Wall clock time and date at job start Tue Mar 31 2020 18:59:40
AMSOL-version 7.1
by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers,
I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget,
B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar
Copyright 2004 by Regents of the University of Minnesota.
All rights reserved.
Notice: recipients of this code are asked to comply
with the user agreement in Section 1 of the documentation file.
*******************************************************************************
* 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION
* - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT)
* GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK
* TLIMIT= - A TIME OF 15. SECONDS REQUESTED
* CHARGE - CHARGE ON SYSTEM= -1
* AM1 - THE AM1 HAMILTONIAN TO BE USED
* SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED
* - CHARGE MODEL 2 WILL BE USED (CM2A)
* - THE SOLVENT IS WATER
*******************************************************************************
Atom NO. Chemical Bond length Bond angle Dihedral angle
number (k) symbol (angstroms) (degrees) (degrees)
(I) NA:I NB:NA:I NC:NB:NA:I NA NB NC
1 1 C
2 2 C 1.52992 * 1
3 3 C 1.52998 * 109.47142 * 2 1
4 4 C 1.53006 * 109.46958 * 240.00126 * 2 1 3
5 5 C 1.50696 * 109.47343 * 120.00463 * 2 1 3
6 6 C 1.35313 * 126.66890 * 60.28039 * 5 2 1
7 7 C 1.42278 * 103.92529 * 180.09009 * 6 5 2
8 8 C 1.48322 * 126.94074 * 179.91364 * 7 6 5
9 9 O 1.21497 * 119.99978 * 359.70507 * 8 7 6
10 10 N 1.34780 * 120.00175 * 179.71197 * 8 7 6
11 11 C 1.47026 * 125.64391 * 359.97277 * 10 8 7
12 12 C 1.54330 * 107.26840 * 178.97562 * 11 10 8
13 13 H 1.08991 * 110.72004 * 219.44241 * 12 11 10
14 14 N 1.46499 * 110.71556 * 96.16892 * 12 11 10
15 15 C 1.36946 * 119.99920 * 86.45572 * 14 12 11
16 16 H 1.08000 * 119.99914 * 359.97438 * 15 14 12
17 17 C 1.38808 * 120.00049 * 179.97438 * 15 14 12
18 18 N 1.31629 * 120.00102 * 0.02562 * 17 15 14
19 19 Si 1.86795 * 120.00271 * 180.02562 * 17 15 14
20 20 H 1.48499 * 109.47291 * 89.99935 * 19 17 15
21 21 H 1.48495 * 109.47407 * 210.00519 * 19 17 15
22 22 H 1.48508 * 109.46843 * 330.00211 * 19 17 15
23 23 C 1.55155 * 102.94292 * 337.81024 * 12 11 10
24 24 C 1.53002 * 111.00164 * 277.42636 * 23 12 11
25 25 C 1.52994 * 111.03735 * 153.59095 * 23 12 11
26 26 C 1.47420 * 125.65180 * 180.02562 * 10 8 7
27 27 N 1.30994 * 106.11825 * 359.65054 * 7 6 5
28 28 O 1.20902 * 111.43789 * 0.22604 * 27 7 6
29 29 H 1.09003 * 109.46989 * 299.99605 * 1 2 3
30 30 H 1.08994 * 109.47649 * 60.00054 * 1 2 3
31 31 H 1.08999 * 109.47213 * 179.97438 * 1 2 3
32 32 H 1.08997 * 109.47027 * 180.02562 * 3 2 1
33 33 H 1.09003 * 109.47384 * 299.99888 * 3 2 1
34 34 H 1.08995 * 109.46998 * 60.00603 * 3 2 1
35 35 H 1.08999 * 109.47081 * 299.99986 * 4 2 1
36 36 H 1.09003 * 109.46810 * 60.00021 * 4 2 1
37 37 H 1.09002 * 109.46845 * 179.97438 * 4 2 1
38 38 H 1.08003 * 128.04264 * 359.97438 * 6 5 2
39 39 H 1.08998 * 109.88351 * 298.39161 * 11 10 8
40 40 H 1.08998 * 109.88379 * 59.55951 * 11 10 8
41 41 H 0.96998 * 120.00239 * 266.45268 * 14 12 11
42 42 H 0.96997 * 119.99978 * 179.97438 * 18 17 15
43 43 H 1.08996 * 109.47442 * 173.65127 * 24 23 12
44 44 H 1.09002 * 109.47243 * 293.64892 * 24 23 12
45 45 H 1.09001 * 109.47331 * 53.65100 * 24 23 12
46 46 H 1.09002 * 109.47359 * 306.32478 * 25 23 12
47 47 H 1.08995 * 109.47577 * 66.32915 * 25 23 12
48 48 H 1.09006 * 109.47268 * 186.32862 * 25 23 12
49 49 H 1.08997 * 110.36858 * 322.93289 * 26 10 8
50 50 H 1.08999 * 110.36307 * 85.25503 * 26 10 8
Note: An asterisk (*) indicates this parameter was or will be optimized.
Cartesian coordinates (angstroms)
NO. Atom X Y Z
1 6 0.0000 0.0000 0.0000
2 6 1.5299 0.0000 0.0000
3 6 2.0399 1.4425 0.0000
4 6 2.0399 -0.7213 -1.2493
5 6 2.0323 -0.7105 1.2304
6 6 1.7944 -1.9974 1.5741
7 6 2.4871 -2.1563 2.8066
8 6 2.5619 -3.3841 3.6354
9 8 1.9869 -4.3934 3.2791
10 7 3.2674 -3.3802 4.7837
11 6 4.0081 -2.2338 5.3303
12 6 4.6343 -2.6876 6.6659
13 1 4.5750 -1.8929 7.4093
14 7 6.0223 -3.1130 6.4693
15 6 7.0335 -2.1903 6.5094
16 1 6.8076 -1.1490 6.6855
17 6 8.3487 -2.5935 6.3237
18 7 8.6240 -3.8625 6.1086
19 14 9.7280 -1.3350 6.3790
20 1 10.2254 -1.2066 7.7723
21 1 10.8372 -1.7772 5.4962
22 1 9.2179 -0.0207 5.9124
23 6 3.7444 -3.8906 7.0759
24 6 2.4665 -3.4157 7.7705
25 6 4.5170 -4.8678 7.9641
26 6 3.4253 -4.5249 5.6991
27 7 3.0504 -1.0008 3.0588
28 8 2.8062 -0.1921 2.1939
29 1 -0.3633 0.5138 0.8900
30 1 -0.3634 0.5138 -0.8899
31 1 -0.3633 -1.0276 -0.0005
32 1 3.1299 1.4425 -0.0005
33 1 1.6766 1.9564 -0.8900
34 1 1.6767 1.9562 0.8900
35 1 1.6766 -1.7489 -1.2493
36 1 1.6765 -0.2073 -2.1393
37 1 3.1299 -0.7208 -1.2495
38 1 1.2122 -2.7327 1.0384
39 1 4.7929 -1.9342 4.6358
40 1 3.3266 -1.4011 5.5044
41 1 6.2252 -4.0482 6.3108
42 1 9.5430 -4.1442 5.9784
43 1 1.8101 -4.2680 7.9461
44 1 2.7217 -2.9514 8.7231
45 1 1.9571 -2.6893 7.1372
46 1 5.4424 -5.1575 7.4662
47 1 4.7506 -4.3882 8.9146
48 1 3.9085 -5.7541 8.1442
49 1 2.5004 -5.0993 5.7513
50 1 4.2493 -5.1599 5.3738
RHF calculation, no. of doubly occupied orbitals= 64
REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN:
H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987).
REFERENCE FOR CHARGE MODEL 2:
J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885.
REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL:
J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and
D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63
P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted.
CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R
& SOLVNT=WATER
ZINC000996034727.mol2 50
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
SCF FIELD WAS ACHIEVED
Wall clock time and date at job start Tue Mar 31 2020 18:59:40
Heat of formation + Delta-G solvation = 14.673589 kcal
Electronic energy + Delta-G solvation = -30216.152760 eV
Core-core repulsion = 26246.168415 eV
Total energy + Delta-G solvation = -3969.984345 eV
No. of doubly occupied orbitals = 64
Molecular weight
(most abundant/longest-lived isotopes) = 335.200 amu
Computer time = 1.18 seconds
Orbital eigenvalues (eV)
-46.23205 -41.46290 -39.44245 -38.29306 -35.84247 -35.26301 -34.46652 -32.66922
-31.96366 -29.57905 -28.56078 -28.16669 -28.09029 -27.91359 -25.91351 -24.96986
-24.26261 -23.12181 -21.99657 -20.41277 -19.62813 -19.16389 -18.93542 -18.31979
-17.73013 -17.31226 -16.71306 -16.49248 -15.89546 -15.69761 -15.50494 -15.10389
-15.02093 -14.95761 -14.64257 -14.61266 -14.37640 -13.80844 -13.59500 -13.33239
-13.24601 -13.20737 -13.15254 -12.85313 -12.82500 -12.74282 -12.65166 -12.57114
-12.25631 -12.21290 -12.09385 -12.02673 -11.93571 -11.79456 -11.61090 -11.53740
-11.49336 -11.30346 -10.97813 -10.48883 -9.84362 -9.06343 -7.96051 -5.24893
0.00348 0.59805 1.46423 1.47307 1.55477 1.61501 1.92530 1.97093
2.54048 2.76388 3.21618 3.34110 3.44797 3.72657 3.78956 3.80903
3.90330 3.93067 3.95586 4.00128 4.20477 4.24142 4.38265 4.41053
4.52465 4.54913 4.71761 4.77823 4.78652 4.80197 4.84242 4.86743
4.88722 4.94302 5.00266 5.00520 5.01682 5.04553 5.09934 5.15117
5.25718 5.28605 5.34190 5.39203 5.42139 5.50781 5.56590 6.23283
6.25168 6.70149 7.02275 7.32786 8.04651 8.29181 9.26952
Molecular weight = 335.20amu
Principal moments of inertia in cm(-1)
A = 0.010893 B = 0.003545 C = 0.002905
Principal moments of inertia in units of 10**(-40)*gram-cm**2
A = 2569.947996 B = 7895.750223 C = 9637.537256
Net atomic charges, atomic populations, and dipole contributions
calculated with CM2
Atom NO. Type Charge No. of electrons
1 C -0.139 4.139
2 C 0.018 3.982
3 C -0.149 4.149
4 C -0.142 4.142
5 C -0.010 4.010
6 C -0.185 4.185
7 C -0.046 4.046
8 C 0.601 3.399
9 O -0.562 6.562
10 N -0.591 5.591
11 C 0.096 3.904
12 C 0.171 3.829
13 H 0.078 0.922
14 N -0.721 5.721
15 C -0.239 4.239
16 H 0.077 0.923
17 C -0.070 4.070
18 N -0.967 5.967
19 Si 0.968 3.032
20 H -0.285 1.285
21 H -0.300 1.300
22 H -0.271 1.271
23 C -0.075 4.075
24 C -0.123 4.123
25 C -0.121 4.121
26 C 0.119 3.881
27 N -0.343 5.343
28 O 0.128 5.872
29 H 0.057 0.943
30 H 0.095 0.905
31 H 0.063 0.937
32 H 0.054 0.946
33 H 0.093 0.907
34 H 0.061 0.939
35 H 0.063 0.937
36 H 0.097 0.903
37 H 0.051 0.949
38 H 0.192 0.808
39 H 0.047 0.953
40 H 0.072 0.928
41 H 0.377 0.623
42 H 0.250 0.750
43 H 0.074 0.926
44 H 0.073 0.927
45 H 0.048 0.952
46 H 0.040 0.960
47 H 0.062 0.938
48 H 0.074 0.926
49 H 0.088 0.912
50 H 0.052 0.948
For the charges calculated by CM2:
Dipole moment (debyes) X Y Z Total
from point charges -19.618 8.269 -10.204 23.608
Note: The Mulliken population analysis charges presented below were not
used in the solvation calculation but are provided for completeness.
The chosen solvation model uses CM2 partial charges for calculating
solvation energies.
Net atomic charges, atomic populations, and dipole contributions
using Mulliken population analysis
Atom NO. Type Charge No. of electrons
1 C -0.197 4.197
2 C 0.016 3.984
3 C -0.206 4.206
4 C -0.200 4.200
5 C -0.073 4.073
6 C -0.208 4.208
7 C -0.203 4.203
8 C 0.389 3.611
9 O -0.441 6.441
10 N -0.322 5.322
11 C -0.030 4.030
12 C 0.060 3.940
13 H 0.096 0.904
14 N -0.361 5.361
15 C -0.371 4.371
16 H 0.095 0.905
17 C -0.262 4.262
18 N -0.617 5.617
19 Si 0.798 3.202
20 H -0.211 1.211
21 H -0.227 1.227
22 H -0.196 1.196
23 C -0.077 4.077
24 C -0.180 4.180
25 C -0.179 4.179
26 C -0.002 4.002
27 N -0.042 5.042
28 O 0.050 5.950
29 H 0.077 0.923
30 H 0.114 0.886
31 H 0.082 0.918
32 H 0.074 0.926
33 H 0.111 0.889
34 H 0.080 0.920
35 H 0.082 0.918
36 H 0.115 0.885
37 H 0.070 0.930
38 H 0.210 0.790
39 H 0.066 0.934
40 H 0.090 0.910
41 H 0.211 0.789
42 H 0.059 0.941
43 H 0.093 0.907
44 H 0.092 0.908
45 H 0.067 0.933
46 H 0.059 0.941
47 H 0.081 0.919
48 H 0.093 0.907
49 H 0.106 0.894
50 H 0.071 0.929
Dipole moment (debyes) X Y Z Total
from point charges -19.055 8.282 -9.361 22.789
hybrid contribution 1.107 -0.512 -0.524 1.328
sum -17.949 7.769 -9.885 21.914
Atomic orbital electron populations
1.21964 0.90483 1.03322 1.03882 1.19455 0.97127 0.95533 0.86264
1.21945 1.01517 0.93167 1.03971 1.21994 1.01288 1.00891 0.95798
1.25174 0.94789 0.93252 0.94128 1.22491 1.05134 0.97785 0.95373
1.23406 1.03622 0.94083 0.99239 1.16810 0.78847 0.85759 0.79729
1.90721 1.48178 1.33617 1.71584 1.48333 1.47820 1.15175 1.20854
1.23022 0.94357 0.87638 0.97977 1.21460 0.84013 0.95869 0.92642
0.90417 1.42592 1.00589 1.07666 1.85236 1.19596 0.87041 0.90885
1.39587 0.90473 1.25480 0.99621 0.97744 1.03379 1.69814 1.18592
1.15781 1.57538 0.85219 0.79134 0.78703 0.77191 1.21148 1.22655
1.19638 1.21985 0.96666 0.95644 0.93358 1.21653 0.94542 1.01650
1.00186 1.21532 0.99100 0.98326 0.98895 1.22414 1.01318 0.88073
0.88419 1.74395 1.18104 1.00779 1.10950 1.84781 1.50719 1.35060
1.24406 0.92348 0.88586 0.91805 0.92646 0.88865 0.92029 0.91826
0.88467 0.92988 0.79041 0.93424 0.90998 0.78923 0.94120 0.90664
0.90817 0.93254 0.94106 0.91913 0.90703 0.89378 0.92946
Number of geometries 1
Number of calculations of the screened coulomb radii 1
The total number of SCF iterations 15.
Note: The number of geometries may not
correspond to the number of cycles due to rejected geometry changes.
In the following table subtotal= G_P + SS G_CDS.
Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M
number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value
1 C -0.14 -1.35 8.36 71.98 0.60 -0.75 16
2 C 0.02 0.23 0.94 -52.93 -0.05 0.18 16
3 C -0.15 -1.74 8.07 71.98 0.58 -1.16 16
4 C -0.14 -1.62 8.36 71.98 0.60 -1.01 16
5 C -0.01 -0.22 5.76 25.01 0.14 -0.08 16
6 C -0.19 -4.81 10.40 22.60 0.24 -4.58 16
7 C -0.05 -1.57 7.03 42.96 0.30 -1.26 16
8 C 0.60 23.12 7.88 86.93 0.68 23.80 16
9 O -0.56 -23.28 17.21 -3.71 -0.06 -23.35 16
10 N -0.59 -22.24 3.31 -814.63 -2.70 -24.93 16
11 C 0.10 3.69 4.92 86.73 0.43 4.12 16
12 C 0.17 6.62 2.87 46.18 0.13 6.75 16
13 H 0.08 2.92 8.03 -2.39 -0.02 2.90 16
14 N -0.72 -35.33 4.59 -317.33 -1.46 -36.79 16
15 C -0.24 -13.02 9.98 84.03 0.84 -12.18 16
16 H 0.08 4.03 7.83 -2.91 -0.02 4.01 16
17 C -0.07 -3.97 5.50 84.86 0.47 -3.50 16
18 N -0.97 -58.87 13.06 21.65 0.28 -58.59 16
19 Si 0.97 46.15 29.55 68.60 2.03 48.18 16
20 H -0.28 -13.23 7.11 99.48 0.71 -12.53 16
21 H -0.30 -14.56 7.11 99.48 0.71 -13.85 16
22 H -0.27 -12.34 7.11 99.48 0.71 -11.63 16
23 C -0.08 -2.37 0.83 -50.79 -0.04 -2.42 16
24 C -0.12 -3.04 8.60 71.98 0.62 -2.42 16
25 C -0.12 -3.80 8.35 71.98 0.60 -3.20 16
26 C 0.12 4.16 5.81 86.86 0.51 4.66 16
27 N -0.34 -11.59 9.73 -49.51 -0.48 -12.07 16
28 O 0.13 3.57 10.65 71.86 0.77 4.34 16
29 H 0.06 0.63 8.14 -2.39 -0.02 0.62 16
30 H 0.10 0.49 8.14 -2.39 -0.02 0.47 16
31 H 0.06 0.64 8.04 -2.39 -0.02 0.62 16
32 H 0.05 0.77 8.14 -2.39 -0.02 0.75 16
33 H 0.09 0.63 8.14 -2.39 -0.02 0.61 16
34 H 0.06 0.77 8.14 -2.39 -0.02 0.75 16
35 H 0.06 0.74 8.02 -2.39 -0.02 0.72 16
36 H 0.10 0.62 8.14 -2.39 -0.02 0.60 16
37 H 0.05 0.72 8.14 -2.39 -0.02 0.70 16
38 H 0.19 4.20 8.06 -2.91 -0.02 4.18 16
39 H 0.05 2.17 7.70 -2.39 -0.02 2.16 16
40 H 0.07 2.57 7.69 -2.39 -0.02 2.55 16
41 H 0.38 19.97 6.02 -92.71 -0.56 19.41 16
42 H 0.25 14.87 8.31 -92.71 -0.77 14.10 16
43 H 0.07 1.59 8.14 -2.39 -0.02 1.57 16
44 H 0.07 1.65 8.14 -2.39 -0.02 1.63 16
45 H 0.05 1.26 7.81 -2.39 -0.02 1.24 16
46 H 0.04 1.56 6.17 -2.39 -0.01 1.55 16
47 H 0.06 1.93 8.14 -2.39 -0.02 1.91 16
48 H 0.07 1.91 8.14 -2.38 -0.02 1.89 16
49 H 0.09 2.80 7.95 -2.39 -0.02 2.78 16
50 H 0.05 2.04 8.04 -2.39 -0.02 2.02 16
Total: -1.00 -69.89 402.31 5.39 -64.50
By element:
Atomic # 1 Polarization: 31.38 SS G_CDS: 0.37 Total: 31.75 kcal
Atomic # 6 Polarization: 0.31 SS G_CDS: 6.65 Total: 6.96 kcal
Atomic # 7 Polarization: -128.03 SS G_CDS: -4.35 Total: -132.38 kcal
Atomic # 8 Polarization: -19.71 SS G_CDS: 0.70 Total: -19.01 kcal
Atomic # 14 Polarization: 46.15 SS G_CDS: 2.03 Total: 48.18 kcal
Total: -69.89 5.39 -64.50 kcal
The number of atoms in the molecule is 50
The average number of expansion shells was 16.00
The maximum number of expansion shells was 16
The minimum number of expansion shells was 16
**** NOTA BENE ****
This is the net solvation energy for this exact molecular structure
(nuclear and electronic)! The standard-state solvation energy should be
obtained as the difference between the heat of formation plus delta-G solvation
for the relaxed solvated system and that for the relaxed gas-phase system.
ZINC000996034727.mol2 50
1SCF run
This is a breakdown of the solvation energy calculated
without geometric relaxation in solution:
(1) E-EN(sol) electronic-nuclear energy of solute 79.175 kcal
(2) G-P(sol) polarization free energy of solvation -69.890 kcal
(3) G-ENP(sol) elect.-nuc.-pol. free energy of system 9.285 kcal
(4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.388 kcal
(5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -64.502 kcal
(6) G-S(sol) free energy of system = (1) + (5) 14.674 kcal
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
Total computer time = 1.18 seconds