Wall clock time and date at job start Tue Mar 31 2020 20:03:04 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50696 * 1 3 3 N 1.33695 * 126.27401 * 2 1 4 4 C 1.30610 * 108.99612 * 180.02562 * 3 2 1 5 5 C 1.50699 * 125.42179 * 179.97438 * 4 3 2 6 6 C 1.53001 * 109.47330 * 89.97369 * 5 4 3 7 7 C 1.52998 * 109.47339 * 175.00121 * 6 5 4 8 8 C 1.53001 * 109.47083 * 294.99915 * 6 5 4 9 9 O 1.33661 * 109.15722 * 359.75087 * 4 3 2 10 10 C 1.35348 * 107.68155 * 0.39542 * 9 4 3 11 11 C 1.46715 * 126.64169 * 179.87737 * 10 9 4 12 12 O 1.21692 * 119.99918 * 179.68871 * 11 10 9 13 13 N 1.34772 * 120.00536 * 359.68861 * 11 10 9 14 14 C 1.46499 * 120.00843 * 179.97438 * 13 11 10 15 15 H 1.09002 * 109.51703 * 34.91859 * 14 13 11 16 16 C 1.53042 * 109.49918 * 154.99667 * 14 13 11 17 17 C 1.53043 * 109.52588 * 181.32561 * 16 14 13 18 18 C 1.53195 * 109.31393 * 298.61969 * 17 16 14 19 19 N 1.46926 * 108.76708 * 54.65459 * 18 17 16 20 20 C 1.36931 * 120.63289 * 126.40565 * 19 18 17 21 21 H 1.08001 * 119.99988 * 207.66278 * 20 19 18 22 22 C 1.38809 * 119.99891 * 27.66355 * 20 19 18 23 23 N 1.31618 * 120.00290 * 17.36942 * 22 20 19 24 24 Si 1.86802 * 120.00128 * 197.36428 * 22 20 19 25 25 H 1.48501 * 109.46973 * 89.99972 * 24 22 20 26 26 H 1.48494 * 109.47222 * 210.00108 * 24 22 20 27 27 H 1.48497 * 109.47200 * 330.00246 * 24 22 20 28 28 C 1.46935 * 118.73705 * 306.38707 * 19 18 17 29 29 H 1.09004 * 109.47311 * 269.98195 * 1 2 3 30 30 H 1.09007 * 109.47114 * 29.98210 * 1 2 3 31 31 H 1.09007 * 109.47108 * 149.97912 * 1 2 3 32 32 H 1.08999 * 109.47307 * 209.97665 * 5 4 3 33 33 H 1.09004 * 109.47303 * 329.97351 * 5 4 3 34 34 H 1.09000 * 109.47115 * 55.00072 * 6 5 4 35 35 H 1.09000 * 109.47057 * 59.99915 * 7 6 5 36 36 H 1.09001 * 109.47379 * 180.02562 * 7 6 5 37 37 H 1.09001 * 109.46995 * 299.99909 * 7 6 5 38 38 H 1.08994 * 109.47262 * 179.97438 * 8 6 5 39 39 H 1.09000 * 109.47273 * 300.00060 * 8 6 5 40 40 H 1.09002 * 109.47110 * 59.99866 * 8 6 5 41 41 H 0.97001 * 119.99747 * 359.97438 * 13 11 10 42 42 H 1.08999 * 109.46165 * 301.34197 * 16 14 13 43 43 H 1.08995 * 109.45956 * 61.31875 * 16 14 13 44 44 H 1.09007 * 109.49747 * 58.58252 * 17 16 14 45 45 H 1.08997 * 109.50037 * 178.68105 * 17 16 14 46 46 H 1.08998 * 109.59709 * 294.86466 * 18 17 16 47 47 H 1.09001 * 109.58746 * 174.43515 * 18 17 16 48 48 H 0.96998 * 120.00359 * 179.97438 * 23 22 20 49 49 H 1.09000 * 109.58434 * 293.82071 * 28 19 18 50 50 H 1.08996 * 109.58552 * 173.39307 * 28 19 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 7 2.2980 1.0778 0.0000 4 6 3.5451 0.6899 -0.0006 5 6 4.7439 1.6032 -0.0013 6 6 5.1499 1.9130 1.4409 7 6 6.4390 2.7370 1.4421 8 6 4.0359 2.7081 2.1248 9 8 3.5890 -0.6460 0.0046 10 6 2.3136 -1.0991 -0.0005 11 6 1.8827 -2.5016 -0.0001 12 8 0.6966 -2.7737 0.0007 13 7 2.8004 -3.4886 -0.0007 14 6 2.3702 -4.8890 0.0002 15 1 1.4574 -4.9899 -0.5869 16 6 3.4694 -5.7615 -0.6103 17 6 3.0073 -7.2202 -0.6399 18 6 2.7496 -7.6992 0.7922 19 7 1.8015 -6.7791 1.4350 20 6 0.6570 -7.2524 2.0191 21 1 -0.2167 -6.6210 2.0847 22 6 0.6198 -8.5437 2.5269 23 7 1.7414 -9.1905 2.7635 24 14 -1.0222 -9.3637 2.8747 25 1 -1.4777 -10.0928 1.6639 26 1 -0.8693 -10.3202 4.0002 27 1 -2.0250 -8.3299 3.2365 28 6 2.1049 -5.3415 1.4395 29 1 -0.3634 -0.0003 1.0277 30 1 -0.3634 0.8902 -0.5136 31 1 -0.3634 -0.8898 -0.5142 32 1 5.5721 1.1152 -0.5151 33 1 4.4935 2.5311 -0.5156 34 1 5.3145 0.9803 1.9805 35 1 6.2745 3.6698 0.9026 36 1 6.7286 2.9574 2.4696 37 1 7.2327 2.1706 0.9549 38 1 4.3249 2.9284 3.1524 39 1 3.8713 3.6408 1.5853 40 1 3.1175 2.1210 2.1240 41 1 3.7459 -3.2718 -0.0017 42 1 3.6773 -5.4257 -1.6262 43 1 4.3743 -5.6795 -0.0084 44 1 2.0884 -7.2990 -1.2210 45 1 3.7809 -7.8377 -1.0962 46 1 3.6864 -7.7067 1.3493 47 1 2.3267 -8.7036 0.7710 48 1 1.7155 -10.0927 3.1187 49 1 2.9892 -5.1566 2.0495 50 1 1.2567 -4.7903 1.8454 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001008803647.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 20:03:04 Heat of formation + Delta-G solvation = -36.528494 kcal Electronic energy + Delta-G solvation = -29410.838847 eV Core-core repulsion = 25438.634213 eV Total energy + Delta-G solvation = -3972.204634 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 335.200 amu Computer time = 1.24 seconds Orbital eigenvalues (eV) -44.58897 -40.99015 -39.02968 -37.54890 -36.59136 -35.88613 -34.20873 -32.89934 -32.37092 -30.65704 -29.61238 -28.08443 -27.97397 -27.27799 -24.37427 -23.90663 -23.17756 -22.66224 -21.73732 -21.14384 -20.96675 -19.20976 -18.74294 -18.10329 -17.33706 -17.01241 -16.76858 -16.27553 -16.13686 -15.80665 -15.43910 -15.24649 -15.15341 -14.94177 -14.74519 -14.33107 -14.27108 -14.15380 -14.04296 -13.71883 -13.45516 -13.32206 -13.06426 -13.04622 -12.77095 -12.74559 -12.61088 -12.29330 -12.15006 -12.08920 -11.99215 -11.96696 -11.78858 -11.76392 -11.64716 -11.61676 -11.36337 -11.19648 -10.65473 -10.34558 -9.87745 -8.72835 -7.92150 -5.37824 -0.33770 1.21673 1.26876 1.44408 1.45575 1.54943 1.90468 2.01236 2.49253 2.78031 3.22125 3.53208 3.58218 3.71746 3.82330 3.84411 3.93691 4.05590 4.07635 4.20489 4.30546 4.37200 4.44033 4.51029 4.58841 4.62716 4.64184 4.72391 4.76801 4.82225 4.85251 4.87687 4.91181 4.97387 5.01580 5.05303 5.09208 5.10495 5.22511 5.24761 5.27537 5.35977 5.41644 5.46597 5.51704 5.61613 5.74460 6.24209 6.35015 6.51650 6.93841 7.11167 7.79709 8.29896 9.13745 Molecular weight = 335.20amu Principal moments of inertia in cm(-1) A = 0.016567 B = 0.002488 C = 0.002396 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1689.701068 B =11249.343829 C =11685.552982 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.079 4.079 2 C 0.076 3.924 3 N -0.500 5.500 4 C 0.236 3.764 5 C -0.024 4.024 6 C -0.091 4.091 7 C -0.141 4.141 8 C -0.150 4.150 9 O -0.188 6.188 10 C -0.136 4.136 11 C 0.605 3.395 12 O -0.544 6.544 13 N -0.696 5.696 14 C 0.142 3.858 15 H 0.068 0.932 16 C -0.105 4.105 17 C -0.128 4.128 18 C 0.170 3.830 19 N -0.606 5.606 20 C -0.267 4.267 21 H 0.055 0.945 22 C -0.044 4.044 23 N -0.930 5.930 24 Si 0.966 3.034 25 H -0.281 1.281 26 H -0.290 1.290 27 H -0.275 1.275 28 C 0.145 3.855 29 H 0.084 0.916 30 H 0.094 0.906 31 H 0.082 0.918 32 H 0.123 0.877 33 H 0.126 0.874 34 H 0.065 0.935 35 H 0.069 0.931 36 H 0.061 0.939 37 H 0.069 0.931 38 H 0.059 0.941 39 H 0.068 0.932 40 H 0.033 0.967 41 H 0.415 0.585 42 H 0.088 0.912 43 H 0.075 0.925 44 H 0.050 0.950 45 H 0.086 0.914 46 H 0.005 0.995 47 H 0.056 0.944 48 H 0.253 0.747 49 H 0.019 0.981 50 H 0.033 0.967 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 11.384 23.813 -8.472 27.720 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.136 4.136 2 C -0.048 4.048 3 N -0.230 5.230 4 C 0.030 3.970 5 C -0.061 4.061 6 C -0.111 4.111 7 C -0.198 4.198 8 C -0.207 4.207 9 O -0.075 6.075 10 C -0.191 4.191 11 C 0.392 3.608 12 O -0.424 6.424 13 N -0.347 5.347 14 C 0.036 3.964 15 H 0.087 0.913 16 C -0.143 4.143 17 C -0.168 4.168 18 C 0.045 3.955 19 N -0.330 5.330 20 C -0.397 4.397 21 H 0.073 0.927 22 C -0.240 4.240 23 N -0.575 5.575 24 Si 0.794 3.206 25 H -0.208 1.208 26 H -0.216 1.216 27 H -0.200 1.200 28 C 0.018 3.982 29 H 0.103 0.897 30 H 0.112 0.888 31 H 0.101 0.899 32 H 0.141 0.859 33 H 0.145 0.855 34 H 0.084 0.916 35 H 0.088 0.912 36 H 0.080 0.920 37 H 0.088 0.912 38 H 0.078 0.922 39 H 0.087 0.913 40 H 0.052 0.948 41 H 0.251 0.749 42 H 0.106 0.894 43 H 0.093 0.907 44 H 0.069 0.931 45 H 0.104 0.896 46 H 0.023 0.977 47 H 0.075 0.925 48 H 0.062 0.938 49 H 0.037 0.963 50 H 0.052 0.948 Dipole moment (debyes) X Y Z Total from point charges 10.437 24.027 -8.394 27.508 hybrid contribution -0.480 -1.464 0.720 1.701 sum 9.958 22.563 -7.674 25.829 Atomic orbital electron populations 1.20395 0.84715 1.04481 1.04017 1.22365 0.99066 0.86692 0.96678 1.70403 1.00971 1.30597 1.20987 1.27444 0.96402 0.79101 0.94026 1.20733 0.89219 0.96166 1.00022 1.21125 0.96861 0.99874 0.93197 1.21785 0.95026 1.00112 1.02883 1.21890 0.97458 1.00465 1.00919 1.84427 1.28858 1.24429 1.69820 1.22634 0.82073 0.95629 1.18789 1.16507 0.85648 0.82009 0.76685 1.90874 1.17085 1.82391 1.52035 1.45822 1.10030 1.05573 1.73255 1.21415 0.98751 0.78650 0.97588 0.91345 1.21624 0.96866 0.94317 1.01482 1.22014 1.00999 0.95883 0.97886 1.20752 0.90829 0.94147 0.89802 1.44232 1.23185 1.01178 1.64389 1.19412 0.89969 0.98354 1.31998 0.92682 1.25731 0.99967 0.99548 0.98776 1.70167 1.26513 1.12829 1.48006 0.85290 0.79866 0.78161 0.77284 1.20774 1.21590 1.19965 1.21199 0.97354 0.85334 0.94347 0.89713 0.88752 0.89925 0.85900 0.85547 0.91624 0.91161 0.92004 0.91202 0.92150 0.91313 0.94815 0.74861 0.89380 0.90682 0.93083 0.89558 0.97709 0.92512 0.93833 0.96335 0.94842 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.08 -1.95 9.87 71.23 0.70 -1.24 16 2 C 0.08 2.08 7.16 41.83 0.30 2.38 16 3 N -0.50 -12.16 10.52 -291.08 -3.06 -15.22 16 4 C 0.24 4.73 6.80 88.29 0.60 5.33 16 5 C -0.02 -0.25 5.32 29.85 0.16 -0.09 16 6 C -0.09 -0.97 2.91 -10.79 -0.03 -1.00 16 7 C -0.14 -0.88 9.19 71.98 0.66 -0.21 16 8 C -0.15 -2.04 9.00 71.98 0.65 -1.39 16 9 O -0.19 -4.42 10.57 -7.10 -0.08 -4.50 16 10 C -0.14 -3.89 7.18 24.04 0.17 -3.71 16 11 C 0.61 19.87 7.76 86.46 0.67 20.54 16 12 O -0.54 -21.52 14.46 -4.32 -0.06 -21.59 16 13 N -0.70 -20.55 5.08 -446.11 -2.26 -22.81 16 14 C 0.14 5.02 2.60 45.07 0.12 5.14 16 15 H 0.07 2.77 7.58 -2.39 -0.02 2.76 16 16 C -0.10 -3.11 5.36 30.62 0.16 -2.94 16 17 C -0.13 -4.55 6.08 30.67 0.19 -4.36 16 18 C 0.17 8.10 5.31 86.36 0.46 8.56 16 19 N -0.61 -31.62 2.99 -699.09 -2.09 -33.71 16 20 C -0.27 -15.49 9.59 84.03 0.81 -14.69 16 21 H 0.06 3.25 7.89 -2.91 -0.02 3.23 16 22 C -0.04 -2.54 4.91 84.86 0.42 -2.13 16 23 N -0.93 -55.34 11.19 21.65 0.24 -55.09 16 24 Si 0.97 46.27 29.59 68.60 2.03 48.30 16 25 H -0.28 -13.14 7.11 99.48 0.71 -12.43 16 26 H -0.29 -13.70 7.11 99.48 0.71 -12.99 16 27 H -0.27 -12.87 7.11 99.48 0.71 -12.16 16 28 C 0.14 6.47 6.09 86.36 0.53 6.99 16 29 H 0.08 2.02 8.14 -2.38 -0.02 2.00 16 30 H 0.09 1.90 8.14 -2.38 -0.02 1.88 16 31 H 0.08 2.29 6.47 -2.38 -0.02 2.27 16 32 H 0.12 0.72 8.14 -2.39 -0.02 0.70 16 33 H 0.13 0.96 8.14 -2.39 -0.02 0.94 16 34 H 0.07 0.86 8.14 -2.39 -0.02 0.84 16 35 H 0.07 0.31 8.14 -2.39 -0.02 0.29 16 36 H 0.06 0.41 8.14 -2.39 -0.02 0.39 16 37 H 0.07 0.31 8.14 -2.39 -0.02 0.30 16 38 H 0.06 0.76 8.14 -2.39 -0.02 0.74 16 39 H 0.07 0.80 8.14 -2.39 -0.02 0.78 16 40 H 0.03 0.64 6.81 -2.39 -0.02 0.62 16 41 H 0.41 9.66 8.40 -92.71 -0.78 8.88 16 42 H 0.09 2.08 8.14 -2.39 -0.02 2.06 16 43 H 0.07 2.06 8.14 -2.39 -0.02 2.04 16 44 H 0.05 1.89 8.14 -2.38 -0.02 1.87 16 45 H 0.09 2.56 8.14 -2.39 -0.02 2.54 16 46 H 0.00 0.24 8.14 -2.39 -0.02 0.22 16 47 H 0.06 3.07 6.04 -2.39 -0.01 3.06 16 48 H 0.25 14.45 8.31 -92.71 -0.77 13.68 16 49 H 0.02 0.83 8.14 -2.39 -0.02 0.81 16 50 H 0.03 1.63 7.93 -2.39 -0.02 1.61 16 Total: -1.00 -71.97 400.53 1.43 -70.55 By element: Atomic # 1 Polarization: 16.74 SS G_CDS: 0.15 Total: 16.90 kcal Atomic # 6 Polarization: 10.62 SS G_CDS: 6.56 Total: 17.18 kcal Atomic # 7 Polarization: -119.66 SS G_CDS: -7.18 Total: -126.84 kcal Atomic # 8 Polarization: -25.95 SS G_CDS: -0.14 Total: -26.09 kcal Atomic # 14 Polarization: 46.27 SS G_CDS: 2.03 Total: 48.30 kcal Total: -71.97 1.43 -70.55 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001008803647.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 34.020 kcal (2) G-P(sol) polarization free energy of solvation -71.974 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -37.954 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.425 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -70.549 kcal (6) G-S(sol) free energy of system = (1) + (5) -36.528 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.24 seconds