Wall clock time and date at job start Tue Mar 31 2020 20:10:10 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50705 * 1 3 3 N 1.33682 * 126.27735 * 2 1 4 4 C 1.30613 * 108.99915 * 179.97438 * 3 2 1 5 5 C 1.50704 * 125.42623 * 179.97438 * 4 3 2 6 6 C 1.52997 * 109.46770 * 300.04299 * 5 4 3 7 7 C 1.52997 * 109.47175 * 60.04316 * 5 4 3 8 8 O 1.33662 * 109.15512 * 0.02562 * 4 3 2 9 9 C 1.35345 * 107.68411 * 359.97438 * 8 4 3 10 10 C 1.46722 * 126.64550 * 179.73268 * 9 8 4 11 11 O 1.21689 * 119.99888 * 180.02562 * 10 9 8 12 12 N 1.34773 * 119.99844 * 0.03561 * 10 9 8 13 13 C 1.47020 * 125.65085 * 0.02562 * 12 10 9 14 14 C 1.54320 * 107.27054 * 181.02794 * 13 12 10 15 15 H 1.09000 * 110.71979 * 263.82652 * 14 13 12 16 16 N 1.46507 * 110.72191 * 140.55989 * 14 13 12 17 17 C 1.36932 * 119.99952 * 86.44868 * 16 14 13 18 18 H 1.08001 * 120.00099 * 0.02562 * 17 16 14 19 19 C 1.38812 * 119.99761 * 180.02562 * 17 16 14 20 20 N 1.31624 * 120.00098 * 0.02562 * 19 17 16 21 21 Si 1.86802 * 120.00041 * 180.02562 * 19 17 16 22 22 H 1.48498 * 109.46995 * 59.99945 * 21 19 17 23 23 H 1.48499 * 109.47032 * 179.97438 * 21 19 17 24 24 H 1.48493 * 109.47111 * 300.00036 * 21 19 17 25 25 C 1.55151 * 102.94764 * 22.19258 * 14 13 12 26 26 C 1.53000 * 111.00411 * 82.56844 * 25 14 13 27 27 C 1.52997 * 111.01042 * 206.38887 * 25 14 13 28 28 C 1.47428 * 125.64716 * 179.71589 * 12 10 9 29 29 H 1.08995 * 109.47140 * 270.00356 * 1 2 3 30 30 H 1.09000 * 109.46696 * 30.00492 * 1 2 3 31 31 H 1.08999 * 109.46729 * 150.00031 * 1 2 3 32 32 H 1.08996 * 109.47474 * 180.02562 * 5 4 3 33 33 H 1.09008 * 109.47000 * 179.97438 * 6 5 4 34 34 H 1.08998 * 109.47392 * 299.99661 * 6 5 4 35 35 H 1.08997 * 109.47293 * 60.00577 * 6 5 4 36 36 H 1.09003 * 109.47386 * 59.99545 * 7 5 4 37 37 H 1.08998 * 109.47521 * 180.02562 * 7 5 4 38 38 H 1.09004 * 109.47257 * 300.00157 * 7 5 4 39 39 H 1.08998 * 109.88077 * 300.44485 * 13 12 10 40 40 H 1.08999 * 109.87804 * 61.60980 * 13 12 10 41 41 H 0.97001 * 119.99402 * 266.45072 * 16 14 13 42 42 H 0.97000 * 119.99716 * 180.02562 * 20 19 17 43 43 H 1.08999 * 109.46845 * 60.00575 * 26 25 14 44 44 H 1.09001 * 109.47140 * 180.02562 * 26 25 14 45 45 H 1.08993 * 109.47227 * 300.00966 * 26 25 14 46 46 H 1.09000 * 109.47013 * 59.99702 * 27 25 14 47 47 H 1.08997 * 109.47527 * 180.02562 * 27 25 14 48 48 H 1.09005 * 109.46984 * 299.99885 * 27 25 14 49 49 H 1.09001 * 110.36223 * 274.74282 * 28 12 10 50 50 H 1.09003 * 110.36919 * 37.06136 * 28 12 10 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 7 2.2980 1.0777 0.0000 4 6 3.5452 0.6898 0.0006 5 6 4.7441 1.6029 0.0002 6 6 4.7124 2.4855 -1.2491 7 6 4.7131 2.4858 1.2493 8 8 3.5890 -0.6461 0.0004 9 6 2.3137 -1.0993 0.0002 10 6 1.8826 -2.5018 -0.0055 11 8 0.6965 -2.7737 -0.0054 12 7 2.8003 -3.4887 -0.0106 13 6 4.2587 -3.3028 -0.0106 14 6 4.8995 -4.7063 -0.0440 15 1 5.1623 -5.0342 0.9617 16 7 6.0750 -4.7188 -0.9184 17 6 7.3007 -4.3618 -0.4230 18 1 7.4009 -4.0714 0.6124 19 6 8.4143 -4.3731 -1.2516 20 7 8.2920 -4.7265 -2.5136 21 14 10.0864 -3.8868 -0.5757 22 1 10.4562 -4.8006 0.5349 23 1 11.1030 -3.9822 -1.6540 24 1 10.0294 -2.4916 -0.0705 25 6 3.7686 -5.5909 -0.6319 26 6 3.7421 -5.5038 -2.1592 27 6 3.9119 -7.0426 -0.1707 28 6 2.5081 -4.9338 -0.0107 29 1 -0.3633 0.0001 1.0276 30 1 -0.3633 0.8900 -0.5139 31 1 -0.3633 -0.8900 -0.5138 32 1 5.6558 1.0056 0.0004 33 1 5.5794 3.1464 -1.2492 34 1 4.7346 1.8566 -2.1390 35 1 3.8008 3.0829 -1.2489 36 1 4.7355 1.8570 2.1394 37 1 5.5799 3.1466 1.2489 38 1 3.8013 3.0832 1.2495 39 1 4.5602 -2.7366 -0.8919 40 1 4.5653 -2.7767 0.8934 41 1 5.9850 -4.9799 -1.8482 42 1 9.0703 -4.7348 -3.0925 43 1 4.6968 -5.8456 -2.5592 44 1 2.9400 -6.1329 -2.5452 45 1 3.5707 -4.4707 -2.4613 46 1 3.8590 -7.0851 0.9172 47 1 3.1068 -7.6407 -0.5976 48 1 4.8723 -7.4365 -0.5034 49 1 2.3547 -5.2898 1.0080 50 1 1.6308 -5.1434 -0.6228 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000996392601.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 20:10:10 Heat of formation + Delta-G solvation = -29.619999 kcal Electronic energy + Delta-G solvation = -30592.561947 eV Core-core repulsion = 26620.656888 eV Total energy + Delta-G solvation = -3971.905059 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 335.200 amu Computer time = 1.13 seconds Orbital eigenvalues (eV) -44.61739 -41.36645 -39.43021 -36.97421 -36.34451 -35.83939 -34.62957 -32.70724 -32.08641 -29.59975 -29.07329 -28.31715 -28.15743 -27.31000 -25.89655 -25.15853 -23.22581 -22.67220 -21.45627 -21.06059 -20.19158 -19.16834 -18.51203 -18.18856 -17.40435 -17.22579 -16.97659 -16.35059 -15.79762 -15.69362 -15.51096 -15.26779 -15.00018 -14.71198 -14.37465 -14.30495 -14.20112 -14.11927 -13.89971 -13.61492 -13.45363 -13.34776 -13.12223 -12.99792 -12.83663 -12.82573 -12.75615 -12.57739 -12.36887 -12.24130 -12.16635 -12.11474 -12.01024 -11.91838 -11.85254 -11.55375 -11.39243 -11.24293 -10.92929 -10.13019 -9.68166 -9.06438 -7.93966 -5.23548 -0.36078 1.21567 1.23901 1.49867 1.51267 1.57427 1.84318 1.86815 2.56779 2.70861 3.23028 3.36366 3.55788 3.57895 3.74374 3.78227 3.88070 3.98562 3.99875 4.13656 4.21913 4.33448 4.37587 4.39565 4.40529 4.60683 4.65087 4.72344 4.73767 4.74626 4.76390 4.81510 4.84015 4.84855 4.89368 4.98065 5.02115 5.05318 5.07123 5.15859 5.18569 5.21787 5.24816 5.33771 5.40350 5.49168 5.53600 6.17698 6.27135 6.42736 6.77481 7.35439 8.06557 8.31918 9.28732 Molecular weight = 335.20amu Principal moments of inertia in cm(-1) A = 0.008712 B = 0.004696 C = 0.003256 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 3213.118408 B = 5961.343947 C = 8598.760961 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.073 4.073 2 C 0.078 3.922 3 N -0.495 5.495 4 C 0.227 3.773 5 C -0.008 4.008 6 C -0.138 4.138 7 C -0.135 4.135 8 O -0.192 6.192 9 C -0.144 4.144 10 C 0.617 3.383 11 O -0.541 6.541 12 N -0.600 5.600 13 C 0.095 3.905 14 C 0.175 3.825 15 H 0.071 0.929 16 N -0.720 5.720 17 C -0.244 4.244 18 H 0.076 0.924 19 C -0.065 4.065 20 N -0.966 5.966 21 Si 0.967 3.033 22 H -0.278 1.278 23 H -0.298 1.298 24 H -0.277 1.277 25 C -0.078 4.078 26 C -0.126 4.126 27 C -0.123 4.123 28 C 0.121 3.879 29 H 0.093 0.907 30 H 0.092 0.908 31 H 0.086 0.914 32 H 0.104 0.896 33 H 0.100 0.900 34 H 0.046 0.954 35 H 0.068 0.932 36 H 0.053 0.947 37 H 0.100 0.900 38 H 0.067 0.933 39 H 0.048 0.952 40 H 0.057 0.943 41 H 0.381 0.619 42 H 0.251 0.749 43 H 0.050 0.950 44 H 0.077 0.923 45 H 0.033 0.967 46 H 0.069 0.931 47 H 0.077 0.923 48 H 0.048 0.952 49 H 0.091 0.909 50 H 0.087 0.913 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -11.596 8.841 6.295 15.883 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.130 4.130 2 C -0.047 4.047 3 N -0.225 5.225 4 C 0.021 3.979 5 C -0.028 4.028 6 C -0.195 4.195 7 C -0.193 4.193 8 O -0.079 6.079 9 C -0.198 4.198 10 C 0.406 3.594 11 O -0.422 6.422 12 N -0.331 5.331 13 C -0.031 4.031 14 C 0.064 3.936 15 H 0.088 0.912 16 N -0.361 5.361 17 C -0.375 4.375 18 H 0.094 0.906 19 C -0.258 4.258 20 N -0.616 5.616 21 Si 0.796 3.204 22 H -0.204 1.204 23 H -0.225 1.225 24 H -0.204 1.204 25 C -0.079 4.079 26 C -0.183 4.183 27 C -0.181 4.181 28 C 0.000 4.000 29 H 0.111 0.889 30 H 0.111 0.889 31 H 0.104 0.896 32 H 0.122 0.878 33 H 0.119 0.881 34 H 0.066 0.934 35 H 0.087 0.913 36 H 0.072 0.928 37 H 0.118 0.882 38 H 0.086 0.914 39 H 0.067 0.933 40 H 0.075 0.925 41 H 0.217 0.783 42 H 0.060 0.940 43 H 0.069 0.931 44 H 0.096 0.904 45 H 0.052 0.948 46 H 0.088 0.912 47 H 0.096 0.904 48 H 0.067 0.933 49 H 0.109 0.891 50 H 0.105 0.895 Dipole moment (debyes) X Y Z Total from point charges -12.216 9.356 6.393 16.663 hybrid contribution 1.498 -0.507 -0.359 1.622 sum -10.718 8.849 6.033 15.152 Atomic orbital electron populations 1.20410 0.83590 1.04580 1.04430 1.22516 0.99409 0.86131 0.96653 1.70298 1.00464 1.30710 1.21014 1.27472 0.96578 0.79187 0.94615 1.20119 0.89335 0.93176 1.00164 1.21829 1.04484 0.99098 0.94114 1.21818 1.04446 0.99053 0.93955 1.84629 1.29709 1.24347 1.69195 1.22866 0.81848 0.96312 1.18792 1.16044 0.84731 0.81351 0.77298 1.90791 1.15533 1.82263 1.53625 1.48361 1.07137 1.07245 1.70391 1.22991 0.77919 1.01709 1.00460 1.21395 0.86688 0.90670 0.94842 0.91160 1.42634 1.02914 1.79911 1.10646 1.19563 0.86212 1.36492 0.95279 0.90561 1.25458 1.01278 1.03033 0.96037 1.69798 1.30027 1.55940 1.05845 0.85318 0.79892 0.78369 0.76824 1.20442 1.22488 1.20356 1.21995 0.93278 0.96731 0.95882 1.21576 1.01857 1.00792 0.94107 1.21611 1.02220 0.92512 1.01724 1.22564 0.98045 0.77351 1.02082 0.88870 0.88879 0.89564 0.87773 0.88113 0.93441 0.91336 0.92813 0.88154 0.91442 0.93309 0.92491 0.78307 0.94026 0.93148 0.90428 0.94761 0.91203 0.90408 0.93323 0.89108 0.89510 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.07 -1.75 9.88 71.24 0.70 -1.05 16 2 C 0.08 2.37 7.16 41.84 0.30 2.67 16 3 N -0.50 -14.64 11.26 -291.06 -3.28 -17.92 16 4 C 0.23 6.57 6.82 88.29 0.60 7.18 16 5 C -0.01 -0.18 3.39 -11.54 -0.04 -0.22 16 6 C -0.14 -2.48 9.17 71.98 0.66 -1.82 16 7 C -0.14 -2.23 9.18 71.98 0.66 -1.57 16 8 O -0.19 -6.55 8.51 -7.07 -0.06 -6.61 16 9 C -0.14 -4.88 6.98 24.05 0.17 -4.71 16 10 C 0.62 21.39 7.82 86.46 0.68 22.07 16 11 O -0.54 -19.33 15.04 -4.31 -0.06 -19.39 16 12 N -0.60 -19.89 3.31 -815.99 -2.70 -22.59 16 13 C 0.10 3.49 4.99 86.73 0.43 3.92 16 14 C 0.18 6.49 2.84 46.18 0.13 6.62 16 15 H 0.07 2.57 8.02 -2.39 -0.02 2.55 16 16 N -0.72 -33.78 5.08 -317.33 -1.61 -35.39 16 17 C -0.24 -12.69 9.98 84.03 0.84 -11.85 16 18 H 0.08 3.80 7.83 -2.91 -0.02 3.78 16 19 C -0.07 -3.56 5.50 84.86 0.47 -3.09 16 20 N -0.97 -56.59 13.06 21.65 0.28 -56.31 16 21 Si 0.97 44.02 29.55 68.60 2.03 46.04 16 22 H -0.28 -12.24 7.11 99.48 0.71 -11.53 16 23 H -0.30 -13.87 7.11 99.48 0.71 -13.16 16 24 H -0.28 -12.14 7.11 99.48 0.71 -11.43 16 25 C -0.08 -2.33 0.87 -50.71 -0.04 -2.37 16 26 C -0.13 -4.04 7.94 71.98 0.57 -3.47 16 27 C -0.12 -3.14 8.68 71.98 0.62 -2.51 16 28 C 0.12 3.38 5.85 86.93 0.51 3.89 16 29 H 0.09 1.97 8.14 -2.39 -0.02 1.95 16 30 H 0.09 1.86 8.14 -2.39 -0.02 1.84 16 31 H 0.09 2.23 6.46 -2.39 -0.02 2.21 16 32 H 0.10 2.22 8.14 -2.39 -0.02 2.20 16 33 H 0.10 1.28 8.14 -2.38 -0.02 1.26 16 34 H 0.05 0.99 8.14 -2.39 -0.02 0.97 16 35 H 0.07 1.25 8.14 -2.39 -0.02 1.23 16 36 H 0.05 0.95 8.14 -2.39 -0.02 0.93 16 37 H 0.10 1.14 8.14 -2.39 -0.02 1.12 16 38 H 0.07 1.15 8.14 -2.39 -0.02 1.13 16 39 H 0.05 2.06 7.59 -2.39 -0.02 2.04 16 40 H 0.06 2.09 7.81 -2.39 -0.02 2.07 16 41 H 0.38 19.22 5.26 -92.71 -0.49 18.74 16 42 H 0.25 14.40 8.31 -92.71 -0.77 13.63 16 43 H 0.05 1.87 6.34 -2.39 -0.02 1.85 16 44 H 0.08 2.04 8.14 -2.39 -0.02 2.02 16 45 H 0.03 1.20 7.91 -2.39 -0.02 1.18 16 46 H 0.07 1.56 8.07 -2.39 -0.02 1.55 16 47 H 0.08 1.60 8.14 -2.39 -0.02 1.58 16 48 H 0.05 1.46 8.14 -2.38 -0.02 1.44 16 49 H 0.09 2.21 7.99 -2.39 -0.02 2.19 16 50 H 0.09 2.32 7.95 -2.39 -0.02 2.30 16 Total: -1.00 -65.17 401.44 2.30 -62.86 By element: Atomic # 1 Polarization: 35.19 SS G_CDS: 0.44 Total: 35.63 kcal Atomic # 6 Polarization: 6.40 SS G_CDS: 7.26 Total: 13.66 kcal Atomic # 7 Polarization: -124.90 SS G_CDS: -7.30 Total: -132.21 kcal Atomic # 8 Polarization: -25.87 SS G_CDS: -0.13 Total: -26.00 kcal Atomic # 14 Polarization: 44.02 SS G_CDS: 2.03 Total: 46.04 kcal Total: -65.17 2.30 -62.86 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000996392601.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 33.243 kcal (2) G-P(sol) polarization free energy of solvation -65.166 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -31.923 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.303 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -62.863 kcal (6) G-S(sol) free energy of system = (1) + (5) -29.620 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.13 seconds