Wall clock time and date at job start Tue Mar 31 2020 20:11:29 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50700 * 1 3 3 N 1.33691 * 126.27120 * 2 1 4 4 C 1.30610 * 108.99749 * 180.27012 * 3 2 1 5 5 C 1.50706 * 125.42634 * 179.75188 * 4 3 2 6 6 C 1.52999 * 109.46874 * 299.97731 * 5 4 3 7 7 C 1.52995 * 109.47148 * 59.97655 * 5 4 3 8 8 O 1.33663 * 109.15617 * 359.72929 * 4 3 2 9 9 C 1.35350 * 107.67886 * 359.97438 * 8 4 3 10 10 C 1.46723 * 126.64085 * 180.02562 * 9 8 4 11 11 O 1.21682 * 119.99924 * 180.02562 * 10 9 8 12 12 N 1.34778 * 119.99912 * 0.02562 * 10 9 8 13 13 C 1.46507 * 119.99643 * 179.97438 * 12 10 9 14 14 C 1.53001 * 109.46949 * 180.02562 * 13 12 10 15 15 H 1.09000 * 109.52446 * 54.92410 * 14 13 12 16 16 C 1.53040 * 109.49747 * 174.99934 * 14 13 12 17 17 C 1.53037 * 109.52613 * 181.31207 * 16 14 13 18 18 C 1.53191 * 109.31196 * 298.64307 * 17 16 14 19 19 N 1.46926 * 108.77877 * 54.63626 * 18 17 16 20 20 C 1.36940 * 120.62904 * 126.40973 * 19 18 17 21 21 H 1.07997 * 120.00181 * 332.56467 * 20 19 18 22 22 C 1.38817 * 119.99599 * 152.56537 * 20 19 18 23 23 N 1.31614 * 119.99713 * 159.28460 * 22 20 19 24 24 Si 1.86796 * 120.00079 * 339.28982 * 22 20 19 25 25 H 1.48498 * 109.47390 * 92.94426 * 24 22 20 26 26 H 1.48501 * 109.47116 * 212.94505 * 24 22 20 27 27 H 1.48504 * 109.47242 * 332.94440 * 24 22 20 28 28 C 1.46922 * 118.73545 * 306.39584 * 19 18 17 29 29 H 1.09004 * 109.47337 * 270.18810 * 1 2 3 30 30 H 1.08997 * 109.47300 * 30.19077 * 1 2 3 31 31 H 1.09001 * 109.46861 * 150.18928 * 1 2 3 32 32 H 1.09003 * 109.47081 * 179.97438 * 5 4 3 33 33 H 1.08994 * 109.47108 * 59.99926 * 6 5 4 34 34 H 1.09003 * 109.46961 * 179.97438 * 6 5 4 35 35 H 1.09001 * 109.47194 * 299.99558 * 6 5 4 36 36 H 1.08999 * 109.47766 * 60.00018 * 7 5 4 37 37 H 1.08995 * 109.47502 * 180.02562 * 7 5 4 38 38 H 1.09003 * 109.47172 * 299.99996 * 7 5 4 39 39 H 0.96999 * 120.00498 * 0.02562 * 12 10 9 40 40 H 1.09001 * 109.46884 * 60.00729 * 13 12 10 41 41 H 1.08994 * 109.47126 * 300.00256 * 13 12 10 42 42 H 1.08997 * 109.45639 * 61.30129 * 16 14 13 43 43 H 1.08998 * 109.46168 * 301.32469 * 16 14 13 44 44 H 1.08996 * 109.49961 * 58.59706 * 17 16 14 45 45 H 1.09000 * 109.49502 * 178.69510 * 17 16 14 46 46 H 1.09005 * 109.58874 * 174.42419 * 18 17 16 47 47 H 1.09004 * 109.58874 * 294.70299 * 18 17 16 48 48 H 0.97006 * 119.99827 * 179.97438 * 23 22 20 49 49 H 1.09004 * 109.58665 * 173.39825 * 28 19 18 50 50 H 1.09002 * 109.58641 * 293.66974 * 28 19 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 7 2.2979 1.0778 0.0000 4 6 3.5451 0.6900 -0.0058 5 6 4.7439 1.6033 -0.0131 6 6 4.7064 2.4840 -1.2637 7 6 4.7186 2.4881 1.2347 8 8 3.5890 -0.6459 -0.0037 9 6 2.3137 -1.0991 0.0042 10 6 1.8828 -2.5016 0.0096 11 8 0.6968 -2.7736 0.0163 12 7 2.8006 -3.4885 0.0072 13 6 2.3703 -4.8890 0.0132 14 6 3.5994 -5.8001 0.0096 15 1 4.2478 -5.5405 0.8464 16 6 3.1545 -7.2585 0.1415 17 6 4.3849 -8.1680 0.1709 18 6 5.1592 -8.0153 -1.1421 19 7 5.4650 -6.5930 -1.3482 20 6 6.7511 -6.1818 -1.5766 21 1 7.5788 -6.7573 -1.1893 22 6 6.9907 -5.0253 -2.3059 23 7 8.1455 -4.4039 -2.1935 24 14 5.6744 -4.3509 -3.4468 25 1 4.8538 -3.3500 -2.7189 26 1 6.3185 -3.7050 -4.6187 27 1 4.8043 -5.4617 -3.9100 28 6 4.3645 -5.6205 -1.3050 29 1 -0.3634 0.0034 1.0277 30 1 -0.3634 0.8882 -0.5168 31 1 -0.3633 -0.8917 -0.5109 32 1 5.6557 1.0060 -0.0165 33 1 3.7947 3.0812 -1.2603 34 1 5.5732 3.1448 -1.2688 35 1 4.7245 1.8536 -2.1527 36 1 4.7452 1.8608 2.1257 37 1 5.5853 3.1490 1.2292 38 1 3.8068 3.0855 1.2381 39 1 3.7461 -3.2717 0.0023 40 1 1.7677 -5.0876 -0.8731 41 1 1.7772 -5.0830 0.9068 42 1 2.5263 -7.5248 -0.7085 43 1 2.5885 -7.3834 1.0646 44 1 5.0259 -7.8861 1.0061 45 1 4.0685 -9.2044 0.2881 46 1 6.0874 -8.5843 -1.0874 47 1 4.5527 -8.3844 -1.9692 48 1 8.3131 -3.5959 -2.7034 49 1 4.7682 -4.6093 -1.3577 50 1 3.6935 -5.7903 -2.1470 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001023637800.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 20:11:29 Heat of formation + Delta-G solvation = -12.763891 kcal Electronic energy + Delta-G solvation = -30054.821813 eV Core-core repulsion = 26083.647689 eV Total energy + Delta-G solvation = -3971.174123 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 335.200 amu Computer time = 1.28 seconds Orbital eigenvalues (eV) -43.54720 -39.66229 -38.12539 -36.10266 -35.48179 -34.74755 -33.15046 -31.44908 -30.95360 -30.57051 -28.09177 -27.48916 -25.85091 -25.34361 -24.23441 -22.65385 -21.88037 -20.97616 -20.75309 -20.46163 -19.45881 -18.10823 -17.05618 -16.87789 -16.39585 -16.01041 -15.64424 -14.98839 -14.76894 -14.58593 -14.26212 -14.06359 -13.93651 -13.51654 -13.34413 -13.33292 -13.30953 -13.18444 -12.89292 -12.53188 -12.47332 -12.42112 -12.14517 -12.01214 -11.68100 -11.60955 -11.51669 -11.38384 -11.04156 -10.88199 -10.84180 -10.65992 -10.58702 -10.20118 -10.18149 -9.91193 -9.75850 -9.51766 -9.20067 -8.78630 -8.67660 -7.03749 -6.02081 -3.37462 0.74111 2.28224 2.29112 3.04849 3.15231 3.24004 3.42833 3.45284 3.70124 4.45149 4.49085 4.55435 4.70926 4.71683 4.75725 4.94335 5.10103 5.18252 5.23853 5.31572 5.35022 5.36357 5.37887 5.49781 5.52553 5.55404 5.56402 5.63281 5.72085 5.74919 5.76737 5.82586 5.91693 5.96113 5.96857 6.04796 6.06087 6.20931 6.25096 6.28476 6.38557 6.50314 6.52994 6.64068 6.65198 6.91782 7.32259 7.56420 7.89538 8.02187 8.26513 8.87636 9.65240 10.03612 11.13745 Molecular weight = 335.20amu Principal moments of inertia in cm(-1) A = 0.010887 B = 0.003979 C = 0.003196 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2571.249552 B = 7035.433362 C = 8759.837199 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.078 4.078 2 C 0.079 3.921 3 N -0.485 5.485 4 C 0.228 3.772 5 C -0.004 4.004 6 C -0.144 4.144 7 C -0.142 4.142 8 O -0.183 6.183 9 C -0.120 4.120 10 C 0.608 3.392 11 O -0.522 6.522 12 N -0.712 5.712 13 C 0.125 3.875 14 C -0.120 4.120 15 H 0.081 0.919 16 C -0.100 4.100 17 C -0.134 4.134 18 C 0.146 3.854 19 N -0.605 5.605 20 C -0.260 4.260 21 H 0.087 0.913 22 C 0.025 3.975 23 N -0.906 5.906 24 Si 0.877 3.123 25 H -0.289 1.289 26 H -0.302 1.302 27 H -0.271 1.271 28 C 0.133 3.867 29 H 0.080 0.920 30 H 0.075 0.925 31 H 0.094 0.906 32 H 0.105 0.895 33 H 0.069 0.931 34 H 0.075 0.925 35 H 0.061 0.939 36 H 0.060 0.940 37 H 0.074 0.926 38 H 0.069 0.931 39 H 0.410 0.590 40 H 0.070 0.930 41 H 0.071 0.929 42 H 0.059 0.941 43 H 0.055 0.945 44 H 0.062 0.938 45 H 0.056 0.944 46 H 0.063 0.937 47 H 0.022 0.978 48 H 0.262 0.738 49 H 0.069 0.931 50 H 0.026 0.974 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -10.706 8.979 6.555 15.434 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.135 4.135 2 C -0.046 4.046 3 N -0.215 5.215 4 C 0.022 3.978 5 C -0.023 4.023 6 C -0.202 4.202 7 C -0.200 4.200 8 O -0.069 6.069 9 C -0.175 4.175 10 C 0.394 3.606 11 O -0.401 6.401 12 N -0.362 5.362 13 C 0.002 3.998 14 C -0.141 4.141 15 H 0.099 0.901 16 C -0.138 4.138 17 C -0.174 4.174 18 C 0.020 3.980 19 N -0.329 5.329 20 C -0.388 4.388 21 H 0.104 0.896 22 C -0.174 4.174 23 N -0.548 5.548 24 Si 0.708 3.292 25 H -0.217 1.217 26 H -0.231 1.231 27 H -0.196 1.196 28 C 0.007 3.993 29 H 0.099 0.901 30 H 0.094 0.906 31 H 0.113 0.887 32 H 0.123 0.877 33 H 0.088 0.912 34 H 0.094 0.906 35 H 0.080 0.920 36 H 0.079 0.921 37 H 0.093 0.907 38 H 0.088 0.912 39 H 0.246 0.754 40 H 0.088 0.912 41 H 0.089 0.911 42 H 0.078 0.922 43 H 0.073 0.927 44 H 0.081 0.919 45 H 0.075 0.925 46 H 0.081 0.919 47 H 0.040 0.960 48 H 0.072 0.928 49 H 0.087 0.913 50 H 0.044 0.956 Dipole moment (debyes) X Y Z Total from point charges -11.516 9.442 6.487 16.244 hybrid contribution 0.131 -0.137 -0.757 0.780 sum -11.386 9.305 5.730 15.782 Atomic orbital electron populations 1.20361 0.85314 1.04260 1.03563 1.22042 0.98264 0.86393 0.97852 1.70263 1.00232 1.30882 1.20120 1.26599 0.95654 0.79183 0.96336 1.19828 0.90696 0.93238 0.98580 1.21848 1.03428 0.99393 0.95489 1.21835 1.03443 0.99314 0.95385 1.84516 1.29660 1.23738 1.68994 1.22925 0.81446 0.96349 1.16779 1.16295 0.85752 0.81377 0.77189 1.90823 1.15629 1.82028 1.51573 1.46036 1.10329 1.06597 1.73253 1.21570 0.97420 0.78555 1.02287 1.21987 0.95450 0.94793 1.01837 0.90052 1.21340 0.97740 0.93767 1.00989 1.21988 0.96998 0.97932 1.00440 1.20962 0.97725 0.85823 0.93484 1.44338 1.04257 1.00690 1.83567 1.18950 0.82407 1.09029 1.28434 0.89555 1.25259 0.95838 0.97645 0.98618 1.69834 1.23989 1.18501 1.42524 0.87052 0.81769 0.78626 0.81782 1.21724 1.23063 1.19625 1.21370 0.90039 0.94648 0.93253 0.90112 0.90580 0.88693 0.87727 0.91164 0.90635 0.92021 0.92124 0.90681 0.91174 0.75408 0.91155 0.91092 0.92240 0.92655 0.91915 0.92497 0.91894 0.95983 0.92766 0.91266 0.95608 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.08 -0.94 9.87 36.01 0.36 -0.59 16 2 C 0.08 1.18 7.16 -82.47 -0.59 0.59 16 3 N -0.49 -7.03 11.26 -7.07 -0.08 -7.11 16 4 C 0.23 3.17 6.82 -12.79 -0.09 3.09 16 5 C 0.00 -0.04 3.39 -91.77 -0.31 -0.35 16 6 C -0.14 -1.30 9.18 37.16 0.34 -0.96 16 7 C -0.14 -1.17 9.18 37.16 0.34 -0.83 16 8 O -0.18 -2.94 10.57 4.41 0.05 -2.89 16 9 C -0.12 -1.94 7.18 -36.84 -0.26 -2.21 16 10 C 0.61 10.15 7.79 -12.83 -0.10 10.05 16 11 O -0.52 -9.16 14.80 5.20 0.08 -9.09 16 12 N -0.71 -11.58 5.33 -61.60 -0.33 -11.91 16 13 C 0.13 1.90 5.07 -4.04 -0.02 1.88 16 14 C -0.12 -1.98 2.37 -90.52 -0.21 -2.20 16 15 H 0.08 1.40 8.14 -51.93 -0.42 0.97 16 16 C -0.10 -1.45 5.17 -26.69 -0.14 -1.59 16 17 C -0.13 -2.07 6.08 -26.61 -0.16 -2.23 16 18 C 0.15 2.77 6.52 -3.71 -0.02 2.75 16 19 N -0.61 -13.95 2.77 -172.34 -0.48 -14.42 16 20 C -0.26 -7.09 10.03 -15.06 -0.15 -7.24 16 21 H 0.09 2.51 8.06 -52.49 -0.42 2.09 16 22 C 0.03 0.72 5.23 -17.43 -0.09 0.63 16 23 N -0.91 -27.06 13.97 55.49 0.78 -26.28 16 24 Si 0.88 22.21 24.35 -169.99 -4.14 18.07 16 25 H -0.29 -7.05 6.62 56.52 0.37 -6.67 16 26 H -0.30 -7.84 7.11 56.52 0.40 -7.44 16 27 H -0.27 -6.85 6.64 56.52 0.38 -6.47 16 28 C 0.13 2.78 3.29 -3.73 -0.01 2.77 16 29 H 0.08 0.87 8.14 -51.93 -0.42 0.45 16 30 H 0.08 0.79 8.14 -51.93 -0.42 0.37 16 31 H 0.09 1.22 6.48 -51.93 -0.34 0.88 16 32 H 0.10 1.02 8.14 -51.93 -0.42 0.59 16 33 H 0.07 0.65 8.14 -51.93 -0.42 0.22 16 34 H 0.07 0.51 8.14 -51.93 -0.42 0.09 16 35 H 0.06 0.62 8.14 -51.93 -0.42 0.20 16 36 H 0.06 0.52 8.14 -51.93 -0.42 0.10 16 37 H 0.07 0.46 8.14 -51.93 -0.42 0.04 16 38 H 0.07 0.61 8.14 -51.93 -0.42 0.18 16 39 H 0.41 6.87 7.50 -40.82 -0.31 6.56 16 40 H 0.07 1.08 8.14 -51.93 -0.42 0.66 16 41 H 0.07 0.98 8.14 -51.93 -0.42 0.56 16 42 H 0.06 0.84 8.14 -51.93 -0.42 0.42 16 43 H 0.05 0.69 8.14 -51.93 -0.42 0.26 16 44 H 0.06 1.01 8.14 -51.93 -0.42 0.59 16 45 H 0.06 0.74 8.14 -51.93 -0.42 0.31 16 46 H 0.06 1.20 7.93 -51.93 -0.41 0.78 16 47 H 0.02 0.41 8.14 -51.93 -0.42 -0.01 16 48 H 0.26 7.47 8.31 -40.82 -0.34 7.13 16 49 H 0.07 1.58 3.72 -51.93 -0.19 1.39 16 50 H 0.03 0.56 7.07 -51.93 -0.37 0.19 16 LS Contribution 395.19 15.07 5.96 5.96 Total: -1.00 -31.96 395.19 -7.71 -39.67 By element: Atomic # 1 Polarization: 12.86 SS G_CDS: -8.41 Total: 4.45 kcal Atomic # 6 Polarization: 4.68 SS G_CDS: -1.13 Total: 3.55 kcal Atomic # 7 Polarization: -59.62 SS G_CDS: -0.11 Total: -59.72 kcal Atomic # 8 Polarization: -12.10 SS G_CDS: 0.12 Total: -11.97 kcal Atomic # 14 Polarization: 22.21 SS G_CDS: -4.14 Total: 18.07 kcal Total LS contribution 5.96 Total: 5.96 kcal Total: -31.96 -7.71 -39.67 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001023637800.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 26.911 kcal (2) G-P(sol) polarization free energy of solvation -31.963 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -5.052 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.712 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.675 kcal (6) G-S(sol) free energy of system = (1) + (5) -12.764 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.28 seconds