Wall clock time and date at job start Tue Mar 31 2020 18:59:34
AMSOL-version 7.1
by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers,
I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget,
B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar
Copyright 2004 by Regents of the University of Minnesota.
All rights reserved.
Notice: recipients of this code are asked to comply
with the user agreement in Section 1 of the documentation file.
*******************************************************************************
* 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION
* - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT)
* GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK
* TLIMIT= - A TIME OF 15. SECONDS REQUESTED
* CHARGE - CHARGE ON SYSTEM= -1
* AM1 - THE AM1 HAMILTONIAN TO BE USED
* DEV - DEVELOPER OPTIONS ARE ALLOWED
* SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED
* - CHARGE MODEL 2 WILL BE USED (CM2A)
* - THE SOLVENT IS USER-SPECIFIED
* DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06
* IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345
* ALPHA - THE SOLVENT ALPHA IS 0.00
* BETA - THE SOLVENT BETA IS 0.00
* GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS
* 38.93 CAL MOL^-1 ANGSTROM^-2
* FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00
* FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00
*******************************************************************************
Atom NO. Chemical Bond length Bond angle Dihedral angle
number (k) symbol (angstroms) (degrees) (degrees)
(I) NA:I NB:NA:I NC:NB:NA:I NA NB NC
1 1 C
2 2 N 1.46900 * 1
3 3 C 1.46906 * 110.99427 * 2 1
4 4 C 1.46897 * 111.00125 * 123.95381 * 2 1 3
5 5 C 1.50698 * 109.47004 * 165.35726 * 4 2 1
6 6 C 1.40370 * 126.64934 * 103.93879 * 5 4 2
7 7 C 1.35128 * 107.11695 * 180.22293 * 6 5 4
8 8 O 1.33930 * 108.76646 * 359.78064 * 7 6 5
9 9 C 1.34920 * 109.38547 * 359.97438 * 8 7 6
10 10 C 1.46652 * 125.98633 * 179.97438 * 9 8 7
11 11 O 1.21699 * 120.00085 * 185.57506 * 10 9 8
12 12 N 1.34776 * 120.00416 * 5.57017 * 10 9 8
13 13 C 1.47487 * 127.02979 * 0.02997 * 12 10 9
14 14 C 1.54011 * 107.24658 * 154.61171 * 13 12 10
15 15 H 1.09001 * 110.32511 * 242.21580 * 14 13 12
16 16 N 1.46498 * 110.32557 * 120.09855 * 14 13 12
17 17 C 1.36947 * 119.99725 * 86.45713 * 16 14 13
18 18 H 1.07992 * 120.00077 * 359.97438 * 17 16 14
19 19 C 1.38805 * 119.99686 * 179.97438 * 17 16 14
20 20 N 1.31623 * 120.00561 * 0.02562 * 19 17 16
21 21 Si 1.86802 * 120.00061 * 179.97438 * 19 17 16
22 22 H 1.48503 * 109.46939 * 359.97438 * 21 19 17
23 23 H 1.48497 * 109.47468 * 120.00210 * 21 19 17
24 24 H 1.48502 * 109.46956 * 240.00254 * 21 19 17
25 25 C 1.54615 * 105.04398 * 1.20793 * 14 13 12
26 26 C 1.52996 * 110.74016 * 140.18475 * 25 14 13
27 27 C 1.53005 * 110.73946 * 263.33237 * 25 14 13
28 28 C 1.48384 * 127.17539 * 179.82177 * 12 10 9
29 29 H 1.09006 * 109.47249 * 296.04150 * 1 2 3
30 30 H 1.08993 * 109.47464 * 56.04793 * 1 2 3
31 31 H 1.09006 * 109.46717 * 176.04938 * 1 2 3
32 32 H 1.09005 * 109.46511 * 190.63330 * 3 2 1
33 33 H 1.08995 * 109.47428 * 310.62828 * 3 2 1
34 34 H 1.08990 * 109.47083 * 70.63727 * 3 2 1
35 35 H 1.08998 * 109.47250 * 45.35746 * 4 2 1
36 36 H 1.09002 * 109.46800 * 285.35619 * 4 2 1
37 37 H 1.08000 * 126.43915 * 359.97438 * 6 5 4
38 38 H 1.07994 * 125.61500 * 179.77618 * 7 6 5
39 39 H 1.09003 * 109.91830 * 35.15579 * 13 12 10
40 40 H 1.08999 * 109.91376 * 274.06776 * 13 12 10
41 41 H 0.96998 * 120.00444 * 266.45181 * 16 14 13
42 42 H 0.97000 * 120.00679 * 180.02562 * 20 19 17
43 43 H 1.09007 * 109.47007 * 60.00079 * 26 25 14
44 44 H 1.09002 * 109.47208 * 179.97438 * 26 25 14
45 45 H 1.09004 * 109.47376 * 300.00240 * 26 25 14
46 46 H 1.09000 * 109.46827 * 59.99841 * 27 25 14
47 47 H 1.09001 * 109.46770 * 179.97438 * 27 25 14
48 48 H 1.09002 * 109.46907 * 299.99860 * 27 25 14
49 49 H 1.08994 * 110.51871 * 100.79699 * 28 12 10
50 50 H 1.09001 * 110.83075 * 337.82566 * 28 12 10
Note: An asterisk (*) indicates this parameter was or will be optimized.
Cartesian coordinates (angstroms)
NO. Atom X Y Z
1 6 0.0000 0.0000 0.0000
2 7 1.4690 0.0000 0.0000
3 6 1.9953 1.3715 0.0000
4 6 1.9955 -0.7660 1.1376
5 6 3.4588 -1.0506 0.9173
6 6 4.5404 -0.4083 1.5401
7 6 5.6697 -0.9666 1.0513
8 8 5.3336 -1.9165 0.1689
9 6 3.9895 -1.9858 0.0757
10 6 3.2313 -2.9004 -0.7842
11 8 2.0206 -2.8020 -0.8592
12 7 3.8753 -3.8499 -1.4915
13 6 5.3273 -4.1070 -1.5168
14 6 5.5225 -5.5862 -1.8988
15 1 6.0176 -6.1239 -1.0902
16 7 6.3035 -5.6940 -3.1336
17 6 7.6719 -5.7034 -3.0796
18 1 8.1752 -5.6310 -2.1270
19 6 8.4118 -5.8061 -4.2495
20 7 7.7984 -5.8940 -5.4108
21 14 10.2783 -5.8183 -4.1761
22 1 10.7188 -5.7065 -2.7623
23 1 10.7883 -7.0870 -4.7552
24 1 10.8117 -4.6702 -4.9525
25 6 4.0941 -6.1362 -2.1170
26 6 4.0555 -7.0824 -3.3187
27 6 3.5870 -6.8419 -0.8577
28 6 3.2713 -4.8544 -2.4015
29 1 -0.3634 0.4512 0.9234
30 1 -0.3634 0.5739 -0.8524
31 1 -0.3633 -1.0253 -0.0708
32 1 3.0685 1.3488 -0.1896
33 1 1.5008 1.9505 -0.7799
34 1 1.8074 1.8328 0.9694
35 1 1.4516 -1.7064 1.2252
36 1 1.8716 -0.1878 2.0533
37 1 4.4812 0.3859 2.2697
38 1 6.6772 -0.6921 1.3267
39 1 5.7550 -3.9184 -0.5320
40 1 5.8051 -3.4661 -2.2577
41 1 5.8514 -5.7588 -3.9893
42 1 8.3155 -5.9661 -6.2283
43 1 4.7319 -7.9192 -3.1441
44 1 3.0410 -7.4577 -3.4532
45 1 4.3663 -6.5449 -4.2146
46 1 3.5692 -6.1356 -0.0277
47 1 2.5801 -7.2205 -1.0339
48 1 4.2503 -7.6719 -0.6144
49 1 3.3861 -4.5464 -3.4406
50 1 2.2196 -5.0115 -2.1621
RHF calculation, no. of doubly occupied orbitals= 64
REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN:
H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987).
REFERENCE FOR CHARGE MODEL 2:
J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885.
REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL:
J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and
D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63
P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted.
CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R
& SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93
& DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV
ZINC000996195796.mol2 50
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
SCF FIELD WAS ACHIEVED
Wall clock time and date at job start Tue Mar 31 2020 18:59:34
Heat of formation + Delta-G solvation = 15.325458 kcal
Electronic energy + Delta-G solvation = -30556.420226 eV
Core-core repulsion = 26586.464148 eV
Total energy + Delta-G solvation = -3969.956078 eV
No. of doubly occupied orbitals = 64
Molecular weight
(most abundant/longest-lived isotopes) = 335.200 amu
Computer time = 1.00 seconds
Orbital eigenvalues (eV)
-42.67107 -39.72515 -37.94107 -37.31104 -34.06271 -33.37380 -32.96805 -30.77746
-30.21783 -27.82546 -27.59764 -27.50780 -26.72814 -25.93767 -23.88427 -22.82692
-22.11995 -21.47077 -20.79741 -19.11652 -18.57646 -17.31884 -17.09561 -16.43855
-16.20119 -15.46617 -15.26491 -15.21446 -15.05069 -14.63083 -14.56675 -14.09904
-13.81309 -13.48903 -13.39413 -13.06132 -12.96641 -12.60664 -12.54591 -12.42410
-12.32151 -11.91217 -11.80853 -11.70546 -11.67870 -11.61613 -11.48831 -11.32467
-10.92624 -10.91945 -10.53423 -10.43009 -10.18063 -9.92216 -9.84619 -9.72859
-9.60835 -8.99180 -8.65660 -8.32708 -8.19775 -7.04658 -5.82531 -3.12060
1.18779 2.31094 2.78817 3.36322 3.40175 3.42550 3.46275 3.48243
4.06467 4.54109 4.64329 4.65288 4.80010 5.01248 5.10654 5.14579
5.19830 5.27603 5.28027 5.36391 5.48651 5.49963 5.54477 5.60690
5.67543 5.73963 5.79295 5.81846 5.85955 5.89087 5.95368 5.96789
6.02624 6.13377 6.21543 6.30199 6.31493 6.36238 6.41340 6.50556
6.56409 6.66069 6.87722 6.91569 6.98690 7.01635 7.05429 7.66765
7.85670 8.34982 8.38512 9.47898 10.02907 10.37903 11.39766
Molecular weight = 335.20amu
Principal moments of inertia in cm(-1)
A = 0.013874 B = 0.003391 C = 0.002990
Principal moments of inertia in units of 10**(-40)*gram-cm**2
A = 2017.674287 B = 8254.165682 C = 9362.204119
Net atomic charges, atomic populations, and dipole contributions
calculated with CM2
Atom NO. Type Charge No. of electrons
1 C 0.032 3.968
2 N -0.530 5.530
3 C 0.025 3.975
4 C 0.128 3.872
5 C -0.100 4.100
6 C -0.223 4.223
7 C -0.013 4.013
8 O -0.152 6.152
9 C -0.041 4.041
10 C 0.612 3.388
11 O -0.516 6.516
12 N -0.606 5.606
13 C 0.075 3.925
14 C 0.177 3.823
15 H 0.065 0.935
16 N -0.715 5.715
17 C -0.243 4.243
18 H 0.072 0.928
19 C -0.009 4.009
20 N -0.930 5.930
21 Si 0.906 3.094
22 H -0.280 1.280
23 H -0.292 1.292
24 H -0.292 1.292
25 C -0.089 4.089
26 C -0.125 4.125
27 C -0.128 4.128
28 C 0.121 3.879
29 H 0.018 0.982
30 H 0.065 0.935
31 H 0.073 0.927
32 H 0.066 0.934
33 H 0.064 0.936
34 H 0.021 0.979
35 H 0.091 0.909
36 H 0.039 0.961
37 H 0.150 0.850
38 H 0.206 0.794
39 H 0.066 0.934
40 H 0.078 0.922
41 H 0.388 0.612
42 H 0.255 0.745
43 H 0.064 0.936
44 H 0.044 0.956
45 H 0.067 0.933
46 H 0.050 0.950
47 H 0.052 0.948
48 H 0.058 0.942
49 H 0.074 0.926
50 H 0.078 0.922
For the charges calculated by CM2:
Dipole moment (debyes) X Y Z Total
from point charges -11.128 9.171 13.965 20.074
Note: The Mulliken population analysis charges presented below were not
used in the solvation calculation but are provided for completeness.
The chosen solvation model uses CM2 partial charges for calculating
solvation energies.
Net atomic charges, atomic populations, and dipole contributions
using Mulliken population analysis
Atom NO. Type Charge No. of electrons
1 C -0.116 4.116
2 N -0.253 5.253
3 C -0.123 4.123
4 C 0.001 3.999
5 C -0.103 4.103
6 C -0.242 4.242
7 C -0.083 4.083
8 O -0.046 6.046
9 C -0.094 4.094
10 C 0.400 3.600
11 O -0.394 6.394
12 N -0.338 5.338
13 C -0.050 4.050
14 C 0.065 3.935
15 H 0.082 0.918
16 N -0.357 5.357
17 C -0.374 4.374
18 H 0.090 0.910
19 C -0.206 4.206
20 N -0.578 5.578
21 Si 0.737 3.263
22 H -0.205 1.205
23 H -0.219 1.219
24 H -0.219 1.219
25 C -0.090 4.090
26 C -0.182 4.182
27 C -0.186 4.186
28 C -0.001 4.001
29 H 0.037 0.963
30 H 0.084 0.916
31 H 0.092 0.908
32 H 0.085 0.915
33 H 0.083 0.917
34 H 0.040 0.960
35 H 0.110 0.890
36 H 0.057 0.943
37 H 0.167 0.833
38 H 0.223 0.777
39 H 0.084 0.916
40 H 0.096 0.904
41 H 0.225 0.775
42 H 0.065 0.935
43 H 0.083 0.917
44 H 0.063 0.937
45 H 0.086 0.914
46 H 0.069 0.931
47 H 0.071 0.929
48 H 0.077 0.923
49 H 0.092 0.908
50 H 0.097 0.903
Dipole moment (debyes) X Y Z Total
from point charges -11.276 8.852 13.369 19.602
hybrid contribution 0.976 0.817 0.594 1.404
sum -10.300 9.669 13.963 19.863
Atomic orbital electron populations
1.22328 0.86932 1.02686 0.99675 1.61785 1.07759 1.12981 1.42780
1.22412 1.01258 0.88964 0.99656 1.20410 0.89693 0.98970 0.90833
1.20277 0.96350 0.96099 0.97620 1.21626 0.91603 1.05025 1.05989
1.24324 1.00419 0.91026 0.92566 1.84292 1.22962 1.47135 1.50255
1.21979 0.80205 1.03041 1.04165 1.16104 0.85802 0.79063 0.79018
1.90845 1.11851 1.71269 1.65451 1.48748 1.09854 1.31594 1.43643
1.23540 0.78584 1.01180 1.01710 1.21088 0.90039 0.91026 0.91363
0.91755 1.42646 1.03104 1.87096 1.02844 1.19286 0.82438 1.42748
0.92976 0.91049 1.24730 0.97881 1.02627 0.95321 1.69660 1.34206
1.56922 0.96980 0.86144 0.85750 0.77179 0.77245 1.20532 1.21877
1.21891 1.21928 0.96248 0.94356 0.96511 1.21592 1.00308 0.99194
0.97155 1.21701 1.00442 0.99880 0.96578 1.22585 0.97585 0.86530
0.93353 0.96310 0.91583 0.90831 0.91485 0.91699 0.96028 0.89044
0.94262 0.83251 0.77713 0.91571 0.90418 0.77461 0.93469 0.91695
0.93692 0.91395 0.93088 0.92893 0.92329 0.90763 0.90337
Number of geometries 1
Number of calculations of the screened coulomb radii 1
The total number of SCF iterations 14.
Note: The number of geometries may not
correspond to the number of cycles due to rejected geometry changes.
In the following table subtotal= G_P + SS G_CDS.
Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M
number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value
1 C 0.03 0.34 9.53 60.06 0.57 0.92 16
2 N -0.53 -6.80 4.72 -252.72 -1.19 -7.99 16
3 C 0.03 0.27 9.39 60.07 0.56 0.84 16
4 C 0.13 1.61 4.50 -4.98 -0.02 1.58 16
5 C -0.10 -1.36 4.92 -104.43 -0.51 -1.87 16
6 C -0.22 -2.44 10.74 -39.89 -0.43 -2.87 16
7 C -0.01 -0.15 12.08 29.63 0.36 0.21 16
8 O -0.15 -2.26 8.06 4.98 0.04 -2.22 16
9 C -0.04 -0.64 6.93 -36.80 -0.25 -0.90 16
10 C 0.61 10.73 7.86 -12.86 -0.10 10.62 16
11 O -0.52 -9.65 15.19 5.19 0.08 -9.57 16
12 N -0.61 -10.47 3.23 -171.08 -0.55 -11.02 16
13 C 0.08 1.37 6.01 -2.97 -0.02 1.36 16
14 C 0.18 3.35 3.09 -66.56 -0.21 3.14 16
15 H 0.06 1.24 7.83 -51.93 -0.41 0.83 16
16 N -0.71 -16.66 4.51 -52.10 -0.24 -16.89 16
17 C -0.24 -6.38 9.97 -15.06 -0.15 -6.53 16
18 H 0.07 1.82 7.83 -52.49 -0.41 1.41 16
19 C -0.01 -0.25 5.50 -17.43 -0.10 -0.35 16
20 N -0.93 -26.96 13.06 55.49 0.72 -26.24 16
21 Si 0.91 21.68 29.55 -169.99 -5.02 16.65 16
22 H -0.28 -6.48 7.11 56.52 0.40 -6.08 16
23 H -0.29 -7.06 7.11 56.52 0.40 -6.66 16
24 H -0.29 -7.08 7.11 56.52 0.40 -6.68 16
25 C -0.09 -1.42 0.93 -152.63 -0.14 -1.57 16
26 C -0.12 -2.02 7.82 37.16 0.29 -1.73 16
27 C -0.13 -1.79 8.50 37.16 0.32 -1.48 16
28 C 0.12 1.99 5.99 -1.98 -0.01 1.97 16
29 H 0.02 0.17 8.14 -51.93 -0.42 -0.25 16
30 H 0.07 0.65 8.05 -51.93 -0.42 0.23 16
31 H 0.07 0.85 8.09 -51.93 -0.42 0.43 16
32 H 0.07 0.77 7.57 -51.93 -0.39 0.38 16
33 H 0.06 0.63 8.00 -51.93 -0.42 0.22 16
34 H 0.02 0.20 7.99 -51.93 -0.41 -0.22 16
35 H 0.09 1.24 7.20 -51.93 -0.37 0.87 16
36 H 0.04 0.42 7.96 -51.93 -0.41 0.00 16
37 H 0.15 1.23 8.06 -52.49 -0.42 0.81 16
38 H 0.21 1.45 8.06 -52.49 -0.42 1.02 16
39 H 0.07 1.15 6.37 -51.93 -0.33 0.82 16
40 H 0.08 1.61 7.92 -51.93 -0.41 1.20 16
41 H 0.39 9.58 5.51 -40.82 -0.23 9.36 16
42 H 0.26 7.21 8.31 -40.82 -0.34 6.87 16
43 H 0.06 1.12 8.14 -51.93 -0.42 0.70 16
44 H 0.04 0.61 8.14 -51.93 -0.42 0.19 16
45 H 0.07 1.24 6.23 -51.93 -0.32 0.91 16
46 H 0.05 0.73 8.09 -51.93 -0.42 0.31 16
47 H 0.05 0.66 8.14 -51.93 -0.42 0.24 16
48 H 0.06 0.79 8.14 -51.93 -0.42 0.37 16
49 H 0.07 1.27 8.02 -51.93 -0.42 0.85 16
50 H 0.08 1.22 7.79 -51.93 -0.40 0.82 16
LS Contribution 398.98 15.07 6.01 6.01
Total: -1.00 -30.65 398.98 -8.28 -38.93
By element:
Atomic # 1 Polarization: 17.26 SS G_CDS: -8.29 Total: 8.97 kcal
Atomic # 6 Polarization: 3.20 SS G_CDS: 0.16 Total: 3.36 kcal
Atomic # 7 Polarization: -60.88 SS G_CDS: -1.25 Total: -62.14 kcal
Atomic # 8 Polarization: -11.91 SS G_CDS: 0.12 Total: -11.79 kcal
Atomic # 14 Polarization: 21.68 SS G_CDS: -5.02 Total: 16.65 kcal
Total LS contribution 6.01 Total: 6.01 kcal
Total: -30.65 -8.28 -38.93 kcal
The number of atoms in the molecule is 50
The average number of expansion shells was 16.00
The maximum number of expansion shells was 16
The minimum number of expansion shells was 16
**** NOTA BENE ****
This is the net solvation energy for this exact molecular structure
(nuclear and electronic)! The standard-state solvation energy should be
obtained as the difference between the heat of formation plus delta-G solvation
for the relaxed solvated system and that for the relaxed gas-phase system.
ZINC000996195796.mol2 50
1SCF run
This is a breakdown of the solvation energy calculated
without geometric relaxation in solution:
(1) E-EN(sol) electronic-nuclear energy of solute 54.257 kcal
(2) G-P(sol) polarization free energy of solvation -30.648 kcal
(3) G-ENP(sol) elect.-nuc.-pol. free energy of system 23.609 kcal
(4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.283 kcal
(5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.931 kcal
(6) G-S(sol) free energy of system = (1) + (5) 15.325 kcal
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
Total computer time = 1.00 seconds