Wall clock time and date at job start Tue Mar 31 2020 18:59:56 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 C 1.52999 * 109.46785 * 2 1 4 4 C 1.53003 * 109.47105 * 239.99937 * 2 1 3 5 5 C 1.50701 * 109.46957 * 120.00151 * 2 1 3 6 6 O 1.34259 * 126.52034 * 241.19910 * 5 2 1 7 7 C 1.34054 * 108.22403 * 179.87526 * 6 5 2 8 8 N 1.29930 * 109.23908 * 0.40079 * 7 6 5 9 9 C 1.36062 * 108.48529 * 359.75631 * 8 7 6 10 10 C 1.47418 * 126.45416 * 180.02562 * 9 8 7 11 11 O 1.21612 * 120.00178 * 174.38427 * 10 9 8 12 12 N 1.34770 * 119.99910 * 354.37452 * 10 9 8 13 13 C 1.47030 * 125.64795 * 0.03324 * 12 10 9 14 14 C 1.54328 * 107.26771 * 181.02054 * 13 12 10 15 15 H 1.09000 * 110.71694 * 263.82647 * 14 13 12 16 16 N 1.46502 * 110.71972 * 140.56022 * 14 13 12 17 17 C 1.36928 * 120.00444 * 86.44615 * 16 14 13 18 18 H 1.08003 * 119.99873 * 0.02562 * 17 16 14 19 19 C 1.38814 * 120.00198 * 180.02562 * 17 16 14 20 20 N 1.31617 * 120.00012 * 0.02562 * 19 17 16 21 21 Si 1.86799 * 119.99997 * 179.97438 * 19 17 16 22 22 H 1.48506 * 109.47133 * 60.00505 * 21 19 17 23 23 H 1.48505 * 109.46803 * 179.97438 * 21 19 17 24 24 H 1.48494 * 109.47398 * 300.00210 * 21 19 17 25 25 C 1.55156 * 102.94690 * 22.18991 * 14 13 12 26 26 C 1.53002 * 110.99934 * 82.57254 * 25 14 13 27 27 C 1.52995 * 111.00420 * 206.38738 * 25 14 13 28 28 C 1.47426 * 125.65106 * 179.71782 * 12 10 9 29 29 H 1.09000 * 109.47254 * 309.81776 * 1 2 3 30 30 H 1.09000 * 109.47433 * 69.82248 * 1 2 3 31 31 H 1.09001 * 109.47424 * 189.82207 * 1 2 3 32 32 H 1.09005 * 109.46996 * 180.02562 * 3 2 1 33 33 H 1.08998 * 109.47598 * 299.99575 * 3 2 1 34 34 H 1.09003 * 109.47245 * 60.00507 * 3 2 1 35 35 H 1.08994 * 109.46946 * 305.24074 * 4 2 1 36 36 H 1.09004 * 109.47038 * 65.24294 * 4 2 1 37 37 H 1.08992 * 109.47277 * 185.24014 * 4 2 1 38 38 H 1.07999 * 125.37892 * 180.13291 * 7 6 5 39 39 H 1.09000 * 109.88144 * 300.43518 * 13 12 10 40 40 H 1.08994 * 109.88199 * 61.45193 * 13 12 10 41 41 H 0.97005 * 119.99636 * 266.45421 * 16 14 13 42 42 H 0.96999 * 120.00028 * 180.02562 * 20 19 17 43 43 H 1.08998 * 109.47287 * 60.00277 * 26 25 14 44 44 H 1.09001 * 109.46715 * 180.02562 * 26 25 14 45 45 H 1.09002 * 109.47383 * 299.99541 * 26 25 14 46 46 H 1.09000 * 109.47595 * 59.99773 * 27 25 14 47 47 H 1.08998 * 109.47104 * 180.02562 * 27 25 14 48 48 H 1.09006 * 109.47264 * 299.99727 * 27 25 14 49 49 H 1.08998 * 110.37067 * 274.75527 * 28 12 10 50 50 H 1.08998 * 110.36498 * 37.07415 * 28 12 10 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0399 1.4425 0.0000 4 6 2.0400 -0.7213 -1.2493 5 6 2.0323 -0.7105 1.2305 6 8 2.7887 -0.1817 2.2056 7 6 3.0195 -1.1341 3.1203 8 7 2.4422 -2.2362 2.7458 9 6 1.8106 -2.0117 1.5617 10 6 1.0321 -2.9929 0.7844 11 8 0.4296 -2.6397 -0.2112 12 7 0.9882 -4.2814 1.1769 13 6 1.6659 -4.8418 2.3553 14 6 1.3521 -6.3524 2.3889 15 1 0.5097 -6.5566 3.0498 16 7 2.5319 -7.1179 2.7993 17 6 2.7892 -7.3189 4.1291 18 1 2.1221 -6.9135 4.8755 19 6 3.9074 -8.0437 4.5179 20 7 4.7207 -8.5373 3.6083 21 14 4.2587 -8.3174 6.3320 22 1 3.1242 -9.0487 6.9511 23 1 5.5018 -9.1162 6.4804 24 1 4.4292 -7.0055 7.0066 25 6 0.9813 -6.6634 0.9148 26 6 2.2367 -6.8847 0.0686 27 6 0.0450 -7.8703 0.8277 28 6 0.2475 -5.3613 0.4996 29 1 -0.3634 0.6581 0.7893 30 1 -0.3634 0.3545 -0.9646 31 1 -0.3634 -1.0126 0.1753 32 1 3.1300 1.4426 -0.0005 33 1 1.6767 1.9564 -0.8900 34 1 1.6766 1.9563 0.8900 35 1 1.6021 -1.7182 -1.2974 36 1 1.7554 -0.1561 -2.1368 37 1 3.1259 -0.8033 -1.2036 38 1 3.5978 -1.0067 4.0234 39 1 2.7418 -4.6884 2.2719 40 1 1.2923 -4.3630 3.2603 41 1 3.1310 -7.4822 2.1289 42 1 5.5018 -9.0441 3.8800 43 1 2.8029 -7.7246 0.4712 44 1 1.9481 -7.1004 -0.9601 45 1 2.8536 -5.9863 0.0917 46 1 -0.8702 -7.6609 1.3815 47 1 -0.1985 -8.0665 -0.2165 48 1 0.5371 -8.7436 1.2559 49 1 -0.7880 -5.3819 0.8391 50 1 0.2905 -5.2304 -0.5817 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000996499201.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 18:59:56 Heat of formation + Delta-G solvation = -12.119835 kcal Electronic energy + Delta-G solvation = -30968.704726 eV Core-core repulsion = 26997.558531 eV Total energy + Delta-G solvation = -3971.146195 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 335.200 amu Computer time = 1.10 seconds Orbital eigenvalues (eV) -44.51142 -41.28341 -39.52365 -37.73857 -35.93973 -35.78224 -34.43835 -32.64045 -30.84979 -29.16444 -28.32094 -28.23416 -28.19878 -27.83533 -25.82740 -24.68438 -23.90953 -22.78758 -21.33385 -20.26162 -19.97829 -19.12871 -18.60133 -17.85383 -17.55388 -17.13347 -16.54526 -16.35424 -16.08635 -15.73989 -15.57384 -15.42493 -15.05956 -14.72686 -14.62400 -14.39389 -14.24826 -13.88595 -13.59536 -13.43056 -13.15331 -13.02406 -12.97443 -12.82715 -12.80886 -12.65317 -12.60363 -12.47031 -12.17775 -12.15500 -12.11283 -12.02631 -11.99040 -11.79867 -11.50241 -11.47248 -11.31302 -10.92637 -10.80751 -10.01787 -9.52393 -9.00811 -7.91455 -5.19952 0.04791 1.05908 1.49748 1.51747 1.52631 1.57811 1.95446 2.20612 2.58914 3.06901 3.37174 3.40404 3.48423 3.70398 3.81832 3.86575 3.92511 3.93759 4.08457 4.19039 4.32709 4.44322 4.47831 4.50754 4.55491 4.65210 4.73383 4.77074 4.80820 4.85056 4.86503 4.94443 4.97831 4.99615 5.02295 5.05045 5.07227 5.15015 5.18839 5.22641 5.27932 5.30880 5.43273 5.45103 5.51071 5.56926 5.58534 6.29854 6.40891 6.52872 7.07343 7.37966 8.10765 8.35940 9.31578 Molecular weight = 335.20amu Principal moments of inertia in cm(-1) A = 0.013617 B = 0.003708 C = 0.003114 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2055.770276 B = 7548.500419 C = 8988.758217 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.148 4.148 2 C 0.022 3.978 3 C -0.139 4.139 4 C -0.154 4.154 5 C 0.053 3.947 6 O -0.194 6.194 7 C 0.182 3.818 8 N -0.492 5.492 9 C -0.099 4.099 10 C 0.602 3.398 11 O -0.537 6.537 12 N -0.597 5.597 13 C 0.114 3.886 14 C 0.170 3.830 15 H 0.063 0.937 16 N -0.720 5.720 17 C -0.240 4.240 18 H 0.075 0.925 19 C -0.069 4.069 20 N -0.968 5.968 21 Si 0.968 3.032 22 H -0.278 1.278 23 H -0.298 1.298 24 H -0.280 1.280 25 C -0.079 4.079 26 C -0.123 4.123 27 C -0.123 4.123 28 C 0.122 3.878 29 H 0.055 0.945 30 H 0.082 0.918 31 H 0.071 0.929 32 H 0.058 0.942 33 H 0.086 0.914 34 H 0.062 0.938 35 H 0.075 0.925 36 H 0.087 0.913 37 H 0.043 0.957 38 H 0.296 0.704 39 H 0.046 0.954 40 H 0.055 0.945 41 H 0.380 0.620 42 H 0.250 0.750 43 H 0.047 0.953 44 H 0.076 0.924 45 H 0.033 0.967 46 H 0.067 0.933 47 H 0.077 0.923 48 H 0.046 0.954 49 H 0.085 0.915 50 H 0.085 0.915 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -8.423 17.624 -8.131 21.159 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.205 4.205 2 C 0.022 3.978 3 C -0.196 4.196 4 C -0.211 4.211 5 C -0.004 4.004 6 O -0.080 6.080 7 C -0.046 4.046 8 N -0.220 5.220 9 C -0.217 4.217 10 C 0.392 3.608 11 O -0.418 6.418 12 N -0.328 5.328 13 C -0.012 4.012 14 C 0.060 3.940 15 H 0.081 0.919 16 N -0.361 5.361 17 C -0.371 4.371 18 H 0.093 0.907 19 C -0.261 4.261 20 N -0.618 5.618 21 Si 0.797 3.203 22 H -0.204 1.204 23 H -0.224 1.224 24 H -0.206 1.206 25 C -0.080 4.080 26 C -0.181 4.181 27 C -0.180 4.180 28 C 0.001 3.999 29 H 0.074 0.926 30 H 0.101 0.899 31 H 0.089 0.911 32 H 0.077 0.923 33 H 0.105 0.895 34 H 0.081 0.919 35 H 0.094 0.906 36 H 0.106 0.894 37 H 0.063 0.937 38 H 0.311 0.689 39 H 0.065 0.935 40 H 0.073 0.927 41 H 0.216 0.784 42 H 0.059 0.941 43 H 0.066 0.934 44 H 0.095 0.905 45 H 0.052 0.948 46 H 0.086 0.914 47 H 0.096 0.904 48 H 0.065 0.935 49 H 0.103 0.897 50 H 0.103 0.897 Dipole moment (debyes) X Y Z Total from point charges -8.715 17.272 -8.134 20.987 hybrid contribution 1.169 -0.002 1.021 1.552 sum -7.546 17.270 -7.113 20.144 Atomic orbital electron populations 1.22119 0.91483 1.03914 1.02968 1.19350 0.96818 0.95406 0.86276 1.21902 1.01387 0.92691 1.03656 1.22170 1.00111 1.03116 0.95703 1.24195 0.92514 0.92087 0.91613 1.84386 1.53856 1.41735 1.28014 1.29063 0.99696 0.79894 0.95933 1.70962 1.11544 1.28146 1.11349 1.21421 1.08633 0.94862 0.96810 1.16550 0.80286 0.80509 0.83445 1.90582 1.46702 1.78104 1.26424 1.48271 1.49033 1.07149 1.28345 1.22768 0.96158 0.95956 0.86336 1.21451 0.89954 0.88413 0.94216 0.91873 1.42607 1.27124 1.62013 1.04383 1.19569 1.06019 1.26530 0.85028 0.90749 1.25454 0.97980 1.01476 1.01197 1.69799 1.16410 1.42164 1.33459 0.85294 0.76772 0.77563 0.80621 1.20423 1.22434 1.20575 1.21985 0.96251 0.95116 0.94638 1.21550 0.96443 1.00550 0.99551 1.21606 0.98074 0.95590 1.02769 1.22470 0.95329 0.83971 0.98173 0.92643 0.89869 0.91066 0.92294 0.89490 0.91876 0.90631 0.89404 0.93736 0.68941 0.93549 0.92662 0.78413 0.94102 0.93365 0.90491 0.94781 0.91391 0.90428 0.93487 0.89712 0.89652 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -3.15 8.18 71.98 0.59 -2.56 16 2 C 0.02 0.48 0.75 -52.93 -0.04 0.44 16 3 C -0.14 -2.22 8.05 71.98 0.58 -1.64 16 4 C -0.15 -3.46 8.19 71.98 0.59 -2.87 16 5 C 0.05 1.43 5.73 25.19 0.14 1.58 16 6 O -0.19 -4.57 10.19 0.32 0.00 -4.57 16 7 C 0.18 4.21 13.19 130.52 1.72 5.93 16 8 N -0.49 -15.78 8.87 -305.16 -2.71 -18.48 16 9 C -0.10 -3.18 6.62 40.41 0.27 -2.91 16 10 C 0.60 20.41 7.39 86.66 0.64 21.05 16 11 O -0.54 -17.72 10.32 -4.07 -0.04 -17.76 16 12 N -0.60 -20.31 3.31 -815.21 -2.70 -23.01 16 13 C 0.11 4.40 4.96 86.73 0.43 4.83 16 14 C 0.17 6.67 2.85 46.18 0.13 6.80 16 15 H 0.06 2.48 8.02 -2.39 -0.02 2.46 16 16 N -0.72 -35.25 5.08 -317.32 -1.61 -36.86 16 17 C -0.24 -12.99 9.98 84.04 0.84 -12.15 16 18 H 0.07 3.89 7.83 -2.91 -0.02 3.87 16 19 C -0.07 -3.86 5.50 84.86 0.47 -3.40 16 20 N -0.97 -58.24 13.06 21.65 0.28 -57.95 16 21 Si 0.97 45.53 29.55 68.60 2.03 47.55 16 22 H -0.28 -12.59 7.11 99.48 0.71 -11.89 16 23 H -0.30 -14.20 7.11 99.48 0.71 -13.50 16 24 H -0.28 -12.72 7.11 99.48 0.71 -12.01 16 25 C -0.08 -2.48 0.87 -50.71 -0.04 -2.52 16 26 C -0.12 -4.13 7.94 71.98 0.57 -3.55 16 27 C -0.12 -3.31 8.68 71.98 0.62 -2.69 16 28 C 0.12 3.55 5.85 86.93 0.51 4.06 16 29 H 0.05 1.06 8.12 -2.39 -0.02 1.05 16 30 H 0.08 1.45 8.12 -2.39 -0.02 1.43 16 31 H 0.07 1.94 4.67 -2.39 -0.01 1.93 16 32 H 0.06 0.95 8.14 -2.38 -0.02 0.93 16 33 H 0.09 1.04 8.14 -2.39 -0.02 1.02 16 34 H 0.06 0.96 8.14 -2.39 -0.02 0.94 16 35 H 0.08 2.12 4.64 -2.39 -0.01 2.11 16 36 H 0.09 1.53 8.14 -2.38 -0.02 1.51 16 37 H 0.04 1.01 8.14 -2.39 -0.02 0.99 16 38 H 0.30 3.55 8.06 -2.91 -0.02 3.53 16 39 H 0.05 2.08 7.65 -2.39 -0.02 2.06 16 40 H 0.05 2.21 7.63 -2.39 -0.02 2.19 16 41 H 0.38 19.90 5.26 -92.70 -0.49 19.42 16 42 H 0.25 14.71 8.31 -92.71 -0.77 13.94 16 43 H 0.05 1.86 6.34 -2.39 -0.02 1.84 16 44 H 0.08 2.10 8.14 -2.39 -0.02 2.08 16 45 H 0.03 1.24 7.91 -2.39 -0.02 1.22 16 46 H 0.07 1.63 8.07 -2.39 -0.02 1.61 16 47 H 0.08 1.69 8.14 -2.39 -0.02 1.67 16 48 H 0.05 1.48 8.14 -2.38 -0.02 1.46 16 49 H 0.08 2.19 7.99 -2.39 -0.02 2.17 16 50 H 0.09 2.34 7.95 -2.39 -0.02 2.32 16 Total: -1.00 -68.09 388.13 3.73 -64.36 By element: Atomic # 1 Polarization: 35.89 SS G_CDS: 0.45 Total: 36.35 kcal Atomic # 6 Polarization: 2.37 SS G_CDS: 8.02 Total: 10.39 kcal Atomic # 7 Polarization: -129.58 SS G_CDS: -6.73 Total: -136.31 kcal Atomic # 8 Polarization: -22.29 SS G_CDS: -0.04 Total: -22.33 kcal Atomic # 14 Polarization: 45.53 SS G_CDS: 2.03 Total: 47.55 kcal Total: -68.09 3.73 -64.36 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000996499201.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 52.236 kcal (2) G-P(sol) polarization free energy of solvation -68.085 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -15.850 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.730 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -64.355 kcal (6) G-S(sol) free energy of system = (1) + (5) -12.120 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.10 seconds