Wall clock time and date at job start Tue Mar 31 2020 20:01:10 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50707 * 1 3 3 N 1.33688 * 126.27989 * 2 1 4 4 C 1.30613 * 108.99785 * 180.26055 * 3 2 1 5 5 C 1.50699 * 125.42105 * 179.79029 * 4 3 2 6 6 C 1.53001 * 109.47395 * 89.97604 * 5 4 3 7 7 C 1.52996 * 109.47515 * 174.99954 * 6 5 4 8 8 C 1.53002 * 109.46839 * 294.99819 * 6 5 4 9 9 O 1.33665 * 109.15285 * 359.76413 * 4 3 2 10 10 C 1.35336 * 107.68609 * 0.02562 * 9 4 3 11 11 C 1.46721 * 126.64634 * 179.97438 * 10 9 4 12 12 O 1.21688 * 120.00060 * 172.48887 * 11 10 9 13 13 N 1.34771 * 119.99931 * 352.49278 * 11 10 9 14 14 C 1.46928 * 120.63642 * 172.84578 * 13 11 10 15 15 C 1.53189 * 108.89664 * 126.29638 * 14 13 11 16 16 C 1.53351 * 109.15002 * 54.58101 * 15 14 13 17 17 N 1.46496 * 109.41858 * 178.67587 * 16 15 14 18 18 C 1.36937 * 119.99709 * 275.12413 * 17 16 15 19 19 H 1.08000 * 120.00496 * 0.02562 * 18 17 16 20 20 C 1.38819 * 119.99842 * 179.97438 * 18 17 16 21 21 N 1.31620 * 119.99789 * 0.02562 * 20 18 17 22 22 Si 1.86800 * 119.99834 * 180.02562 * 20 18 17 23 23 H 1.48491 * 109.47082 * 60.00648 * 22 20 18 24 24 H 1.48498 * 109.46903 * 180.02562 * 22 20 18 25 25 H 1.48503 * 109.47349 * 300.00261 * 22 20 18 26 26 C 1.53046 * 109.60678 * 298.71517 * 16 15 14 27 27 C 1.46934 * 120.63057 * 352.82138 * 13 11 10 28 28 H 1.08999 * 109.46798 * 270.13905 * 1 2 3 29 29 H 1.09004 * 109.46366 * 30.13036 * 1 2 3 30 30 H 1.08994 * 109.47683 * 150.13204 * 1 2 3 31 31 H 1.09002 * 109.47083 * 209.97165 * 5 4 3 32 32 H 1.09003 * 109.47657 * 329.97159 * 5 4 3 33 33 H 1.09002 * 109.47234 * 54.99344 * 6 5 4 34 34 H 1.09002 * 109.47368 * 59.99471 * 7 6 5 35 35 H 1.09003 * 109.47510 * 180.02562 * 7 6 5 36 36 H 1.09008 * 109.46840 * 299.99634 * 7 6 5 37 37 H 1.09002 * 109.47235 * 179.97438 * 8 6 5 38 38 H 1.09002 * 109.46820 * 299.99778 * 8 6 5 39 39 H 1.09005 * 109.47205 * 59.99686 * 8 6 5 40 40 H 1.09004 * 109.58608 * 246.16002 * 14 13 11 41 41 H 1.09004 * 109.58234 * 6.43864 * 14 13 11 42 42 H 1.09005 * 109.49511 * 174.66229 * 15 14 13 43 43 H 1.09002 * 109.49756 * 294.75689 * 15 14 13 44 44 H 1.09002 * 109.41675 * 58.74593 * 16 15 14 45 45 H 0.96999 * 120.00086 * 95.12561 * 17 16 15 46 46 H 0.97003 * 119.99730 * 179.97438 * 21 20 18 47 47 H 1.09000 * 109.49211 * 301.42276 * 26 16 15 48 48 H 1.08996 * 109.52240 * 181.34115 * 26 16 15 49 49 H 1.08993 * 109.58702 * 353.42179 * 27 13 11 50 50 H 1.09004 * 109.58411 * 113.70226 * 27 13 11 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5071 0.0000 0.0000 3 7 2.2981 1.0777 0.0000 4 6 3.5453 0.6897 -0.0056 5 6 4.7441 1.6029 -0.0120 6 6 5.1563 1.9136 1.4282 7 6 6.4455 2.7375 1.4234 8 6 4.0452 2.7091 2.1163 9 8 3.5889 -0.6462 -0.0042 10 6 2.3137 -1.0993 0.0020 11 6 1.8825 -2.5017 0.0052 12 8 0.7057 -2.7762 0.1485 13 7 2.7899 -3.4860 -0.1507 14 6 2.4012 -4.8943 0.0055 15 6 2.8197 -5.6666 -1.2494 16 6 4.3172 -5.4488 -1.4981 17 7 4.7306 -6.2105 -2.6792 18 6 5.0737 -7.5305 -2.5570 19 1 5.0392 -8.0102 -1.5900 20 6 5.4650 -8.2525 -3.6763 21 7 5.5067 -7.6680 -4.8548 22 14 5.9324 -10.0533 -3.5096 23 1 4.7763 -10.8174 -2.9761 24 1 6.3102 -10.5919 -4.8409 25 1 7.0827 -10.1822 -2.5794 26 6 4.5880 -3.9605 -1.7306 27 6 4.1866 -3.1712 -0.4807 28 1 -0.3633 0.0025 1.0277 29 1 -0.3632 0.8889 -0.5159 30 1 -0.3634 -0.8911 -0.5117 31 1 5.5701 1.1144 -0.5290 32 1 4.4916 2.5304 -0.5259 33 1 5.3230 0.9812 1.9677 34 1 6.2788 3.6699 0.8839 35 1 6.7394 2.9585 2.4495 36 1 7.2371 2.1707 0.9331 37 1 4.3387 2.9302 3.1426 38 1 3.8785 3.6415 1.5769 39 1 3.1267 2.1222 2.1198 40 1 2.9001 -5.3164 0.8779 41 1 1.3209 -4.9630 0.1336 42 1 2.6221 -6.7289 -1.1056 43 1 2.2524 -5.3033 -2.1064 44 1 4.8819 -5.7893 -0.6302 45 1 4.7613 -5.7798 -3.5478 46 1 5.7804 -8.1724 -5.6369 47 1 4.0041 -3.6134 -2.5831 48 1 5.6488 -3.8103 -1.9308 49 1 4.2842 -2.1033 -0.6759 50 1 4.8309 -3.4506 0.3530 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000997076813.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 20:01:10 Heat of formation + Delta-G solvation = -33.050672 kcal Electronic energy + Delta-G solvation = -29650.014357 eV Core-core repulsion = 25677.960533 eV Total energy + Delta-G solvation = -3972.053824 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 335.200 amu Computer time = 1.16 seconds Orbital eigenvalues (eV) -44.62705 -41.15710 -38.89105 -37.54435 -36.65095 -35.98752 -33.89741 -33.03002 -32.04658 -31.15798 -29.63203 -28.38434 -27.97428 -26.53067 -24.70228 -24.33995 -23.14592 -22.87553 -21.81250 -21.02064 -20.69028 -19.25315 -18.49007 -18.14236 -17.51298 -17.08289 -16.70952 -16.28996 -16.17889 -15.54046 -15.42346 -15.38741 -15.11104 -14.93030 -14.85226 -14.48316 -14.34202 -14.13848 -13.90517 -13.71222 -13.35598 -13.27721 -13.14891 -13.04366 -12.81747 -12.72911 -12.66082 -12.33842 -12.24570 -12.20397 -12.06454 -12.00211 -11.87888 -11.75042 -11.70246 -11.60551 -11.36971 -11.20919 -10.89508 -10.10519 -9.68913 -9.02502 -7.94086 -5.22946 -0.33084 1.19593 1.27399 1.47832 1.50299 1.56177 1.80630 1.95646 2.56302 2.77792 3.34214 3.39089 3.58936 3.75392 3.77998 3.85525 3.95009 4.00891 4.07119 4.10448 4.24883 4.32449 4.38730 4.39592 4.52553 4.60348 4.62474 4.65167 4.69831 4.76515 4.78414 4.79408 4.85475 4.89181 4.90906 4.99789 5.04505 5.07273 5.09956 5.20570 5.25546 5.29406 5.43143 5.45111 5.47894 5.51108 5.52829 6.10201 6.27537 6.48432 6.79872 7.33761 8.08794 8.31932 9.29287 Molecular weight = 335.20amu Principal moments of inertia in cm(-1) A = 0.015624 B = 0.002594 C = 0.002335 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1791.678219 B =10789.873407 C =11986.891022 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.076 4.076 2 C 0.077 3.923 3 N -0.500 5.500 4 C 0.231 3.769 5 C -0.027 4.027 6 C -0.089 4.089 7 C -0.142 4.142 8 C -0.148 4.148 9 O -0.181 6.181 10 C -0.137 4.137 11 C 0.604 3.396 12 O -0.546 6.546 13 N -0.597 5.597 14 C 0.123 3.877 15 C -0.139 4.139 16 C 0.174 3.826 17 N -0.737 5.737 18 C -0.237 4.237 19 H 0.078 0.922 20 C -0.077 4.077 21 N -0.971 5.971 22 Si 0.971 3.029 23 H -0.279 1.279 24 H -0.299 1.299 25 H -0.276 1.276 26 C -0.127 4.127 27 C 0.110 3.890 28 H 0.090 0.910 29 H 0.091 0.909 30 H 0.079 0.921 31 H 0.119 0.881 32 H 0.123 0.877 33 H 0.069 0.931 34 H 0.067 0.933 35 H 0.063 0.937 36 H 0.067 0.933 37 H 0.061 0.939 38 H 0.065 0.935 39 H 0.035 0.965 40 H 0.091 0.909 41 H 0.086 0.914 42 H 0.065 0.935 43 H 0.039 0.961 44 H 0.054 0.946 45 H 0.371 0.629 46 H 0.250 0.750 47 H 0.050 0.950 48 H 0.084 0.916 49 H 0.107 0.893 50 H 0.093 0.907 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.168 23.163 14.932 27.584 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.132 4.132 2 C -0.047 4.047 3 N -0.229 5.229 4 C 0.026 3.974 5 C -0.065 4.065 6 C -0.108 4.108 7 C -0.199 4.199 8 C -0.206 4.206 9 O -0.070 6.070 10 C -0.192 4.192 11 C 0.393 3.607 12 O -0.427 6.427 13 N -0.328 5.328 14 C 0.000 4.000 15 C -0.180 4.180 16 C 0.066 3.934 17 N -0.376 5.376 18 C -0.369 4.369 19 H 0.096 0.904 20 C -0.269 4.269 21 N -0.622 5.622 22 Si 0.800 3.200 23 H -0.206 1.206 24 H -0.225 1.225 25 H -0.202 1.202 26 C -0.166 4.166 27 C -0.012 4.012 28 H 0.109 0.891 29 H 0.109 0.891 30 H 0.098 0.902 31 H 0.137 0.863 32 H 0.141 0.859 33 H 0.087 0.913 34 H 0.086 0.914 35 H 0.082 0.918 36 H 0.086 0.914 37 H 0.080 0.920 38 H 0.084 0.916 39 H 0.054 0.946 40 H 0.109 0.891 41 H 0.105 0.895 42 H 0.084 0.916 43 H 0.058 0.942 44 H 0.072 0.928 45 H 0.202 0.798 46 H 0.059 0.941 47 H 0.068 0.932 48 H 0.102 0.898 49 H 0.125 0.875 50 H 0.111 0.889 Dipole moment (debyes) X Y Z Total from point charges -1.849 23.406 15.087 27.908 hybrid contribution 0.254 -1.902 -0.813 2.084 sum -1.595 21.504 14.274 25.859 Atomic orbital electron populations 1.20362 0.84495 1.04184 1.04200 1.22397 0.99132 0.86602 0.96593 1.70408 1.00926 1.30670 1.20936 1.27471 0.96318 0.79766 0.93885 1.20728 0.89341 0.96201 1.00230 1.21107 0.96760 0.99952 0.93015 1.21795 0.95177 1.00076 1.02901 1.21877 0.97459 1.00353 1.00867 1.84605 1.28758 1.23765 1.69846 1.22650 0.82005 0.95669 1.18846 1.16616 0.85115 0.81974 0.77026 1.90812 1.16836 1.82184 1.52840 1.48102 1.10421 1.06558 1.67733 1.21688 1.01731 0.78365 0.98176 1.22518 0.99016 0.99824 0.96616 1.20474 0.92381 0.90544 0.90044 1.42633 1.79982 1.08790 1.06173 1.19592 1.35395 0.87876 0.94031 0.90366 1.25551 1.03654 1.02360 0.95342 1.69815 1.56145 1.37319 0.98934 0.85247 0.78271 0.80350 0.76125 1.20561 1.22500 1.20186 1.22065 1.02182 0.94896 0.97484 1.22178 0.80324 1.01177 0.97531 0.89119 0.89075 0.90191 0.86274 0.85873 0.91300 0.91380 0.91798 0.91441 0.91978 0.91595 0.94564 0.89129 0.89516 0.91621 0.94176 0.92779 0.79768 0.94134 0.93151 0.89751 0.87525 0.88909 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.08 -1.64 9.80 71.24 0.70 -0.94 16 2 C 0.08 1.96 7.16 41.84 0.30 2.26 16 3 N -0.50 -11.66 10.52 -291.06 -3.06 -14.72 16 4 C 0.23 4.54 6.80 88.29 0.60 5.14 16 5 C -0.03 -0.30 5.32 29.85 0.16 -0.14 16 6 C -0.09 -0.90 2.91 -10.79 -0.03 -0.94 16 7 C -0.14 -0.92 9.19 71.98 0.66 -0.26 16 8 C -0.15 -1.83 9.00 71.98 0.65 -1.18 16 9 O -0.18 -4.15 7.45 -7.01 -0.05 -4.20 16 10 C -0.14 -3.71 6.79 24.05 0.16 -3.55 16 11 C 0.60 18.25 7.65 86.46 0.66 18.91 16 12 O -0.55 -18.63 14.33 -4.31 -0.06 -18.69 16 13 N -0.60 -16.88 2.97 -823.55 -2.45 -19.32 16 14 C 0.12 3.51 6.43 86.36 0.56 4.07 16 15 C -0.14 -4.87 5.69 30.78 0.18 -4.70 16 16 C 0.17 6.50 2.73 45.13 0.12 6.63 16 17 N -0.74 -36.22 5.12 -322.31 -1.65 -37.87 16 18 C -0.24 -12.82 9.93 84.04 0.83 -11.99 16 19 H 0.08 4.02 7.83 -2.91 -0.02 4.00 16 20 C -0.08 -4.37 5.50 84.86 0.47 -3.90 16 21 N -0.97 -59.19 13.06 21.65 0.28 -58.91 16 22 Si 0.97 45.61 29.55 68.60 2.03 47.64 16 23 H -0.28 -12.69 7.11 99.48 0.71 -11.99 16 24 H -0.30 -14.27 7.11 99.48 0.71 -13.56 16 25 H -0.28 -12.38 7.11 99.48 0.71 -11.67 16 26 C -0.13 -3.92 5.55 30.67 0.17 -3.75 16 27 C 0.11 2.73 6.12 86.36 0.53 3.26 16 28 H 0.09 1.78 8.14 -2.39 -0.02 1.76 16 29 H 0.09 1.66 8.14 -2.39 -0.02 1.64 16 30 H 0.08 1.96 6.66 -2.39 -0.02 1.95 16 31 H 0.12 0.88 8.14 -2.39 -0.02 0.86 16 32 H 0.12 1.07 8.14 -2.39 -0.02 1.05 16 33 H 0.07 0.82 8.14 -2.39 -0.02 0.80 16 34 H 0.07 0.35 8.14 -2.39 -0.02 0.33 16 35 H 0.06 0.41 8.14 -2.39 -0.02 0.39 16 36 H 0.07 0.37 8.14 -2.38 -0.02 0.35 16 37 H 0.06 0.67 8.14 -2.39 -0.02 0.65 16 38 H 0.06 0.73 8.14 -2.39 -0.02 0.71 16 39 H 0.04 0.62 6.81 -2.38 -0.02 0.61 16 40 H 0.09 2.23 8.14 -2.39 -0.02 2.21 16 41 H 0.09 2.56 7.00 -2.38 -0.02 2.55 16 42 H 0.07 2.45 8.14 -2.38 -0.02 2.43 16 43 H 0.04 1.55 8.14 -2.39 -0.02 1.53 16 44 H 0.05 1.98 8.08 -2.39 -0.02 1.96 16 45 H 0.37 19.88 7.80 -92.71 -0.72 19.16 16 46 H 0.25 14.86 8.31 -92.71 -0.77 14.09 16 47 H 0.05 1.68 8.14 -2.39 -0.02 1.67 16 48 H 0.08 2.52 8.14 -2.39 -0.02 2.50 16 49 H 0.11 2.47 4.26 -15.04 -0.06 2.41 16 50 H 0.09 1.98 8.14 -2.39 -0.02 1.96 16 Total: -1.00 -68.73 397.92 1.91 -66.82 By element: Atomic # 1 Polarization: 30.18 SS G_CDS: 0.16 Total: 30.34 kcal Atomic # 6 Polarization: 2.21 SS G_CDS: 6.71 Total: 8.92 kcal Atomic # 7 Polarization: -123.94 SS G_CDS: -6.88 Total: -130.82 kcal Atomic # 8 Polarization: -22.78 SS G_CDS: -0.11 Total: -22.89 kcal Atomic # 14 Polarization: 45.61 SS G_CDS: 2.03 Total: 47.64 kcal Total: -68.73 1.91 -66.82 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000997076813.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 33.768 kcal (2) G-P(sol) polarization free energy of solvation -68.727 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -34.959 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.908 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -66.819 kcal (6) G-S(sol) free energy of system = (1) + (5) -33.051 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.16 seconds