Wall clock time and date at job start Tue Mar 31 2020 20:01:11 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50707 * 1 3 3 N 1.33688 * 126.27989 * 2 1 4 4 C 1.30613 * 108.99785 * 180.26055 * 3 2 1 5 5 C 1.50699 * 125.42105 * 179.79029 * 4 3 2 6 6 C 1.53001 * 109.47395 * 89.97604 * 5 4 3 7 7 C 1.52996 * 109.47515 * 174.99954 * 6 5 4 8 8 C 1.53002 * 109.46839 * 294.99819 * 6 5 4 9 9 O 1.33665 * 109.15285 * 359.76413 * 4 3 2 10 10 C 1.35336 * 107.68609 * 0.02562 * 9 4 3 11 11 C 1.46721 * 126.64634 * 179.97438 * 10 9 4 12 12 O 1.21688 * 120.00060 * 172.48887 * 11 10 9 13 13 N 1.34771 * 119.99931 * 352.49278 * 11 10 9 14 14 C 1.46928 * 120.63642 * 172.84578 * 13 11 10 15 15 C 1.53189 * 108.89664 * 126.29638 * 14 13 11 16 16 C 1.53351 * 109.15002 * 54.58101 * 15 14 13 17 17 N 1.46496 * 109.41858 * 178.67587 * 16 15 14 18 18 C 1.36937 * 119.99709 * 275.12413 * 17 16 15 19 19 H 1.08000 * 120.00496 * 0.02562 * 18 17 16 20 20 C 1.38819 * 119.99842 * 179.97438 * 18 17 16 21 21 N 1.31620 * 119.99789 * 0.02562 * 20 18 17 22 22 Si 1.86800 * 119.99834 * 180.02562 * 20 18 17 23 23 H 1.48491 * 109.47082 * 60.00648 * 22 20 18 24 24 H 1.48498 * 109.46903 * 180.02562 * 22 20 18 25 25 H 1.48503 * 109.47349 * 300.00261 * 22 20 18 26 26 C 1.53046 * 109.60678 * 298.71517 * 16 15 14 27 27 C 1.46934 * 120.63057 * 352.82138 * 13 11 10 28 28 H 1.08999 * 109.46798 * 270.13905 * 1 2 3 29 29 H 1.09004 * 109.46366 * 30.13036 * 1 2 3 30 30 H 1.08994 * 109.47683 * 150.13204 * 1 2 3 31 31 H 1.09002 * 109.47083 * 209.97165 * 5 4 3 32 32 H 1.09003 * 109.47657 * 329.97159 * 5 4 3 33 33 H 1.09002 * 109.47234 * 54.99344 * 6 5 4 34 34 H 1.09002 * 109.47368 * 59.99471 * 7 6 5 35 35 H 1.09003 * 109.47510 * 180.02562 * 7 6 5 36 36 H 1.09008 * 109.46840 * 299.99634 * 7 6 5 37 37 H 1.09002 * 109.47235 * 179.97438 * 8 6 5 38 38 H 1.09002 * 109.46820 * 299.99778 * 8 6 5 39 39 H 1.09005 * 109.47205 * 59.99686 * 8 6 5 40 40 H 1.09004 * 109.58608 * 246.16002 * 14 13 11 41 41 H 1.09004 * 109.58234 * 6.43864 * 14 13 11 42 42 H 1.09005 * 109.49511 * 174.66229 * 15 14 13 43 43 H 1.09002 * 109.49756 * 294.75689 * 15 14 13 44 44 H 1.09002 * 109.41675 * 58.74593 * 16 15 14 45 45 H 0.96999 * 120.00086 * 95.12561 * 17 16 15 46 46 H 0.97003 * 119.99730 * 179.97438 * 21 20 18 47 47 H 1.09000 * 109.49211 * 301.42276 * 26 16 15 48 48 H 1.08996 * 109.52240 * 181.34115 * 26 16 15 49 49 H 1.08993 * 109.58702 * 353.42179 * 27 13 11 50 50 H 1.09004 * 109.58411 * 113.70226 * 27 13 11 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5071 0.0000 0.0000 3 7 2.2981 1.0777 0.0000 4 6 3.5453 0.6897 -0.0056 5 6 4.7441 1.6029 -0.0120 6 6 5.1563 1.9136 1.4282 7 6 6.4455 2.7375 1.4234 8 6 4.0452 2.7091 2.1163 9 8 3.5889 -0.6462 -0.0042 10 6 2.3137 -1.0993 0.0020 11 6 1.8825 -2.5017 0.0052 12 8 0.7057 -2.7762 0.1485 13 7 2.7899 -3.4860 -0.1507 14 6 2.4012 -4.8943 0.0055 15 6 2.8197 -5.6666 -1.2494 16 6 4.3172 -5.4488 -1.4981 17 7 4.7306 -6.2105 -2.6792 18 6 5.0737 -7.5305 -2.5570 19 1 5.0392 -8.0102 -1.5900 20 6 5.4650 -8.2525 -3.6763 21 7 5.5067 -7.6680 -4.8548 22 14 5.9324 -10.0533 -3.5096 23 1 4.7763 -10.8174 -2.9761 24 1 6.3102 -10.5919 -4.8409 25 1 7.0827 -10.1822 -2.5794 26 6 4.5880 -3.9605 -1.7306 27 6 4.1866 -3.1712 -0.4807 28 1 -0.3633 0.0025 1.0277 29 1 -0.3632 0.8889 -0.5159 30 1 -0.3634 -0.8911 -0.5117 31 1 5.5701 1.1144 -0.5290 32 1 4.4916 2.5304 -0.5259 33 1 5.3230 0.9812 1.9677 34 1 6.2788 3.6699 0.8839 35 1 6.7394 2.9585 2.4495 36 1 7.2371 2.1707 0.9331 37 1 4.3387 2.9302 3.1426 38 1 3.8785 3.6415 1.5769 39 1 3.1267 2.1222 2.1198 40 1 2.9001 -5.3164 0.8779 41 1 1.3209 -4.9630 0.1336 42 1 2.6221 -6.7289 -1.1056 43 1 2.2524 -5.3033 -2.1064 44 1 4.8819 -5.7893 -0.6302 45 1 4.7613 -5.7798 -3.5478 46 1 5.7804 -8.1724 -5.6369 47 1 4.0041 -3.6134 -2.5831 48 1 5.6488 -3.8103 -1.9308 49 1 4.2842 -2.1033 -0.6759 50 1 4.8309 -3.4506 0.3530 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000997076813.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 20:01:11 Heat of formation + Delta-G solvation = -12.709740 kcal Electronic energy + Delta-G solvation = -29649.132308 eV Core-core repulsion = 25677.960533 eV Total energy + Delta-G solvation = -3971.171775 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 335.200 amu Computer time = 1.01 seconds Orbital eigenvalues (eV) -43.69062 -39.94471 -37.54400 -36.99071 -35.55673 -34.45689 -32.29560 -31.90816 -30.84010 -29.44735 -28.87796 -27.51876 -27.36505 -24.91084 -23.35936 -22.90821 -22.16139 -21.80550 -20.65012 -20.39565 -19.38525 -17.62083 -17.19337 -16.95471 -16.47697 -16.04654 -15.66682 -15.02636 -14.89006 -14.51673 -14.32972 -14.12001 -13.84713 -13.62958 -13.52380 -13.38206 -13.30342 -13.11788 -12.95821 -12.68592 -12.49244 -12.38123 -12.18290 -12.03732 -11.63478 -11.53423 -11.42591 -11.19400 -11.06551 -10.99882 -10.92801 -10.87539 -10.75247 -10.46049 -10.30090 -10.16486 -9.84790 -9.69299 -9.04943 -8.93113 -8.55304 -7.01358 -5.80525 -3.09967 0.66376 2.14873 2.21950 2.92452 3.05655 3.41250 3.45922 3.46804 3.59872 4.30830 4.37362 4.44143 4.54768 4.55148 4.63048 4.94008 5.04572 5.09711 5.17534 5.20288 5.27829 5.28703 5.33179 5.35591 5.43901 5.48173 5.50887 5.52920 5.53302 5.63026 5.69141 5.71238 5.72669 5.82869 5.84674 5.87345 5.96068 6.02739 6.15412 6.16983 6.23016 6.39419 6.49471 6.51954 6.85306 6.99964 7.24599 7.44997 7.65232 7.96395 8.37626 9.48844 10.05587 10.40374 11.41955 Molecular weight = 335.20amu Principal moments of inertia in cm(-1) A = 0.015624 B = 0.002594 C = 0.002335 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1791.678219 B =10789.873407 C =11986.891022 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.077 4.077 2 C 0.078 3.922 3 N -0.484 5.484 4 C 0.216 3.784 5 C -0.026 4.026 6 C -0.094 4.094 7 C -0.146 4.146 8 C -0.150 4.150 9 O -0.179 6.179 10 C -0.112 4.112 11 C 0.605 3.395 12 O -0.522 6.522 13 N -0.594 5.594 14 C 0.113 3.887 15 C -0.150 4.150 16 C 0.179 3.821 17 N -0.724 5.724 18 C -0.241 4.241 19 H 0.070 0.930 20 C -0.013 4.013 21 N -0.933 5.933 22 Si 0.907 3.093 23 H -0.286 1.286 24 H -0.291 1.291 25 H -0.286 1.286 26 C -0.138 4.138 27 C 0.101 3.899 28 H 0.081 0.919 29 H 0.075 0.925 30 H 0.092 0.908 31 H 0.099 0.901 32 H 0.109 0.891 33 H 0.076 0.924 34 H 0.059 0.941 35 H 0.060 0.940 36 H 0.059 0.941 37 H 0.055 0.945 38 H 0.059 0.941 39 H 0.059 0.941 40 H 0.068 0.932 41 H 0.088 0.912 42 H 0.078 0.922 43 H 0.060 0.940 44 H 0.049 0.951 45 H 0.384 0.616 46 H 0.256 0.744 47 H 0.063 0.937 48 H 0.079 0.921 49 H 0.095 0.905 50 H 0.072 0.928 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.248 21.837 13.312 25.673 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.134 4.134 2 C -0.046 4.046 3 N -0.213 5.213 4 C 0.011 3.989 5 C -0.064 4.064 6 C -0.113 4.113 7 C -0.204 4.204 8 C -0.207 4.207 9 O -0.067 6.067 10 C -0.166 4.166 11 C 0.392 3.608 12 O -0.401 6.401 13 N -0.326 5.326 14 C -0.009 4.009 15 C -0.191 4.191 16 C 0.069 3.931 17 N -0.364 5.364 18 C -0.372 4.372 19 H 0.088 0.912 20 C -0.209 4.209 21 N -0.581 5.581 22 Si 0.738 3.262 23 H -0.212 1.212 24 H -0.217 1.217 25 H -0.213 1.213 26 C -0.177 4.177 27 C -0.021 4.021 28 H 0.099 0.901 29 H 0.094 0.906 30 H 0.111 0.889 31 H 0.117 0.883 32 H 0.127 0.873 33 H 0.094 0.906 34 H 0.078 0.922 35 H 0.080 0.920 36 H 0.079 0.921 37 H 0.074 0.926 38 H 0.078 0.922 39 H 0.078 0.922 40 H 0.087 0.913 41 H 0.107 0.893 42 H 0.096 0.904 43 H 0.079 0.921 44 H 0.067 0.933 45 H 0.217 0.783 46 H 0.066 0.934 47 H 0.082 0.918 48 H 0.097 0.903 49 H 0.113 0.887 50 H 0.090 0.910 Dipole moment (debyes) X Y Z Total from point charges -2.921 22.058 13.410 25.979 hybrid contribution 0.602 -1.635 -0.367 1.781 sum -2.319 20.423 13.043 24.343 Atomic orbital electron populations 1.20338 0.85385 1.04129 1.03593 1.22043 0.98268 0.86462 0.97865 1.70346 1.00305 1.30960 1.19727 1.26573 0.95579 0.80031 0.96739 1.20395 0.90288 0.96302 0.99371 1.21134 0.96259 1.00091 0.93803 1.21824 0.96124 0.99968 1.02443 1.21891 0.98254 1.00415 1.00137 1.84654 1.29528 1.23023 1.69481 1.22952 0.81174 0.96242 1.16273 1.16465 0.85407 0.81339 0.77565 1.90834 1.15930 1.81600 1.51726 1.48058 1.09956 1.06804 1.67751 1.21813 1.01562 0.78344 0.99138 1.22737 1.00365 1.00170 0.95858 1.20232 0.91890 0.89154 0.91868 1.42412 1.79752 1.09084 1.05134 1.19186 1.37398 0.86721 0.93915 0.91192 1.24755 1.02379 0.98285 0.95453 1.69653 1.54095 1.35971 0.98359 0.86272 0.78315 0.85058 0.76561 1.21235 1.21697 1.21256 1.22202 1.02022 0.96900 0.96566 1.22169 0.80817 1.00898 0.98251 0.90063 0.90582 0.88914 0.88310 0.87298 0.90586 0.92191 0.92050 0.92145 0.92598 0.92161 0.92188 0.91337 0.89331 0.90394 0.92128 0.93327 0.78271 0.93420 0.91796 0.90281 0.88733 0.90997 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.08 -0.86 9.80 36.01 0.35 -0.51 16 2 C 0.08 1.02 7.16 -82.46 -0.59 0.43 16 3 N -0.48 -5.96 10.52 -7.07 -0.07 -6.03 16 4 C 0.22 2.33 6.80 -12.80 -0.09 2.24 16 5 C -0.03 -0.18 5.32 -27.88 -0.15 -0.32 16 6 C -0.09 -0.59 2.91 -90.62 -0.26 -0.85 16 7 C -0.15 -0.69 9.19 37.16 0.34 -0.35 16 8 C -0.15 -1.05 9.00 37.16 0.33 -0.72 16 9 O -0.18 -2.20 7.45 4.44 0.03 -2.17 16 10 C -0.11 -1.56 6.79 -36.84 -0.25 -1.81 16 11 C 0.61 9.31 7.65 -12.84 -0.10 9.21 16 12 O -0.52 -8.90 14.33 5.20 0.07 -8.83 16 13 N -0.59 -8.74 2.97 -174.29 -0.52 -9.25 16 14 C 0.11 1.68 6.43 -3.71 -0.02 1.66 16 15 C -0.15 -2.64 5.69 -26.45 -0.15 -2.79 16 16 C 0.18 3.39 2.73 -67.73 -0.19 3.21 16 17 N -0.72 -17.65 5.12 -53.23 -0.27 -17.92 16 18 C -0.24 -6.53 9.93 -15.06 -0.15 -6.68 16 19 H 0.07 1.83 7.83 -52.49 -0.41 1.42 16 20 C -0.01 -0.36 5.50 -17.43 -0.10 -0.45 16 21 N -0.93 -27.88 13.06 55.49 0.72 -27.15 16 22 Si 0.91 22.10 29.55 -169.99 -5.02 17.08 16 23 H -0.29 -6.86 7.11 56.52 0.40 -6.46 16 24 H -0.29 -7.18 7.11 56.52 0.40 -6.77 16 25 H -0.29 -6.84 7.11 56.52 0.40 -6.43 16 26 C -0.14 -2.19 5.55 -26.61 -0.15 -2.33 16 27 C 0.10 1.35 6.12 -3.71 -0.02 1.33 16 28 H 0.08 0.82 8.14 -51.93 -0.42 0.40 16 29 H 0.08 0.73 8.14 -51.93 -0.42 0.31 16 30 H 0.09 1.13 6.66 -51.93 -0.35 0.78 16 31 H 0.10 0.54 8.14 -51.93 -0.42 0.12 16 32 H 0.11 0.64 8.14 -51.93 -0.42 0.22 16 33 H 0.08 0.53 8.14 -51.93 -0.42 0.11 16 34 H 0.06 0.25 8.14 -51.93 -0.42 -0.17 16 35 H 0.06 0.28 8.14 -51.93 -0.42 -0.15 16 36 H 0.06 0.26 8.14 -51.92 -0.42 -0.16 16 37 H 0.05 0.35 8.14 -51.93 -0.42 -0.07 16 38 H 0.06 0.39 8.14 -51.93 -0.42 -0.03 16 39 H 0.06 0.55 6.81 -51.93 -0.35 0.20 16 40 H 0.07 0.92 8.14 -51.93 -0.42 0.50 16 41 H 0.09 1.33 7.00 -51.93 -0.36 0.97 16 42 H 0.08 1.45 8.14 -51.93 -0.42 1.03 16 43 H 0.06 1.15 8.14 -51.93 -0.42 0.73 16 44 H 0.05 0.93 8.08 -51.93 -0.42 0.51 16 45 H 0.38 10.05 7.80 -40.82 -0.32 9.73 16 46 H 0.26 7.44 8.31 -40.82 -0.34 7.10 16 47 H 0.06 1.07 8.14 -51.93 -0.42 0.65 16 48 H 0.08 1.23 8.14 -51.93 -0.42 0.81 16 49 H 0.10 1.20 4.26 -52.73 -0.22 0.97 16 50 H 0.07 0.88 8.14 -51.93 -0.42 0.45 16 LS Contribution 397.92 15.07 6.00 6.00 Total: -1.00 -31.70 397.92 -8.58 -40.28 By element: Atomic # 1 Polarization: 15.07 SS G_CDS: -8.34 Total: 6.74 kcal Atomic # 6 Polarization: 2.45 SS G_CDS: -1.18 Total: 1.26 kcal Atomic # 7 Polarization: -60.22 SS G_CDS: -0.14 Total: -60.36 kcal Atomic # 8 Polarization: -11.10 SS G_CDS: 0.11 Total: -10.99 kcal Atomic # 14 Polarization: 22.10 SS G_CDS: -5.02 Total: 17.08 kcal Total LS contribution 6.00 Total: 6.00 kcal Total: -31.70 -8.58 -40.28 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000997076813.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 27.569 kcal (2) G-P(sol) polarization free energy of solvation -31.699 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -4.130 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.580 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.279 kcal (6) G-S(sol) free energy of system = (1) + (5) -12.710 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.01 seconds