Wall clock time and date at job start Tue Mar 31 2020 18:59:57 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 C 1.52999 * 109.46785 * 2 1 4 4 C 1.53003 * 109.47105 * 239.99937 * 2 1 3 5 5 C 1.50701 * 109.46957 * 120.00151 * 2 1 3 6 6 O 1.34259 * 126.52034 * 241.19910 * 5 2 1 7 7 C 1.34054 * 108.22403 * 179.87526 * 6 5 2 8 8 N 1.29930 * 109.23908 * 0.40079 * 7 6 5 9 9 C 1.36062 * 108.48529 * 359.75631 * 8 7 6 10 10 C 1.47418 * 126.45416 * 180.02562 * 9 8 7 11 11 O 1.21612 * 120.00178 * 174.38427 * 10 9 8 12 12 N 1.34770 * 119.99910 * 354.37452 * 10 9 8 13 13 C 1.47030 * 125.64795 * 0.03324 * 12 10 9 14 14 C 1.54328 * 107.26771 * 181.02054 * 13 12 10 15 15 H 1.09000 * 110.71694 * 263.82647 * 14 13 12 16 16 N 1.46502 * 110.71972 * 140.56022 * 14 13 12 17 17 C 1.36928 * 120.00444 * 86.44615 * 16 14 13 18 18 H 1.08003 * 119.99873 * 0.02562 * 17 16 14 19 19 C 1.38814 * 120.00198 * 180.02562 * 17 16 14 20 20 N 1.31617 * 120.00012 * 0.02562 * 19 17 16 21 21 Si 1.86799 * 119.99997 * 179.97438 * 19 17 16 22 22 H 1.48506 * 109.47133 * 60.00505 * 21 19 17 23 23 H 1.48505 * 109.46803 * 179.97438 * 21 19 17 24 24 H 1.48494 * 109.47398 * 300.00210 * 21 19 17 25 25 C 1.55156 * 102.94690 * 22.18991 * 14 13 12 26 26 C 1.53002 * 110.99934 * 82.57254 * 25 14 13 27 27 C 1.52995 * 111.00420 * 206.38738 * 25 14 13 28 28 C 1.47426 * 125.65106 * 179.71782 * 12 10 9 29 29 H 1.09000 * 109.47254 * 309.81776 * 1 2 3 30 30 H 1.09000 * 109.47433 * 69.82248 * 1 2 3 31 31 H 1.09001 * 109.47424 * 189.82207 * 1 2 3 32 32 H 1.09005 * 109.46996 * 180.02562 * 3 2 1 33 33 H 1.08998 * 109.47598 * 299.99575 * 3 2 1 34 34 H 1.09003 * 109.47245 * 60.00507 * 3 2 1 35 35 H 1.08994 * 109.46946 * 305.24074 * 4 2 1 36 36 H 1.09004 * 109.47038 * 65.24294 * 4 2 1 37 37 H 1.08992 * 109.47277 * 185.24014 * 4 2 1 38 38 H 1.07999 * 125.37892 * 180.13291 * 7 6 5 39 39 H 1.09000 * 109.88144 * 300.43518 * 13 12 10 40 40 H 1.08994 * 109.88199 * 61.45193 * 13 12 10 41 41 H 0.97005 * 119.99636 * 266.45421 * 16 14 13 42 42 H 0.96999 * 120.00028 * 180.02562 * 20 19 17 43 43 H 1.08998 * 109.47287 * 60.00277 * 26 25 14 44 44 H 1.09001 * 109.46715 * 180.02562 * 26 25 14 45 45 H 1.09002 * 109.47383 * 299.99541 * 26 25 14 46 46 H 1.09000 * 109.47595 * 59.99773 * 27 25 14 47 47 H 1.08998 * 109.47104 * 180.02562 * 27 25 14 48 48 H 1.09006 * 109.47264 * 299.99727 * 27 25 14 49 49 H 1.08998 * 110.37067 * 274.75527 * 28 12 10 50 50 H 1.08998 * 110.36498 * 37.07415 * 28 12 10 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0399 1.4425 0.0000 4 6 2.0400 -0.7213 -1.2493 5 6 2.0323 -0.7105 1.2305 6 8 2.7887 -0.1817 2.2056 7 6 3.0195 -1.1341 3.1203 8 7 2.4422 -2.2362 2.7458 9 6 1.8106 -2.0117 1.5617 10 6 1.0321 -2.9929 0.7844 11 8 0.4296 -2.6397 -0.2112 12 7 0.9882 -4.2814 1.1769 13 6 1.6659 -4.8418 2.3553 14 6 1.3521 -6.3524 2.3889 15 1 0.5097 -6.5566 3.0498 16 7 2.5319 -7.1179 2.7993 17 6 2.7892 -7.3189 4.1291 18 1 2.1221 -6.9135 4.8755 19 6 3.9074 -8.0437 4.5179 20 7 4.7207 -8.5373 3.6083 21 14 4.2587 -8.3174 6.3320 22 1 3.1242 -9.0487 6.9511 23 1 5.5018 -9.1162 6.4804 24 1 4.4292 -7.0055 7.0066 25 6 0.9813 -6.6634 0.9148 26 6 2.2367 -6.8847 0.0686 27 6 0.0450 -7.8703 0.8277 28 6 0.2475 -5.3613 0.4996 29 1 -0.3634 0.6581 0.7893 30 1 -0.3634 0.3545 -0.9646 31 1 -0.3634 -1.0126 0.1753 32 1 3.1300 1.4426 -0.0005 33 1 1.6767 1.9564 -0.8900 34 1 1.6766 1.9563 0.8900 35 1 1.6021 -1.7182 -1.2974 36 1 1.7554 -0.1561 -2.1368 37 1 3.1259 -0.8033 -1.2036 38 1 3.5978 -1.0067 4.0234 39 1 2.7418 -4.6884 2.2719 40 1 1.2923 -4.3630 3.2603 41 1 3.1310 -7.4822 2.1289 42 1 5.5018 -9.0441 3.8800 43 1 2.8029 -7.7246 0.4712 44 1 1.9481 -7.1004 -0.9601 45 1 2.8536 -5.9863 0.0917 46 1 -0.8702 -7.6609 1.3815 47 1 -0.1985 -8.0665 -0.2165 48 1 0.5371 -8.7436 1.2559 49 1 -0.7880 -5.3819 0.8391 50 1 0.2905 -5.2304 -0.5817 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000996499201.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 18:59:57 Heat of formation + Delta-G solvation = 7.508356 kcal Electronic energy + Delta-G solvation = -30967.853584 eV Core-core repulsion = 26997.558531 eV Total energy + Delta-G solvation = -3970.295053 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 335.200 amu Computer time = 1.02 seconds Orbital eigenvalues (eV) -43.46599 -39.93880 -38.22804 -36.74543 -34.80732 -34.03735 -32.99840 -30.76074 -29.78447 -27.59402 -27.33065 -27.29086 -26.97765 -26.62697 -23.99248 -23.41654 -22.90124 -21.30450 -20.19802 -19.05961 -18.65120 -17.39730 -17.19379 -16.78134 -16.30707 -15.77191 -15.36187 -15.06950 -14.71499 -14.42465 -14.21702 -13.98370 -13.83325 -13.58753 -13.46690 -12.97731 -12.70668 -12.46995 -12.40874 -12.28637 -12.09336 -12.05696 -11.72142 -11.56958 -11.48886 -11.17543 -11.15543 -11.10937 -11.08259 -10.95785 -10.86026 -10.52198 -10.50236 -10.30936 -10.21196 -9.85925 -9.68956 -9.56833 -8.93007 -8.91640 -8.18278 -7.02046 -5.80087 -3.09345 1.13977 2.14516 2.52455 3.20316 3.42731 3.43041 3.47609 3.48161 4.09518 4.38118 4.55689 4.62243 4.79720 4.81014 4.99139 5.05155 5.15153 5.22509 5.41358 5.52347 5.53609 5.55898 5.61875 5.63513 5.71249 5.76774 5.80605 5.83736 5.87925 5.90557 5.94548 5.99044 6.03466 6.06721 6.12765 6.19424 6.31104 6.37741 6.40681 6.41138 6.46957 6.66607 6.71501 6.73623 6.80001 7.02084 7.52753 7.68499 7.82421 8.34278 8.38896 9.50375 10.05262 10.40504 11.42273 Molecular weight = 335.20amu Principal moments of inertia in cm(-1) A = 0.013617 B = 0.003708 C = 0.003114 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2055.770276 B = 7548.500419 C = 8988.758217 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.153 4.153 2 C 0.026 3.974 3 C -0.145 4.145 4 C -0.158 4.158 5 C 0.047 3.953 6 O -0.199 6.199 7 C 0.165 3.835 8 N -0.446 5.446 9 C -0.066 4.066 10 C 0.607 3.393 11 O -0.538 6.538 12 N -0.591 5.591 13 C 0.088 3.912 14 C 0.177 3.823 15 H 0.063 0.937 16 N -0.710 5.710 17 C -0.242 4.242 18 H 0.071 0.929 19 C -0.009 4.009 20 N -0.932 5.932 21 Si 0.907 3.093 22 H -0.286 1.286 23 H -0.292 1.292 24 H -0.286 1.286 25 C -0.087 4.087 26 C -0.131 4.131 27 C -0.128 4.128 28 C 0.118 3.882 29 H 0.046 0.954 30 H 0.065 0.935 31 H 0.097 0.903 32 H 0.058 0.942 33 H 0.066 0.934 34 H 0.058 0.942 35 H 0.101 0.899 36 H 0.064 0.936 37 H 0.048 0.952 38 H 0.253 0.747 39 H 0.077 0.923 40 H 0.065 0.935 41 H 0.389 0.611 42 H 0.256 0.744 43 H 0.072 0.928 44 H 0.048 0.952 45 H 0.053 0.947 46 H 0.053 0.947 47 H 0.050 0.950 48 H 0.068 0.932 49 H 0.067 0.933 50 H 0.075 0.925 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -7.225 15.748 -7.787 18.996 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.210 4.210 2 C 0.025 3.975 3 C -0.202 4.202 4 C -0.215 4.215 5 C -0.010 4.010 6 O -0.085 6.085 7 C -0.063 4.063 8 N -0.174 5.174 9 C -0.185 4.185 10 C 0.396 3.604 11 O -0.420 6.420 12 N -0.321 5.321 13 C -0.038 4.038 14 C 0.065 3.935 15 H 0.081 0.919 16 N -0.353 5.353 17 C -0.374 4.374 18 H 0.089 0.911 19 C -0.205 4.205 20 N -0.580 5.580 21 Si 0.738 3.262 22 H -0.213 1.213 23 H -0.218 1.218 24 H -0.212 1.212 25 C -0.088 4.088 26 C -0.189 4.189 27 C -0.186 4.186 28 C -0.004 4.004 29 H 0.065 0.935 30 H 0.084 0.916 31 H 0.116 0.884 32 H 0.077 0.923 33 H 0.085 0.915 34 H 0.077 0.923 35 H 0.119 0.881 36 H 0.083 0.917 37 H 0.067 0.933 38 H 0.269 0.731 39 H 0.096 0.904 40 H 0.084 0.916 41 H 0.226 0.774 42 H 0.066 0.934 43 H 0.091 0.909 44 H 0.067 0.933 45 H 0.072 0.928 46 H 0.072 0.928 47 H 0.069 0.931 48 H 0.087 0.913 49 H 0.086 0.914 50 H 0.093 0.907 Dipole moment (debyes) X Y Z Total from point charges -7.460 15.366 -7.774 18.767 hybrid contribution 0.827 0.476 0.957 1.351 sum -6.633 15.842 -6.816 18.478 Atomic orbital electron populations 1.22190 0.91703 1.05365 1.01697 1.19170 0.96689 0.94132 0.87503 1.21934 1.01421 0.94465 1.02418 1.22230 1.00601 1.04120 0.94527 1.23777 0.93428 0.92650 0.91153 1.84352 1.54159 1.41875 1.28150 1.28118 1.01454 0.81053 0.95704 1.71010 1.09711 1.26109 1.10538 1.21384 1.07141 0.93978 0.96044 1.16340 0.80235 0.80476 0.83305 1.90573 1.46751 1.78121 1.26510 1.48288 1.48591 1.06547 1.28672 1.23346 0.98027 0.96574 0.85804 1.21281 0.91632 0.88677 0.91892 0.91882 1.42500 1.25947 1.61402 1.05421 1.19211 1.06498 1.27981 0.83665 0.91136 1.24718 0.97658 1.00706 0.97439 1.69642 1.15879 1.40716 1.31767 0.86281 0.77256 0.77691 0.85020 1.21259 1.21761 1.21230 1.22028 0.95978 0.93478 0.97358 1.21637 0.96699 1.02603 0.97930 1.21644 0.98402 0.97672 1.00894 1.22400 0.94949 0.85383 0.97690 0.93454 0.91588 0.88428 0.92275 0.91526 0.92273 0.88101 0.91682 0.93304 0.73109 0.90417 0.91649 0.77379 0.93412 0.90873 0.93331 0.92836 0.92827 0.93121 0.91314 0.91445 0.90654 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.76 8.18 37.16 0.30 -1.45 16 2 C 0.03 0.30 0.75 -155.66 -0.12 0.18 16 3 C -0.15 -1.35 8.05 37.16 0.30 -1.05 16 4 C -0.16 -1.88 8.19 37.16 0.30 -1.57 16 5 C 0.05 0.65 5.73 -35.08 -0.20 0.45 16 6 O -0.20 -2.50 10.19 6.49 0.07 -2.43 16 7 C 0.17 2.01 13.19 51.96 0.69 2.69 16 8 N -0.45 -7.11 8.87 -11.49 -0.10 -7.21 16 9 C -0.07 -1.05 6.62 -83.03 -0.55 -1.60 16 10 C 0.61 10.23 7.39 -12.53 -0.09 10.13 16 11 O -0.54 -8.95 10.32 5.27 0.05 -8.90 16 12 N -0.59 -10.00 3.31 -171.64 -0.57 -10.56 16 13 C 0.09 1.65 4.96 -3.06 -0.02 1.64 16 14 C 0.18 3.42 2.85 -66.09 -0.19 3.23 16 15 H 0.06 1.23 8.02 -51.93 -0.42 0.82 16 16 N -0.71 -16.90 5.08 -51.65 -0.26 -17.16 16 17 C -0.24 -6.46 9.98 -15.06 -0.15 -6.61 16 18 H 0.07 1.83 7.83 -52.48 -0.41 1.42 16 19 C -0.01 -0.25 5.50 -17.43 -0.10 -0.35 16 20 N -0.93 -27.27 13.06 55.49 0.72 -26.54 16 21 Si 0.91 21.87 29.55 -169.99 -5.02 16.85 16 22 H -0.29 -6.80 7.11 56.52 0.40 -6.40 16 23 H -0.29 -7.13 7.11 56.52 0.40 -6.73 16 24 H -0.29 -6.80 7.11 56.52 0.40 -6.40 16 25 C -0.09 -1.39 0.87 -152.24 -0.13 -1.53 16 26 C -0.13 -2.18 7.94 37.16 0.30 -1.88 16 27 C -0.13 -1.83 8.68 37.16 0.32 -1.51 16 28 C 0.12 1.79 5.85 -2.41 -0.01 1.77 16 29 H 0.05 0.50 8.12 -51.93 -0.42 0.08 16 30 H 0.07 0.66 8.12 -51.93 -0.42 0.24 16 31 H 0.10 1.37 4.67 -51.93 -0.24 1.12 16 32 H 0.06 0.55 8.14 -51.93 -0.42 0.13 16 33 H 0.07 0.52 8.14 -51.93 -0.42 0.09 16 34 H 0.06 0.53 8.14 -51.93 -0.42 0.11 16 35 H 0.10 1.44 4.64 -51.93 -0.24 1.20 16 36 H 0.06 0.64 8.14 -51.93 -0.42 0.22 16 37 H 0.05 0.58 8.14 -51.93 -0.42 0.15 16 38 H 0.25 1.83 8.06 -52.49 -0.42 1.41 16 39 H 0.08 1.66 7.65 -51.93 -0.40 1.27 16 40 H 0.07 1.27 7.63 -51.93 -0.40 0.87 16 41 H 0.39 9.77 5.26 -40.82 -0.21 9.56 16 42 H 0.26 7.31 8.31 -40.82 -0.34 6.97 16 43 H 0.07 1.36 6.34 -51.93 -0.33 1.03 16 44 H 0.05 0.69 8.14 -51.93 -0.42 0.27 16 45 H 0.05 0.95 7.91 -51.93 -0.41 0.54 16 46 H 0.05 0.70 8.07 -51.93 -0.42 0.28 16 47 H 0.05 0.62 8.14 -51.93 -0.42 0.20 16 48 H 0.07 1.10 8.14 -51.93 -0.42 0.68 16 49 H 0.07 0.94 7.99 -51.93 -0.41 0.53 16 50 H 0.08 1.10 7.95 -51.93 -0.41 0.69 16 LS Contribution 388.13 15.07 5.85 5.85 Total: -1.00 -30.52 388.13 -6.70 -37.22 By element: Atomic # 1 Polarization: 18.43 SS G_CDS: -8.09 Total: 10.34 kcal Atomic # 6 Polarization: 1.89 SS G_CDS: 0.65 Total: 2.55 kcal Atomic # 7 Polarization: -61.27 SS G_CDS: -0.21 Total: -61.47 kcal Atomic # 8 Polarization: -11.45 SS G_CDS: 0.12 Total: -11.33 kcal Atomic # 14 Polarization: 21.87 SS G_CDS: -5.02 Total: 16.85 kcal Total LS contribution 5.85 Total: 5.85 kcal Total: -30.52 -6.70 -37.22 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000996499201.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 44.725 kcal (2) G-P(sol) polarization free energy of solvation -30.521 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 14.204 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.696 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.216 kcal (6) G-S(sol) free energy of system = (1) + (5) 7.508 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.02 seconds