Wall clock time and date at job start Tue Mar 31 2020 18:59:52 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 C 1.53007 * 109.47278 * 2 1 4 4 C 1.52997 * 109.47110 * 239.99915 * 2 1 3 5 5 C 1.50705 * 109.47163 * 119.99861 * 2 1 3 6 6 O 1.34253 * 126.52350 * 241.82590 * 5 2 1 7 7 C 1.34055 * 108.22462 * 180.02562 * 6 5 2 8 8 N 1.29933 * 109.24537 * 359.72307 * 7 6 5 9 9 C 1.36072 * 108.47112 * 0.44245 * 8 7 6 10 10 C 1.47427 * 126.44558 * 179.82739 * 9 8 7 11 11 O 1.21610 * 120.00083 * 174.58695 * 10 9 8 12 12 N 1.34774 * 119.99847 * 354.57978 * 10 9 8 13 13 C 1.47426 * 125.65101 * 359.96601 * 12 10 9 14 14 C 1.54912 * 104.83208 * 204.16077 * 13 12 10 15 15 H 1.08999 * 111.00586 * 81.06731 * 14 13 12 16 16 N 1.46505 * 111.00070 * 204.87709 * 14 13 12 17 17 C 1.36941 * 119.99687 * 273.54319 * 16 14 13 18 18 H 1.07997 * 120.00098 * 0.02562 * 17 16 14 19 19 C 1.38817 * 119.99442 * 180.02562 * 17 16 14 20 20 N 1.31614 * 120.00080 * 0.02562 * 19 17 16 21 21 Si 1.86805 * 119.99594 * 180.02562 * 19 17 16 22 22 H 1.48493 * 109.46945 * 59.99940 * 21 19 17 23 23 H 1.48496 * 109.46820 * 180.02562 * 21 19 17 24 24 H 1.48502 * 109.46700 * 299.99738 * 21 19 17 25 25 C 1.55396 * 101.66723 * 323.07169 * 14 13 12 26 26 C 1.53000 * 110.69804 * 277.05108 * 25 14 13 27 27 C 1.52999 * 110.85322 * 153.69760 * 25 14 13 28 28 C 1.47026 * 125.64850 * 179.97438 * 12 10 9 29 29 H 1.09003 * 109.47415 * 305.68258 * 1 2 3 30 30 H 1.08996 * 109.47299 * 65.68587 * 1 2 3 31 31 H 1.08996 * 109.47124 * 185.68871 * 1 2 3 32 32 H 1.08995 * 109.46971 * 179.97438 * 3 2 1 33 33 H 1.08995 * 109.46598 * 300.00191 * 3 2 1 34 34 H 1.09004 * 109.46785 * 59.99634 * 3 2 1 35 35 H 1.09002 * 109.47093 * 294.05556 * 4 2 1 36 36 H 1.09000 * 109.47331 * 54.05784 * 4 2 1 37 37 H 1.09001 * 109.46836 * 174.06153 * 4 2 1 38 38 H 1.07999 * 125.37461 * 179.97438 * 7 6 5 39 39 H 1.09007 * 110.36576 * 322.99937 * 13 12 10 40 40 H 1.08998 * 110.36881 * 85.32037 * 13 12 10 41 41 H 0.97001 * 119.99823 * 93.54914 * 16 14 13 42 42 H 0.97001 * 120.00122 * 179.97438 * 20 19 17 43 43 H 1.09002 * 109.47045 * 174.81846 * 26 25 14 44 44 H 1.08998 * 109.47147 * 294.81996 * 26 25 14 45 45 H 1.09007 * 109.46930 * 54.82242 * 26 25 14 46 46 H 1.09000 * 109.47395 * 305.08767 * 27 25 14 47 47 H 1.09000 * 109.46647 * 65.09082 * 27 25 14 48 48 H 1.09007 * 109.46851 * 185.08571 * 27 25 14 49 49 H 1.09000 * 109.88148 * 298.32812 * 28 12 10 50 50 H 1.09005 * 109.87759 * 59.33839 * 28 12 10 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4426 0.0000 4 6 2.0400 -0.7213 -1.2492 5 6 2.0323 -0.7104 1.2305 6 8 2.7789 -0.1785 2.2114 7 6 3.0163 -1.1331 3.1222 8 7 2.4405 -2.2357 2.7469 9 6 1.8160 -2.0133 1.5586 10 6 1.0448 -2.9969 0.7769 11 8 0.4509 -2.6465 -0.2248 12 7 0.9980 -4.2845 1.1724 13 6 1.6685 -4.8433 2.3605 14 6 1.8417 -6.3503 2.0460 15 1 2.7110 -6.5194 1.4105 16 7 1.9350 -7.1365 3.2787 17 6 3.1475 -7.3070 3.8919 18 1 4.0348 -6.8615 3.4671 19 6 3.2359 -8.0525 5.0596 20 7 2.1545 -8.5957 5.5770 21 14 4.8898 -8.2845 5.8965 22 1 5.4437 -6.9594 6.2739 23 1 4.7155 -9.1142 7.1156 24 1 5.8248 -8.9648 4.9648 25 6 0.5262 -6.6648 1.2809 26 6 -0.6174 -6.9362 2.2605 27 6 0.7188 -7.8479 0.3301 28 6 0.2701 -5.3645 0.4902 29 1 -0.3634 0.5994 0.8347 30 1 -0.3634 0.4231 -0.9365 31 1 -0.3633 -1.0226 0.1019 32 1 3.1300 1.4425 0.0005 33 1 1.6767 1.9563 -0.8900 34 1 1.6766 1.9564 0.8900 35 1 1.7661 -1.7751 -1.1976 36 1 1.5924 -0.2726 -2.1360 37 1 3.1248 -0.6301 -1.3039 38 1 3.5916 -1.0046 4.0271 39 1 2.6406 -4.3716 2.5045 40 1 1.0462 -4.7095 3.2453 41 1 1.1379 -7.5364 3.6604 42 1 2.2163 -9.1169 6.3927 43 1 -1.5476 -7.0633 1.7067 44 1 -0.4041 -7.8435 2.8256 45 1 -0.7152 -6.0951 2.9469 46 1 1.5573 -7.6457 -0.3364 47 1 0.9231 -8.7491 0.9082 48 1 -0.1871 -7.9917 -0.2590 49 1 -0.7969 -5.1420 0.4777 50 1 0.6382 -5.4727 -0.5301 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000996499198.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 18:59:52 Heat of formation + Delta-G solvation = -11.962933 kcal Electronic energy + Delta-G solvation = -30878.593438 eV Core-core repulsion = 26907.454046 eV Total energy + Delta-G solvation = -3971.139391 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 335.200 amu Computer time = 1.16 seconds Orbital eigenvalues (eV) -44.51841 -41.28529 -39.54840 -37.73942 -35.95525 -35.79525 -34.48331 -32.64776 -30.84900 -29.14845 -28.29587 -28.22045 -28.20780 -27.84456 -25.84439 -24.67376 -23.91499 -22.83022 -21.38333 -20.20320 -19.99673 -19.15837 -18.59191 -17.87485 -17.56437 -17.10891 -16.53243 -16.35768 -16.08765 -15.65281 -15.62059 -15.36117 -14.99817 -14.84152 -14.56015 -14.37412 -14.33645 -14.18408 -13.51417 -13.39643 -13.15821 -12.98839 -12.97308 -12.84443 -12.78074 -12.64364 -12.59892 -12.53839 -12.20008 -12.14882 -12.07718 -12.02582 -11.99791 -11.79353 -11.57231 -11.44486 -11.24642 -10.92715 -10.80314 -10.02928 -9.56093 -8.99165 -7.91795 -5.20302 0.04735 1.05155 1.49650 1.51591 1.52376 1.57809 1.93821 2.19387 2.58604 3.06285 3.36700 3.40197 3.48245 3.70741 3.78236 3.89358 3.92794 3.94150 4.08205 4.16651 4.34074 4.42743 4.46058 4.50934 4.55238 4.64957 4.74936 4.77227 4.80925 4.83924 4.87981 4.93697 4.95174 4.99924 5.00372 5.04589 5.06347 5.12190 5.21315 5.22462 5.27993 5.33408 5.42237 5.44924 5.51046 5.53712 5.58310 6.29662 6.39507 6.52204 7.05950 7.37868 8.10017 8.36283 9.31095 Molecular weight = 335.20amu Principal moments of inertia in cm(-1) A = 0.013538 B = 0.003667 C = 0.003057 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2067.820925 B = 7633.863113 C = 9156.658706 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.151 4.151 2 C 0.022 3.978 3 C -0.139 4.139 4 C -0.151 4.151 5 C 0.055 3.945 6 O -0.193 6.193 7 C 0.185 3.815 8 N -0.493 5.493 9 C -0.098 4.098 10 C 0.602 3.398 11 O -0.536 6.536 12 N -0.598 5.598 13 C 0.105 3.895 14 C 0.172 3.828 15 H 0.054 0.946 16 N -0.718 5.718 17 C -0.241 4.241 18 H 0.072 0.928 19 C -0.067 4.067 20 N -0.966 5.966 21 Si 0.968 3.032 22 H -0.279 1.279 23 H -0.297 1.297 24 H -0.279 1.279 25 C -0.078 4.078 26 C -0.127 4.127 27 C -0.123 4.123 28 C 0.125 3.875 29 H 0.051 0.949 30 H 0.084 0.916 31 H 0.072 0.928 32 H 0.060 0.940 33 H 0.086 0.914 34 H 0.061 0.939 35 H 0.069 0.931 36 H 0.084 0.916 37 H 0.052 0.948 38 H 0.296 0.704 39 H 0.075 0.925 40 H 0.045 0.955 41 H 0.382 0.618 42 H 0.251 0.749 43 H 0.079 0.921 44 H 0.049 0.951 45 H 0.039 0.961 46 H 0.059 0.941 47 H 0.048 0.952 48 H 0.079 0.921 49 H 0.076 0.924 50 H 0.080 0.920 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.228 17.879 -12.463 21.907 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.208 4.208 2 C 0.021 3.979 3 C -0.196 4.196 4 C -0.208 4.208 5 C -0.002 4.002 6 O -0.079 6.079 7 C -0.044 4.044 8 N -0.222 5.222 9 C -0.217 4.217 10 C 0.392 3.608 11 O -0.417 6.417 12 N -0.329 5.329 13 C -0.021 4.021 14 C 0.061 3.939 15 H 0.072 0.928 16 N -0.359 5.359 17 C -0.373 4.373 18 H 0.090 0.910 19 C -0.260 4.260 20 N -0.616 5.616 21 Si 0.797 3.203 22 H -0.205 1.205 23 H -0.223 1.223 24 H -0.206 1.206 25 C -0.079 4.079 26 C -0.184 4.184 27 C -0.181 4.181 28 C 0.003 3.997 29 H 0.070 0.930 30 H 0.102 0.898 31 H 0.090 0.910 32 H 0.079 0.921 33 H 0.105 0.895 34 H 0.080 0.920 35 H 0.088 0.912 36 H 0.103 0.897 37 H 0.071 0.929 38 H 0.311 0.689 39 H 0.093 0.907 40 H 0.063 0.937 41 H 0.217 0.783 42 H 0.060 0.940 43 H 0.098 0.902 44 H 0.068 0.932 45 H 0.058 0.942 46 H 0.078 0.922 47 H 0.067 0.933 48 H 0.098 0.902 49 H 0.094 0.906 50 H 0.098 0.902 Dipole moment (debyes) X Y Z Total from point charges -2.345 17.531 -12.615 21.725 hybrid contribution 0.756 -0.035 1.191 1.411 sum -1.589 17.496 -11.423 20.956 Atomic orbital electron populations 1.22143 0.91748 1.04150 1.02721 1.19350 0.96631 0.95475 0.86417 1.21899 1.01470 0.92672 1.03587 1.22134 1.00381 1.02729 0.95517 1.24176 0.92724 0.91903 0.91433 1.84390 1.54202 1.41443 1.27875 1.29092 0.99503 0.79819 0.95956 1.70973 1.11752 1.28291 1.11138 1.21382 1.08884 0.94861 0.96544 1.16568 0.80344 0.80376 0.83560 1.90603 1.46766 1.78194 1.26175 1.48261 1.49705 1.07168 1.27782 1.23094 0.97008 0.95971 0.85992 1.21562 0.95705 0.88726 0.87937 0.92795 1.42492 1.07496 1.59950 1.26010 1.19530 0.87822 1.25519 1.04382 0.91005 1.25446 1.00147 1.01091 0.99279 1.69790 1.28719 1.40169 1.22969 0.85300 0.79897 0.77521 0.77570 1.20506 1.22298 1.20565 1.21844 0.95518 0.94686 0.95895 1.21642 0.97374 1.00977 0.98398 1.21650 1.02461 0.96013 0.97954 1.22124 0.96821 0.84664 0.96139 0.92962 0.89752 0.90970 0.92062 0.89545 0.92016 0.91245 0.89671 0.92898 0.68873 0.90653 0.93700 0.78268 0.94019 0.90220 0.93188 0.94171 0.92169 0.93295 0.90219 0.90604 0.90210 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -3.22 8.20 71.98 0.59 -2.63 16 2 C 0.02 0.46 0.75 -52.93 -0.04 0.42 16 3 C -0.14 -2.13 8.07 71.98 0.58 -1.55 16 4 C -0.15 -3.22 8.18 71.98 0.59 -2.63 16 5 C 0.06 1.44 5.73 25.19 0.14 1.58 16 6 O -0.19 -4.38 10.19 0.37 0.00 -4.37 16 7 C 0.18 4.08 13.19 130.52 1.72 5.80 16 8 N -0.49 -15.43 8.53 -305.14 -2.60 -18.03 16 9 C -0.10 -3.10 6.60 40.41 0.27 -2.83 16 10 C 0.60 20.22 7.26 86.66 0.63 20.85 16 11 O -0.54 -17.64 10.50 -4.06 -0.04 -17.69 16 12 N -0.60 -20.42 3.33 -815.62 -2.71 -23.13 16 13 C 0.11 4.08 5.45 86.86 0.47 4.55 16 14 C 0.17 6.82 2.93 46.47 0.14 6.96 16 15 H 0.05 2.22 8.03 -2.39 -0.02 2.20 16 16 N -0.72 -35.17 5.17 -315.96 -1.63 -36.80 16 17 C -0.24 -13.08 9.98 84.03 0.84 -12.24 16 18 H 0.07 3.80 7.83 -2.91 -0.02 3.77 16 19 C -0.07 -3.77 5.50 84.86 0.47 -3.30 16 20 N -0.97 -57.80 13.06 21.65 0.28 -57.52 16 21 Si 0.97 45.45 29.55 68.60 2.03 47.47 16 22 H -0.28 -12.65 7.11 99.48 0.71 -11.95 16 23 H -0.30 -14.08 7.11 99.48 0.71 -13.37 16 24 H -0.28 -12.69 7.11 99.48 0.71 -11.98 16 25 C -0.08 -2.49 0.86 -50.91 -0.04 -2.53 16 26 C -0.13 -4.08 7.60 71.98 0.55 -3.54 16 27 C -0.12 -3.42 8.50 71.98 0.61 -2.81 16 28 C 0.12 3.69 6.04 86.73 0.52 4.22 16 29 H 0.05 1.04 8.14 -2.39 -0.02 1.02 16 30 H 0.08 1.45 8.14 -2.39 -0.02 1.43 16 31 H 0.07 1.98 4.67 -2.39 -0.01 1.97 16 32 H 0.06 0.92 8.14 -2.39 -0.02 0.90 16 33 H 0.09 1.00 8.14 -2.39 -0.02 0.98 16 34 H 0.06 0.92 8.14 -2.39 -0.02 0.90 16 35 H 0.07 1.90 4.54 -2.39 -0.01 1.89 16 36 H 0.08 1.46 8.14 -2.39 -0.02 1.45 16 37 H 0.05 1.06 8.14 -2.39 -0.02 1.04 16 38 H 0.30 3.28 8.06 -2.91 -0.02 3.25 16 39 H 0.08 3.10 6.30 -2.38 -0.02 3.08 16 40 H 0.04 1.94 7.73 -2.39 -0.02 1.92 16 41 H 0.38 19.78 5.39 -92.71 -0.50 19.28 16 42 H 0.25 14.66 8.31 -92.71 -0.77 13.89 16 43 H 0.08 2.06 8.14 -2.39 -0.02 2.04 16 44 H 0.05 1.84 6.66 -2.39 -0.02 1.82 16 45 H 0.04 1.40 7.46 -2.38 -0.02 1.39 16 46 H 0.06 1.58 8.13 -2.39 -0.02 1.56 16 47 H 0.05 1.55 8.14 -2.39 -0.02 1.53 16 48 H 0.08 1.75 8.14 -2.38 -0.02 1.73 16 49 H 0.08 2.11 7.84 -2.39 -0.02 2.09 16 50 H 0.08 2.18 7.82 -2.38 -0.02 2.16 16 Total: -1.00 -67.56 386.68 3.80 -63.76 By element: Atomic # 1 Polarization: 35.53 SS G_CDS: 0.44 Total: 35.98 kcal Atomic # 6 Polarization: 2.29 SS G_CDS: 8.04 Total: 10.33 kcal Atomic # 7 Polarization: -128.81 SS G_CDS: -6.67 Total: -135.48 kcal Atomic # 8 Polarization: -22.02 SS G_CDS: -0.04 Total: -22.06 kcal Atomic # 14 Polarization: 45.45 SS G_CDS: 2.03 Total: 47.47 kcal Total: -67.56 3.80 -63.76 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000996499198.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 51.794 kcal (2) G-P(sol) polarization free energy of solvation -67.560 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -15.767 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.804 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -63.757 kcal (6) G-S(sol) free energy of system = (1) + (5) -11.963 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.16 seconds