 1 1.6766 -1.7489 -1.2493 36 1 1.6765 -0.2073 -2.1393 37 1 3.1299 -0.7208 -1.2495 38 1 1.2122 -2.7327 1.0384 39 1 4.7929 -1.9342 4.6358 40 1 3.3266 -1.4011 5.5044 41 1 6.2252 -4.0482 6.3108 42 1 9.5430 -4.1442 5.9784 43 1 1.8101 -4.2680 7.9461 44 1 2.7217 -2.9514 8.7231 45 1 1.9571 -2.6893 7.1372 46 1 5.4424 -5.1575 7.4662 47 1 4.7506 -4.3882 8.9146 48 1 3.9085 -5.7541 8.1442 49 1 2.5004 -5.0993 5.7513 50 1 4.2493 -5.1599 5.3738 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000996034727.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 18:59:40 Heat of formation + Delta-G solvation = 14.673589 kcal Electronic energy + Delta-G solvation = -30216.152760 eV Core-core repulsion = 26246.168415 eV Total energy + Delta-G solvation = -3969.984345 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 335.200 amu Computer time = 1.18 seconds Orbital eigenvalues (eV) -46.23205 -41.46290 -39.44245 -38.29306 -35.84247 -35.26301 -34.46652 -32.66922 -31.96366 -29.57905 -28.56078 -28.16669 -28.09029 -27.91359 -25.91351 -24.96986 -24.26261 -23.12181 -21.99657 -20.41277 -19.62813 -19.16389 -18.93542 -18.31979 -17.73013 -17.31226 -16.71306 -16.49248 -15.89546 -15.69761 -15.50494 -15.10389 -15.02093 -14.95761 -14.64257 -14.61266 -14.37640 -13.80844 -13.59500 -13.33239 -13.24601 -13.20737 -13.15254 -12.85313 -12.82500 -12.74282 -12.65166 -12.57114 -12.25631 -12.21290 -12.09385 -12.02673 -11.93571 -11.79456 -11.61090 -11.53740 -11.49336 -11.30346 -10.97813 -10.48883 -9.84362 -9.06343 -7.96051 -5.24893 0.00348 0.59805 1.46423 1.47307 1.55477 1.61501 1.92530 1.97093 2.54048 2.76388 3.21618 3.34110 3.44797 3.72657 3.78956 3.80903 3.90330 3.93067 3.95586 4.00128 4.20477 4.24142 4.38265 4.41053 4.52465 4.54913 4.71761 4.77823 4.78652 4.80197 4.84242 4.86743 4.88722 4.94302 5.00266 5.00520 5.01682 5.04553 5.09934 5.15117 5.25718 5.28605 5.34190 5.39203 5.42139 5.50781 5.56590 6.23283 6.25168 6.70149 7.02275 7.32786 8.04651 8.29181 9.26952 Molecular weight = 335.20amu Principal moments of inertia in cm(-1) A = 0.010893 B = 0.003545 C = 0.002905 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2569.947996 B = 7895.750223 C = 9637.537256 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.139 4.139 2 C 0.018 3.982 3 C -0.149 4.149 4 C -0.142 4.142 5 C -0.010 4.010 6 C -0.185 4.185 7 C -0.046 4.046 8 C 0.601 3.399 9 O -0.562 6.562 10 N -0.591 5.591 11 C 0.096 3.904 12 C 0.171 3.829 13 H 0.078 0.922 14 N -0.721 5.721 15 C -0.239 4.239 16 H 0.077 0.923 17 C -0.070 4.070 18 N -0.967 5.967 19 Si 0.968 3.032 20 H -0.285 1.285 21 H -0.300 1.300 22 H -0.271 1.271 23 C -0.075 4.075 24 C -0.123 4.123 25 C -0.121 4.121 26 C 0.119 3.881 27 N -0.343 5.343 28 O 0.128 5.872 29 H 0.057 0.943 30 H 0.095 0.905 31 H 0.063 0.937 32 H 0.054 0.946 33 H 0.093 0.907 34 H 0.061 0.939 35 H 0.063 0.937 36 H 0.097 0.903 37 H 0.051 0.949 38 H 0.192 0.808 39 H 0.047 0.953 40 H 0.072 0.928 41 H 0.377 0.623 42 H 0.250 0.750 43 H 0.074 0.926 44 H 0.073 0.927 45 H 0.048 0.952 46 H 0.040 0.960 47 H 0.062 0.938 48 H 0.074 0.926 49 H 0.088 0.912 50 H 0.052 0.948 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -19.618 8.269 -10.204 23.608 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.197 4.197 2 C 0.016 3.984 3 C -0.206 4.206 4 C -0.200 4.200 5 C -0.073 4.073 6 C -0.208 4.208 7 C -0.203 4.203 8 C 0.389 3.611 9 O -0.441 6.441 10 N -0.322 5.322 11 C -0.030 4.030 12 C 0.060 3.940 13 H 0.096 0.904 14 N -0.361 5.361 15 C -0.371 4.371 16 H 0.095 0.905 17 C -0.262 4.262 18 N -0.617 5.617 19 Si 0.798 3.202 20 H -0.211 1.211 21 H -0.227 1.227 22 H -0.196 1.196 23 C -0.077 4.077 24 C -0.180 4.180 25 C -0.179 4.179 26 C -0.002 4.002 27 N -0.042 5.042 28 O 0.050 5.950 29 H 0.077 0.923 30 H 0.114 0.886 31 H 0.082 0.918 32 H 0.074 0.926 33 H 0.111 0.889 34 H 0.080 0.920 35 H 0.082 0.918 36 H 0.115 0.885 37 H 0.070 0.930 38 H 0.210 0.790 39 H 0.066 0.934 40 H 0.090 0.910 41 H 0.211 0.789 42 H 0.059 0.941 43 H 0.093 0.907 44 H 0.092 0.908 45 H 0.067 0.933 46 H 0.059 0.941 47 H 0.081 0.919 48 H 0.093 0.907 49 H 0.106 0.894 50 H 0.071 0.929 Dipole moment (debyes) X Y Z Total from point charges -19.055 8.282 -9.361 22.789 hybrid contribution 1.107 -0.512 -0.524 1.328 sum -17.949 7.769 -9.885 21.914 Atomic orbital electron populations 1.21964 0.90483 1.03322 1.03882 1.19455 0.97127 0.95533 0.86264 1.21945 1.01517 0.93167 1.03971 1.21994 1.01288 1.00891 0.95798 1.25174 0.94789 0.93252 0.94128 1.22491 1.05134 0.97785 0.95373 1.23406 1.03622 0.94083 0.99239 1.16810 0.78847 0.85759 0.79729 1.90721 1.48178 1.33617 1.71584 1.48333 1.47820 1.15175 1.20854 1.23022 0.94357 0.87638 0.97977 1.21460 0.84013 0.95869 0.92642 0.90417 1.42592 1.00589 1.07666 1.85236 1.19596 0.87041 0.90885 1.39587 0.90473 1.25480 0.99621 0.97744 1.03379 1.69814 1.18592 1.15781 1.57538 0.85219 0.79134 0.78703 0.77191 1.21148 1.22655 1.19638 1.21985 0.96666 0.95644 0.93358 1.21653 0.94542 1.01650 1.00186 1.21532 0.99100 0.98326 0.98895 1.22414 1.01318 0.88073 0.88419 1.74395 1.18104 1.00779 1.10950 1.84781 1.50719 1.35060 1.24406 0.92348 0.88586 0.91805 0.92646 0.88865 0.92029 0.91826 0.88467 0.92988 0.79041 0.93424 0.90998 0.78923 0.94120 0.90664 0.90817 0.93254 0.94106 0.91913 0.90703 0.89378 0.92946 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.35 8.36 71.98 0.60 -0.75 16 2 C 0.02 0.23 0.94 -52.93 -0.05 0.18 16 3 C -0.15 -1.74 8.07 71.98 0.58 -1.16 16 4 C -0.14 -1.62 8.36 71.98 0.60 -1.01 16 5 C -0.01 -0.22 5.76 25.01 0.14 -0.08 16 6 C -0.19 -4.81 10.40 22.60 0.24 -4.58 16 7 C -0.05 -1.57 7.03 42.96 0.30 -1.26 16 8 C 0.60 23.12 7.88 86.93 0.68 23.80 16 9 O -0.56 -23.28 17.21 -3.71 -0.06 -23.35 16 10 N -0.59 -22.24 3.31 -814.63 -2.70 -24.93 16 11 C 0.10 3.69 4.92 86.73 0.43 4.12 16 12 C 0.17 6.62 2.87 46.18 0.13 6.75 16 13 H 0.08 2.92 8.03 -2.39 -0.02 2.90 16 14 N -0.72 -35.33 4.59 -317.33 -1.46 -36.79 16 15 C -0.24 -13.02 9.98 84.03 0.84 -12.18 16 16 H 0.08 4.03 7.83 -2.91 -0.02 4.01 16 17 C -0.07 -3.97 5.50 84.86 0.47 -3.50 16 18 N -0.97 -58.87 13.06 21.65 0.28 -58.59 16 19 Si 0.97 46.15 29.55 68.60 2.03 48.18 16 20 H -0.28 -13.23 7.11 99.48 0.71 -12.53 16 21 H -0.30 -14.56 7.11 99.48 0.71 -13.85 16 22 H -0.27 -12.34 7.11 99.48 0.71 -11.63 16 23 C -0.08 -2.37 0.83 -50.79 -0.04 -2.42 16 24 C -0.12 -3.04 8.60 71.98 0.62 -2.42 16 25 C -0.12 -3.80 8.35 71.98 0.60 -3.20 16 26 C 0.12 4.16 5.81 86.86 0.51 4.66 16 27 N -0.34 -11.59 9.73 -49.51 -0.48 -12.07 16 28 O 0.13 3.57 10.65 71.86 0.77 4.34 16 29 H 0.06 0.63 8.14 -2.39 -0.02 0.62 16 30 H 0.10 0.49 8.14 -2.39 -0.02 0.47 16 31 H 0.06 0.64 8.04 -2.39 -0.02 0.62 16 32 H 0.05 0.77 8.14 -2.39 -0.02 0.75 16 33 H 0.09 0.63 8.14 -2.39 -0.02 0.61 16 34 H 0.06 0.77 8.14 -2.39 -0.02 0.75 16 35 H 0.06 0.74 8.02 -2.39 -0.02 0.72 16 36 H 0.10 0.62 8.14 -2.39 -0.02 0.60 16 37 H 0.05 0.72 8.14 -2.39 -0.02 0.70 16 38 H 0.19 4.20 8.06 -2.91 -0.02 4.18 16 39 H 0.05 2.17 7.70 -2.39 -0.02 2.16 16 40 H 0.07 2.57 7.69 -2.39 -0.02 2.55 16 41 H 0.38 19.97 6.02 -92.71 -0.56 19.41 16 42 H 0.25 14.87 8.31 -92.71 -0.77 14.10 16 43 H 0.07 1.59 8.14 -2.39 -0.02 1.57 16 44 H 0.07 1.65 8.14 -2.39 -0.02 1.63 16 45 H 0.05 1.26 7.81 -2.39 -0.02 1.24 16 46 H 0.04 1.56 6.17 -2.39 -0.01 1.55 16 47 H 0.06 1.93 8.14 -2.39 -0.02 1.91 16 48 H 0.07 1.91 8.14 -2.38 -0.02 1.89 16 49 H 0.09 2.80 7.95 -2.39 -0.02 2.78 16 50 H 0.05 2.04 8.04 -2.39 -0.02 2.02 16 Total: -1.00 -69.89 402.31 5.39 -64.50 By element: Atomic # 1 Polarization: 31.38 SS G_CDS: 0.37 Total: 31.75 kcal Atomic # 6 Polarization: 0.31 SS G_CDS: 6.65 Total: 6.96 kcal Atomic # 7 Polarization: -128.03 SS G_CDS: -4.35 Total: -132.38 kcal Atomic # 8 Polarization: -19.71 SS G_CDS: 0.70 Total: -19.01 kcal Atomic # 14 Polarization: 46.15 SS G_CDS: 2.03 Total: 48.18 kcal Total: -69.89 5.39 -64.50 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000996034727.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 79.175 kcal (2) G-P(sol) polarization free energy of solvation -69.890 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 9.285 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.388 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -64.502 kcal (6) G-S(sol) free energy of system = (1) + (5) 14.674 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.18 seconds