Wall clock time and date at job start Tue Mar 31 2020 20:03:05 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50696 * 1 3 3 N 1.33695 * 126.27401 * 2 1 4 4 C 1.30610 * 108.99612 * 180.02562 * 3 2 1 5 5 C 1.50699 * 125.42179 * 179.97438 * 4 3 2 6 6 C 1.53001 * 109.47330 * 89.97369 * 5 4 3 7 7 C 1.52998 * 109.47339 * 175.00121 * 6 5 4 8 8 C 1.53001 * 109.47083 * 294.99915 * 6 5 4 9 9 O 1.33661 * 109.15722 * 359.75087 * 4 3 2 10 10 C 1.35348 * 107.68155 * 0.39542 * 9 4 3 11 11 C 1.46715 * 126.64169 * 179.87737 * 10 9 4 12 12 O 1.21692 * 119.99918 * 179.68871 * 11 10 9 13 13 N 1.34772 * 120.00536 * 359.68861 * 11 10 9 14 14 C 1.46499 * 120.00843 * 179.97438 * 13 11 10 15 15 H 1.09002 * 109.51703 * 34.91859 * 14 13 11 16 16 C 1.53042 * 109.49918 * 154.99667 * 14 13 11 17 17 C 1.53043 * 109.52588 * 181.32561 * 16 14 13 18 18 C 1.53195 * 109.31393 * 298.61969 * 17 16 14 19 19 N 1.46926 * 108.76708 * 54.65459 * 18 17 16 20 20 C 1.36931 * 120.63289 * 126.40565 * 19 18 17 21 21 H 1.08001 * 119.99988 * 207.66278 * 20 19 18 22 22 C 1.38809 * 119.99891 * 27.66355 * 20 19 18 23 23 N 1.31618 * 120.00290 * 17.36942 * 22 20 19 24 24 Si 1.86802 * 120.00128 * 197.36428 * 22 20 19 25 25 H 1.48501 * 109.46973 * 89.99972 * 24 22 20 26 26 H 1.48494 * 109.47222 * 210.00108 * 24 22 20 27 27 H 1.48497 * 109.47200 * 330.00246 * 24 22 20 28 28 C 1.46935 * 118.73705 * 306.38707 * 19 18 17 29 29 H 1.09004 * 109.47311 * 269.98195 * 1 2 3 30 30 H 1.09007 * 109.47114 * 29.98210 * 1 2 3 31 31 H 1.09007 * 109.47108 * 149.97912 * 1 2 3 32 32 H 1.08999 * 109.47307 * 209.97665 * 5 4 3 33 33 H 1.09004 * 109.47303 * 329.97351 * 5 4 3 34 34 H 1.09000 * 109.47115 * 55.00072 * 6 5 4 35 35 H 1.09000 * 109.47057 * 59.99915 * 7 6 5 36 36 H 1.09001 * 109.47379 * 180.02562 * 7 6 5 37 37 H 1.09001 * 109.46995 * 299.99909 * 7 6 5 38 38 H 1.08994 * 109.47262 * 179.97438 * 8 6 5 39 39 H 1.09000 * 109.47273 * 300.00060 * 8 6 5 40 40 H 1.09002 * 109.47110 * 59.99866 * 8 6 5 41 41 H 0.97001 * 119.99747 * 359.97438 * 13 11 10 42 42 H 1.08999 * 109.46165 * 301.34197 * 16 14 13 43 43 H 1.08995 * 109.45956 * 61.31875 * 16 14 13 44 44 H 1.09007 * 109.49747 * 58.58252 * 17 16 14 45 45 H 1.08997 * 109.50037 * 178.68105 * 17 16 14 46 46 H 1.08998 * 109.59709 * 294.86466 * 18 17 16 47 47 H 1.09001 * 109.58746 * 174.43515 * 18 17 16 48 48 H 0.96998 * 120.00359 * 179.97438 * 23 22 20 49 49 H 1.09000 * 109.58434 * 293.82071 * 28 19 18 50 50 H 1.08996 * 109.58552 * 173.39307 * 28 19 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 7 2.2980 1.0778 0.0000 4 6 3.5451 0.6899 -0.0006 5 6 4.7439 1.6032 -0.0013 6 6 5.1499 1.9130 1.4409 7 6 6.4390 2.7370 1.4421 8 6 4.0359 2.7081 2.1248 9 8 3.5890 -0.6460 0.0046 10 6 2.3136 -1.0991 -0.0005 11 6 1.8827 -2.5016 -0.0001 12 8 0.6966 -2.7737 0.0007 13 7 2.8004 -3.4886 -0.0007 14 6 2.3702 -4.8890 0.0002 15 1 1.4574 -4.9899 -0.5869 16 6 3.4694 -5.7615 -0.6103 17 6 3.0073 -7.2202 -0.6399 18 6 2.7496 -7.6992 0.7922 19 7 1.8015 -6.7791 1.4350 20 6 0.6570 -7.2524 2.0191 21 1 -0.2167 -6.6210 2.0847 22 6 0.6198 -8.5437 2.5269 23 7 1.7414 -9.1905 2.7635 24 14 -1.0222 -9.3637 2.8747 25 1 -1.4777 -10.0928 1.6639 26 1 -0.8693 -10.3202 4.0002 27 1 -2.0250 -8.3299 3.2365 28 6 2.1049 -5.3415 1.4395 29 1 -0.3634 -0.0003 1.0277 30 1 -0.3634 0.8902 -0.5136 31 1 -0.3634 -0.8898 -0.5142 32 1 5.5721 1.1152 -0.5151 33 1 4.4935 2.5311 -0.5156 34 1 5.3145 0.9803 1.9805 35 1 6.2745 3.6698 0.9026 36 1 6.7286 2.9574 2.4696 37 1 7.2327 2.1706 0.9549 38 1 4.3249 2.9284 3.1524 39 1 3.8713 3.6408 1.5853 40 1 3.1175 2.1210 2.1240 41 1 3.7459 -3.2718 -0.0017 42 1 3.6773 -5.4257 -1.6262 43 1 4.3743 -5.6795 -0.0084 44 1 2.0884 -7.2990 -1.2210 45 1 3.7809 -7.8377 -1.0962 46 1 3.6864 -7.7067 1.3493 47 1 2.3267 -8.7036 0.7710 48 1 1.7155 -10.0927 3.1187 49 1 2.9892 -5.1566 2.0495 50 1 1.2567 -4.7903 1.8454 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001008803647.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 20:03:05 Heat of formation + Delta-G solvation = -15.167030 kcal Electronic energy + Delta-G solvation = -29409.912545 eV Core-core repulsion = 25438.634213 eV Total energy + Delta-G solvation = -3971.278331 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 335.200 amu Computer time = 1.23 seconds Orbital eigenvalues (eV) -43.60486 -39.62217 -37.42707 -36.96815 -35.51241 -34.32239 -32.50077 -31.92966 -30.48849 -29.14184 -28.81742 -27.51125 -26.97799 -25.30290 -23.09313 -22.18421 -22.11747 -21.46534 -20.61654 -20.27537 -19.49872 -17.96944 -17.12330 -16.79958 -16.15562 -15.88349 -15.51580 -14.85653 -14.76923 -14.48884 -14.33268 -14.12666 -13.88537 -13.45581 -13.33019 -13.26163 -13.14446 -13.04609 -12.68545 -12.44373 -12.43128 -12.40316 -12.15698 -11.86439 -11.61715 -11.41630 -11.19086 -11.13085 -11.00882 -10.95222 -10.89952 -10.82065 -10.28564 -10.23718 -10.16153 -9.92712 -9.69389 -9.65631 -9.06432 -8.79355 -8.41635 -6.69462 -5.78951 -3.21353 0.71964 2.22233 2.25937 3.13594 3.21482 3.40360 3.46913 3.49377 3.65390 4.34288 4.39895 4.50250 4.53297 4.63427 4.78034 5.02426 5.08039 5.19987 5.24967 5.28155 5.34758 5.37950 5.41127 5.49856 5.51174 5.53902 5.58779 5.61279 5.67556 5.70027 5.77716 5.83508 5.88074 5.99591 6.02850 6.08543 6.20398 6.22736 6.47556 6.56411 6.59714 6.64931 6.79597 6.92506 7.33047 7.37489 7.62031 7.63269 7.82829 8.17408 8.44969 9.21281 9.83302 10.38811 11.29818 Molecular weight = 335.20amu Principal moments of inertia in cm(-1) A = 0.016567 B = 0.002488 C = 0.002396 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1689.701068 B =11249.343829 C =11685.552982 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.081 4.081 2 C 0.077 3.923 3 N -0.483 5.483 4 C 0.218 3.782 5 C -0.023 4.023 6 C -0.095 4.095 7 C -0.146 4.146 8 C -0.150 4.150 9 O -0.188 6.188 10 C -0.112 4.112 11 C 0.604 3.396 12 O -0.508 6.508 13 N -0.709 5.709 14 C 0.125 3.875 15 H 0.090 0.910 16 C -0.115 4.115 17 C -0.139 4.139 18 C 0.166 3.834 19 N -0.587 5.587 20 C -0.251 4.251 21 H 0.068 0.932 22 C 0.002 3.998 23 N -0.904 5.904 24 Si 0.904 3.096 25 H -0.287 1.287 26 H -0.291 1.291 27 H -0.278 1.278 28 C 0.142 3.858 29 H 0.082 0.918 30 H 0.075 0.925 31 H 0.096 0.904 32 H 0.096 0.904 33 H 0.109 0.891 34 H 0.076 0.924 35 H 0.059 0.941 36 H 0.061 0.939 37 H 0.058 0.942 38 H 0.056 0.944 39 H 0.059 0.941 40 H 0.060 0.940 41 H 0.399 0.601 42 H 0.051 0.949 43 H 0.060 0.940 44 H 0.058 0.942 45 H 0.055 0.945 46 H 0.019 0.981 47 H 0.090 0.910 48 H 0.254 0.746 49 H 0.018 0.982 50 H 0.059 0.941 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 9.538 21.985 -7.105 24.996 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.138 4.138 2 C -0.047 4.047 3 N -0.213 5.213 4 C 0.013 3.987 5 C -0.061 4.061 6 C -0.114 4.114 7 C -0.203 4.203 8 C -0.207 4.207 9 O -0.075 6.075 10 C -0.167 4.167 11 C 0.389 3.611 12 O -0.385 6.385 13 N -0.358 5.358 14 C 0.020 3.980 15 H 0.108 0.892 16 C -0.153 4.153 17 C -0.179 4.179 18 C 0.041 3.959 19 N -0.310 5.310 20 C -0.380 4.380 21 H 0.085 0.915 22 C -0.196 4.196 23 N -0.548 5.548 24 Si 0.734 3.266 25 H -0.214 1.214 26 H -0.218 1.218 27 H -0.203 1.203 28 C 0.014 3.986 29 H 0.100 0.900 30 H 0.093 0.907 31 H 0.115 0.885 32 H 0.115 0.885 33 H 0.127 0.873 34 H 0.095 0.905 35 H 0.078 0.922 36 H 0.080 0.920 37 H 0.077 0.923 38 H 0.075 0.925 39 H 0.078 0.922 40 H 0.079 0.921 41 H 0.233 0.767 42 H 0.070 0.930 43 H 0.079 0.921 44 H 0.077 0.923 45 H 0.074 0.926 46 H 0.037 0.963 47 H 0.108 0.892 48 H 0.064 0.936 49 H 0.036 0.964 50 H 0.077 0.923 Dipole moment (debyes) X Y Z Total from point charges 8.556 22.163 -7.010 24.770 hybrid contribution 0.042 -1.042 0.232 1.068 sum 8.598 21.121 -6.779 23.791 Atomic orbital electron populations 1.20393 0.85270 1.04285 1.03822 1.22063 0.98347 0.86395 0.97910 1.70341 1.00287 1.31033 1.19665 1.26426 0.95614 0.79357 0.97333 1.20366 0.90175 0.96175 0.99386 1.21148 0.96287 1.00178 0.93790 1.21819 0.96082 0.99904 1.02493 1.21890 0.98272 1.00375 1.00210 1.84434 1.29928 1.23659 1.69497 1.23110 0.81078 0.96562 1.15995 1.16320 0.86067 0.81142 0.77594 1.90894 1.15596 1.81565 1.50478 1.46075 1.09274 1.06905 1.73543 1.21881 0.98405 0.76870 1.00843 0.89164 1.21685 0.97605 0.96693 0.99331 1.22184 1.00171 0.93765 1.01767 1.20864 0.92410 0.95744 0.86914 1.44008 1.23428 0.99613 1.63926 1.19238 0.89142 0.97938 1.31709 0.91455 1.25028 0.96831 0.99166 0.98606 1.70038 1.24810 1.12781 1.47221 0.86258 0.83618 0.79293 0.77463 1.21379 1.21787 1.20339 1.21182 0.98559 0.87211 0.91625 0.89962 0.90662 0.88507 0.88513 0.87307 0.90516 0.92217 0.91990 0.92273 0.92516 0.92183 0.92099 0.76724 0.92990 0.92145 0.92323 0.92601 0.96258 0.89153 0.93637 0.96413 0.92258 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.08 -0.99 9.87 36.00 0.36 -0.63 16 2 C 0.08 1.07 7.16 -82.47 -0.59 0.48 16 3 N -0.48 -6.17 10.52 -7.07 -0.07 -6.24 16 4 C 0.22 2.40 6.80 -12.80 -0.09 2.31 16 5 C -0.02 -0.16 5.32 -27.88 -0.15 -0.30 16 6 C -0.09 -0.62 2.91 -90.62 -0.26 -0.88 16 7 C -0.15 -0.68 9.19 37.16 0.34 -0.34 16 8 C -0.15 -1.13 9.00 37.16 0.33 -0.80 16 9 O -0.19 -2.36 10.57 4.42 0.05 -2.32 16 10 C -0.11 -1.62 7.18 -36.84 -0.26 -1.89 16 11 C 0.60 9.86 7.76 -12.84 -0.10 9.76 16 12 O -0.51 -9.71 14.46 5.20 0.08 -9.64 16 13 N -0.71 -10.74 5.08 -54.99 -0.28 -11.02 16 14 C 0.12 2.24 2.60 -67.81 -0.18 2.06 16 15 H 0.09 1.81 7.58 -51.93 -0.39 1.42 16 16 C -0.11 -1.84 5.36 -26.69 -0.14 -1.99 16 17 C -0.14 -2.56 6.08 -26.61 -0.16 -2.73 16 18 C 0.17 3.91 5.31 -3.71 -0.02 3.89 16 19 N -0.59 -14.88 2.99 -172.32 -0.52 -15.40 16 20 C -0.25 -7.03 9.59 -15.06 -0.14 -7.17 16 21 H 0.07 1.90 7.89 -52.49 -0.41 1.49 16 22 C 0.00 0.06 4.91 -17.43 -0.09 -0.03 16 23 N -0.90 -26.26 11.19 55.49 0.62 -25.64 16 24 Si 0.90 22.05 29.59 -169.99 -5.03 17.02 16 25 H -0.29 -6.95 7.11 56.52 0.40 -6.55 16 26 H -0.29 -7.14 7.11 56.52 0.40 -6.74 16 27 H -0.28 -6.71 7.11 56.52 0.40 -6.31 16 28 C 0.14 3.10 6.09 -3.71 -0.02 3.07 16 29 H 0.08 0.96 8.14 -51.93 -0.42 0.54 16 30 H 0.07 0.78 8.14 -51.92 -0.42 0.36 16 31 H 0.10 1.29 6.47 -51.93 -0.34 0.96 16 32 H 0.10 0.48 8.14 -51.93 -0.42 0.06 16 33 H 0.11 0.62 8.14 -51.93 -0.42 0.19 16 34 H 0.08 0.57 8.14 -51.93 -0.42 0.15 16 35 H 0.06 0.24 8.14 -51.93 -0.42 -0.18 16 36 H 0.06 0.29 8.14 -51.93 -0.42 -0.14 16 37 H 0.06 0.24 8.14 -51.93 -0.42 -0.18 16 38 H 0.06 0.39 8.14 -51.93 -0.42 -0.03 16 39 H 0.06 0.41 8.14 -51.93 -0.42 -0.01 16 40 H 0.06 0.60 6.81 -51.93 -0.35 0.25 16 41 H 0.40 5.04 8.40 -40.82 -0.34 4.70 16 42 H 0.05 0.72 8.14 -51.93 -0.42 0.30 16 43 H 0.06 0.93 8.14 -51.93 -0.42 0.50 16 44 H 0.06 1.12 8.14 -51.92 -0.42 0.69 16 45 H 0.06 0.90 8.14 -51.93 -0.42 0.48 16 46 H 0.02 0.47 8.14 -51.93 -0.42 0.05 16 47 H 0.09 2.38 6.04 -51.93 -0.31 2.07 16 48 H 0.25 7.11 8.31 -40.82 -0.34 6.77 16 49 H 0.02 0.39 8.14 -51.93 -0.42 -0.03 16 50 H 0.06 1.38 7.93 -51.93 -0.41 0.97 16 LS Contribution 400.53 15.07 6.04 6.04 Total: -1.00 -31.86 400.53 -8.76 -40.62 By element: Atomic # 1 Polarization: 10.23 SS G_CDS: -8.46 Total: 1.77 kcal Atomic # 6 Polarization: 5.98 SS G_CDS: -1.18 Total: 4.81 kcal Atomic # 7 Polarization: -58.05 SS G_CDS: -0.25 Total: -58.30 kcal Atomic # 8 Polarization: -12.08 SS G_CDS: 0.12 Total: -11.96 kcal Atomic # 14 Polarization: 22.05 SS G_CDS: -5.03 Total: 17.02 kcal Total LS contribution 6.04 Total: 6.04 kcal Total: -31.86 -8.76 -40.62 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001008803647.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 25.453 kcal (2) G-P(sol) polarization free energy of solvation -31.859 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -6.406 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.761 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.620 kcal (6) G-S(sol) free energy of system = (1) + (5) -15.167 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.23 seconds