Wall clock time and date at job start Tue Mar 31 2020 20:10:11 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50705 * 1 3 3 N 1.33682 * 126.27735 * 2 1 4 4 C 1.30613 * 108.99915 * 179.97438 * 3 2 1 5 5 C 1.50704 * 125.42623 * 179.97438 * 4 3 2 6 6 C 1.52997 * 109.46770 * 300.04299 * 5 4 3 7 7 C 1.52997 * 109.47175 * 60.04316 * 5 4 3 8 8 O 1.33662 * 109.15512 * 0.02562 * 4 3 2 9 9 C 1.35345 * 107.68411 * 359.97438 * 8 4 3 10 10 C 1.46722 * 126.64550 * 179.73268 * 9 8 4 11 11 O 1.21689 * 119.99888 * 180.02562 * 10 9 8 12 12 N 1.34773 * 119.99844 * 0.03561 * 10 9 8 13 13 C 1.47020 * 125.65085 * 0.02562 * 12 10 9 14 14 C 1.54320 * 107.27054 * 181.02794 * 13 12 10 15 15 H 1.09000 * 110.71979 * 263.82652 * 14 13 12 16 16 N 1.46507 * 110.72191 * 140.55989 * 14 13 12 17 17 C 1.36932 * 119.99952 * 86.44868 * 16 14 13 18 18 H 1.08001 * 120.00099 * 0.02562 * 17 16 14 19 19 C 1.38812 * 119.99761 * 180.02562 * 17 16 14 20 20 N 1.31624 * 120.00098 * 0.02562 * 19 17 16 21 21 Si 1.86802 * 120.00041 * 180.02562 * 19 17 16 22 22 H 1.48498 * 109.46995 * 59.99945 * 21 19 17 23 23 H 1.48499 * 109.47032 * 179.97438 * 21 19 17 24 24 H 1.48493 * 109.47111 * 300.00036 * 21 19 17 25 25 C 1.55151 * 102.94764 * 22.19258 * 14 13 12 26 26 C 1.53000 * 111.00411 * 82.56844 * 25 14 13 27 27 C 1.52997 * 111.01042 * 206.38887 * 25 14 13 28 28 C 1.47428 * 125.64716 * 179.71589 * 12 10 9 29 29 H 1.08995 * 109.47140 * 270.00356 * 1 2 3 30 30 H 1.09000 * 109.46696 * 30.00492 * 1 2 3 31 31 H 1.08999 * 109.46729 * 150.00031 * 1 2 3 32 32 H 1.08996 * 109.47474 * 180.02562 * 5 4 3 33 33 H 1.09008 * 109.47000 * 179.97438 * 6 5 4 34 34 H 1.08998 * 109.47392 * 299.99661 * 6 5 4 35 35 H 1.08997 * 109.47293 * 60.00577 * 6 5 4 36 36 H 1.09003 * 109.47386 * 59.99545 * 7 5 4 37 37 H 1.08998 * 109.47521 * 180.02562 * 7 5 4 38 38 H 1.09004 * 109.47257 * 300.00157 * 7 5 4 39 39 H 1.08998 * 109.88077 * 300.44485 * 13 12 10 40 40 H 1.08999 * 109.87804 * 61.60980 * 13 12 10 41 41 H 0.97001 * 119.99402 * 266.45072 * 16 14 13 42 42 H 0.97000 * 119.99716 * 180.02562 * 20 19 17 43 43 H 1.08999 * 109.46845 * 60.00575 * 26 25 14 44 44 H 1.09001 * 109.47140 * 180.02562 * 26 25 14 45 45 H 1.08993 * 109.47227 * 300.00966 * 26 25 14 46 46 H 1.09000 * 109.47013 * 59.99702 * 27 25 14 47 47 H 1.08997 * 109.47527 * 180.02562 * 27 25 14 48 48 H 1.09005 * 109.46984 * 299.99885 * 27 25 14 49 49 H 1.09001 * 110.36223 * 274.74282 * 28 12 10 50 50 H 1.09003 * 110.36919 * 37.06136 * 28 12 10 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 7 2.2980 1.0777 0.0000 4 6 3.5452 0.6898 0.0006 5 6 4.7441 1.6029 0.0002 6 6 4.7124 2.4855 -1.2491 7 6 4.7131 2.4858 1.2493 8 8 3.5890 -0.6461 0.0004 9 6 2.3137 -1.0993 0.0002 10 6 1.8826 -2.5018 -0.0055 11 8 0.6965 -2.7737 -0.0054 12 7 2.8003 -3.4887 -0.0106 13 6 4.2587 -3.3028 -0.0106 14 6 4.8995 -4.7063 -0.0440 15 1 5.1623 -5.0342 0.9617 16 7 6.0750 -4.7188 -0.9184 17 6 7.3007 -4.3618 -0.4230 18 1 7.4009 -4.0714 0.6124 19 6 8.4143 -4.3731 -1.2516 20 7 8.2920 -4.7265 -2.5136 21 14 10.0864 -3.8868 -0.5757 22 1 10.4562 -4.8006 0.5349 23 1 11.1030 -3.9822 -1.6540 24 1 10.0294 -2.4916 -0.0705 25 6 3.7686 -5.5909 -0.6319 26 6 3.7421 -5.5038 -2.1592 27 6 3.9119 -7.0426 -0.1707 28 6 2.5081 -4.9338 -0.0107 29 1 -0.3633 0.0001 1.0276 30 1 -0.3633 0.8900 -0.5139 31 1 -0.3633 -0.8900 -0.5138 32 1 5.6558 1.0056 0.0004 33 1 5.5794 3.1464 -1.2492 34 1 4.7346 1.8566 -2.1390 35 1 3.8008 3.0829 -1.2489 36 1 4.7355 1.8570 2.1394 37 1 5.5799 3.1466 1.2489 38 1 3.8013 3.0832 1.2495 39 1 4.5602 -2.7366 -0.8919 40 1 4.5653 -2.7767 0.8934 41 1 5.9850 -4.9799 -1.8482 42 1 9.0703 -4.7348 -3.0925 43 1 4.6968 -5.8456 -2.5592 44 1 2.9400 -6.1329 -2.5452 45 1 3.5707 -4.4707 -2.4613 46 1 3.8590 -7.0851 0.9172 47 1 3.1068 -7.6407 -0.5976 48 1 4.8723 -7.4365 -0.5034 49 1 2.3547 -5.2898 1.0080 50 1 1.6308 -5.1434 -0.6228 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000996392601.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 20:10:11 Heat of formation + Delta-G solvation = -10.519892 kcal Electronic energy + Delta-G solvation = -30591.733704 eV Core-core repulsion = 26620.656888 eV Total energy + Delta-G solvation = -3971.076816 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 335.200 amu Computer time = 1.13 seconds Orbital eigenvalues (eV) -43.41602 -39.99461 -38.03927 -35.99136 -35.18261 -34.14866 -33.18038 -31.02726 -30.83332 -28.33589 -27.52655 -27.40080 -27.04375 -26.13643 -24.24766 -23.82929 -21.89898 -21.31520 -20.43649 -19.74347 -18.76799 -17.32367 -17.16030 -16.94278 -16.27598 -15.89145 -15.52944 -14.74962 -14.59230 -14.39569 -14.09813 -13.96602 -13.72124 -13.36052 -13.23403 -13.17103 -13.07970 -12.73947 -12.54594 -12.39781 -12.34736 -12.18532 -12.10419 -11.90460 -11.58896 -11.51601 -11.30435 -11.26611 -11.08874 -10.94181 -10.92268 -10.75321 -10.63672 -10.52718 -10.29555 -10.06155 -9.88379 -9.69222 -9.03741 -8.86861 -8.35962 -7.13225 -5.88876 -3.19344 0.87788 2.40323 2.41171 3.13350 3.18024 3.36217 3.41611 3.42240 3.80131 4.46141 4.53130 4.62880 4.77925 4.80974 4.83959 4.99436 5.05265 5.13670 5.38138 5.43208 5.46380 5.47300 5.54352 5.58450 5.61112 5.66392 5.67930 5.72278 5.74525 5.77383 5.84236 5.90960 5.92907 5.99271 6.00170 6.04946 6.07905 6.20631 6.30568 6.32558 6.33005 6.38501 6.52468 6.59774 6.69617 6.85721 7.52016 7.59439 7.67259 8.11214 8.29297 9.41344 9.94854 10.30299 11.33118 Molecular weight = 335.20amu Principal moments of inertia in cm(-1) A = 0.008712 B = 0.004696 C = 0.003256 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 3213.118408 B = 5961.343947 C = 8598.760961 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.076 4.076 2 C 0.073 3.927 3 N -0.487 5.487 4 C 0.223 3.777 5 C -0.003 4.003 6 C -0.143 4.143 7 C -0.142 4.142 8 O -0.174 6.174 9 C -0.110 4.110 10 C 0.618 3.382 11 O -0.531 6.531 12 N -0.599 5.599 13 C 0.076 3.924 14 C 0.181 3.819 15 H 0.067 0.933 16 N -0.710 5.710 17 C -0.249 4.249 18 H 0.071 0.929 19 C -0.006 4.006 20 N -0.930 5.930 21 Si 0.907 3.093 22 H -0.285 1.285 23 H -0.291 1.291 24 H -0.285 1.285 25 C -0.086 4.086 26 C -0.132 4.132 27 C -0.129 4.129 28 C 0.119 3.881 29 H 0.078 0.922 30 H 0.074 0.926 31 H 0.094 0.906 32 H 0.105 0.895 33 H 0.073 0.927 34 H 0.061 0.939 35 H 0.068 0.932 36 H 0.059 0.941 37 H 0.073 0.927 38 H 0.068 0.932 39 H 0.076 0.924 40 H 0.060 0.940 41 H 0.390 0.610 42 H 0.257 0.743 43 H 0.073 0.927 44 H 0.049 0.951 45 H 0.052 0.948 46 H 0.053 0.947 47 H 0.051 0.949 48 H 0.069 0.931 49 H 0.070 0.930 50 H 0.077 0.923 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -10.838 8.152 4.905 14.421 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.134 4.134 2 C -0.052 4.052 3 N -0.217 5.217 4 C 0.018 3.982 5 C -0.023 4.023 6 C -0.200 4.200 7 C -0.200 4.200 8 O -0.059 6.059 9 C -0.165 4.165 10 C 0.406 3.594 11 O -0.411 6.411 12 N -0.330 5.330 13 C -0.050 4.050 14 C 0.069 3.931 15 H 0.085 0.915 16 N -0.352 5.352 17 C -0.380 4.380 18 H 0.089 0.911 19 C -0.203 4.203 20 N -0.577 5.577 21 Si 0.737 3.263 22 H -0.212 1.212 23 H -0.216 1.216 24 H -0.212 1.212 25 C -0.088 4.088 26 C -0.190 4.190 27 C -0.186 4.186 28 C -0.003 4.003 29 H 0.097 0.903 30 H 0.093 0.907 31 H 0.112 0.888 32 H 0.123 0.877 33 H 0.092 0.908 34 H 0.080 0.920 35 H 0.087 0.913 36 H 0.078 0.922 37 H 0.092 0.908 38 H 0.087 0.913 39 H 0.094 0.906 40 H 0.078 0.922 41 H 0.227 0.773 42 H 0.067 0.933 43 H 0.092 0.908 44 H 0.069 0.931 45 H 0.071 0.929 46 H 0.072 0.928 47 H 0.070 0.930 48 H 0.088 0.912 49 H 0.088 0.912 50 H 0.096 0.904 Dipole moment (debyes) X Y Z Total from point charges -11.417 8.665 4.961 15.167 hybrid contribution 1.333 -0.366 0.056 1.383 sum -10.084 8.299 5.017 13.991 Atomic orbital electron populations 1.20332 0.85498 1.04107 1.03415 1.22001 0.98161 0.86465 0.98534 1.70242 1.00288 1.30952 1.20194 1.26554 0.95516 0.79542 0.96615 1.19793 0.90849 0.93243 0.98401 1.21832 1.03252 0.99344 0.95602 1.21830 1.03303 0.99323 0.95495 1.84643 1.29460 1.23254 1.68567 1.22836 0.81424 0.96073 1.16162 1.15969 0.84829 0.81024 0.77613 1.90811 1.15368 1.81930 1.52950 1.48376 1.07984 1.06352 1.70319 1.23440 0.76891 1.02728 1.01950 1.21214 0.87011 0.89692 0.95202 0.91542 1.42523 1.02267 1.79930 1.10491 1.19197 0.85178 1.38417 0.95168 0.91127 1.24737 0.97999 1.01846 0.95703 1.69644 1.29687 1.53729 1.04645 0.86282 0.83919 0.78374 0.77677 1.21157 1.21640 1.21181 1.22036 0.94373 0.95876 0.96478 1.21649 1.02236 1.01588 0.93507 1.21645 1.02397 0.93985 1.00605 1.22437 0.98446 0.78672 1.00784 0.90308 0.90719 0.88779 0.87721 0.90786 0.92001 0.91280 0.92190 0.90798 0.91259 0.90551 0.92192 0.77268 0.93276 0.90773 0.93148 0.92861 0.92751 0.92979 0.91224 0.91180 0.90427 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.08 -0.96 9.88 36.01 0.36 -0.61 16 2 C 0.07 1.13 7.16 -82.47 -0.59 0.54 16 3 N -0.49 -7.35 11.26 -7.07 -0.08 -7.43 16 4 C 0.22 3.26 6.82 -12.79 -0.09 3.17 16 5 C 0.00 -0.04 3.39 -91.77 -0.31 -0.35 16 6 C -0.14 -1.38 9.17 37.16 0.34 -1.04 16 7 C -0.14 -1.30 9.18 37.16 0.34 -0.95 16 8 O -0.17 -2.90 8.51 4.43 0.04 -2.87 16 9 C -0.11 -1.85 6.98 -36.84 -0.26 -2.11 16 10 C 0.62 10.78 7.82 -12.84 -0.10 10.68 16 11 O -0.53 -9.68 15.04 5.20 0.08 -9.61 16 12 N -0.60 -10.05 3.31 -171.90 -0.57 -10.62 16 13 C 0.08 1.37 4.99 -3.07 -0.02 1.35 16 14 C 0.18 3.37 2.84 -66.10 -0.19 3.18 16 15 H 0.07 1.24 8.02 -51.93 -0.42 0.83 16 16 N -0.71 -16.35 5.08 -51.65 -0.26 -16.61 16 17 C -0.25 -6.42 9.98 -15.06 -0.15 -6.57 16 18 H 0.07 1.77 7.83 -52.49 -0.41 1.36 16 19 C -0.01 -0.17 5.50 -17.43 -0.10 -0.26 16 20 N -0.93 -26.55 13.06 55.49 0.72 -25.82 16 21 Si 0.91 21.27 29.55 -169.99 -5.02 16.25 16 22 H -0.28 -6.61 7.11 56.52 0.40 -6.21 16 23 H -0.29 -6.92 7.11 56.52 0.40 -6.52 16 24 H -0.29 -6.58 7.11 56.52 0.40 -6.17 16 25 C -0.09 -1.34 0.87 -152.24 -0.13 -1.47 16 26 C -0.13 -2.13 7.94 37.16 0.30 -1.84 16 27 C -0.13 -1.77 8.68 37.16 0.32 -1.45 16 28 C 0.12 1.77 5.85 -2.40 -0.01 1.75 16 29 H 0.08 0.90 8.14 -51.93 -0.42 0.48 16 30 H 0.07 0.81 8.14 -51.93 -0.42 0.39 16 31 H 0.09 1.26 6.46 -51.93 -0.34 0.92 16 32 H 0.10 1.14 8.14 -51.93 -0.42 0.72 16 33 H 0.07 0.56 8.14 -51.92 -0.42 0.14 16 34 H 0.06 0.65 8.14 -51.93 -0.42 0.23 16 35 H 0.07 0.68 8.14 -51.93 -0.42 0.25 16 36 H 0.06 0.57 8.14 -51.93 -0.42 0.15 16 37 H 0.07 0.52 8.14 -51.93 -0.42 0.10 16 38 H 0.07 0.65 8.14 -51.93 -0.42 0.23 16 39 H 0.08 1.55 7.59 -51.93 -0.39 1.16 16 40 H 0.06 1.09 7.81 -51.93 -0.41 0.68 16 41 H 0.39 9.51 5.26 -40.82 -0.21 9.29 16 42 H 0.26 7.18 8.31 -40.82 -0.34 6.84 16 43 H 0.07 1.34 6.34 -51.93 -0.33 1.01 16 44 H 0.05 0.70 8.14 -51.93 -0.42 0.27 16 45 H 0.05 0.92 7.91 -51.93 -0.41 0.51 16 46 H 0.05 0.68 8.07 -51.93 -0.42 0.26 16 47 H 0.05 0.61 8.14 -51.93 -0.42 0.19 16 48 H 0.07 1.08 8.14 -51.93 -0.42 0.66 16 49 H 0.07 0.95 7.99 -51.93 -0.41 0.54 16 50 H 0.08 1.13 7.95 -51.93 -0.41 0.72 16 LS Contribution 401.44 15.07 6.05 6.05 Total: -1.00 -29.89 401.44 -7.71 -37.60 By element: Atomic # 1 Polarization: 17.41 SS G_CDS: -8.37 Total: 9.04 kcal Atomic # 6 Polarization: 4.32 SS G_CDS: -0.29 Total: 4.03 kcal Atomic # 7 Polarization: -60.30 SS G_CDS: -0.19 Total: -60.49 kcal Atomic # 8 Polarization: -12.59 SS G_CDS: 0.12 Total: -12.47 kcal Atomic # 14 Polarization: 21.27 SS G_CDS: -5.02 Total: 16.25 kcal Total LS contribution 6.05 Total: 6.05 kcal Total: -29.89 -7.71 -37.60 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000996392601.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 27.078 kcal (2) G-P(sol) polarization free energy of solvation -29.893 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -2.815 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.705 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.598 kcal (6) G-S(sol) free energy of system = (1) + (5) -10.520 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.14 seconds