Wall clock time and date at job start Tue Mar 31 2020 19:05:20 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50697 * 1 3 3 O 1.34257 * 126.52757 * 2 1 4 4 C 1.34047 * 108.22683 * 180.23567 * 3 2 1 5 5 C 1.50705 * 125.37521 * 179.80707 * 4 3 2 6 6 C 1.53000 * 109.47001 * 299.95336 * 5 4 3 7 7 C 1.52998 * 109.47190 * 59.95788 * 5 4 3 8 8 N 1.29933 * 109.24679 * 359.76684 * 4 3 2 9 9 C 1.36067 * 108.47332 * 0.02562 * 8 4 3 10 10 C 1.47419 * 126.44436 * 179.97438 * 9 8 4 11 11 O 1.21616 * 119.99938 * 180.02562 * 10 9 8 12 12 N 1.34772 * 120.00535 * 0.02562 * 10 9 8 13 13 C 1.46500 * 120.00336 * 179.97438 * 12 10 9 14 14 C 1.53005 * 109.47174 * 180.02562 * 13 12 10 15 15 H 1.08997 * 109.69701 * 60.13146 * 14 13 12 16 16 C 1.53626 * 109.66484 * 180.72313 * 14 13 12 17 17 C 1.53033 * 109.24093 * 174.54924 * 16 14 13 18 18 C 1.53040 * 109.54083 * 298.51466 * 17 16 14 19 19 C 1.53186 * 109.31279 * 61.36528 * 18 17 16 20 20 N 1.46925 * 109.58679 * 299.78004 * 14 13 12 21 21 C 1.36938 * 120.63154 * 6.62382 * 20 14 13 22 22 H 1.08007 * 119.99703 * 328.56452 * 21 20 14 23 23 C 1.38810 * 120.00164 * 148.84139 * 21 20 14 24 24 N 1.31612 * 120.00169 * 162.69555 * 23 21 20 25 25 Si 1.86798 * 119.99716 * 342.69547 * 23 21 20 26 26 H 1.48511 * 109.47034 * 88.90313 * 25 23 21 27 27 H 1.48497 * 109.47278 * 208.90255 * 25 23 21 28 28 H 1.48502 * 109.47341 * 328.90763 * 25 23 21 29 29 H 1.08995 * 109.46944 * 270.15936 * 1 2 3 30 30 H 1.08998 * 109.47390 * 30.15945 * 1 2 3 31 31 H 1.08997 * 109.47333 * 150.16266 * 1 2 3 32 32 H 1.09004 * 109.46815 * 179.97438 * 5 4 3 33 33 H 1.08995 * 109.47335 * 60.00457 * 6 5 4 34 34 H 1.09004 * 109.46853 * 180.02562 * 6 5 4 35 35 H 1.08998 * 109.47134 * 299.99760 * 6 5 4 36 36 H 1.09004 * 109.46872 * 299.99512 * 7 5 4 37 37 H 1.08995 * 109.47201 * 59.99815 * 7 5 4 38 38 H 1.08999 * 109.47081 * 180.02562 * 7 5 4 39 39 H 0.97000 * 120.00040 * 0.02562 * 12 10 9 40 40 H 1.08998 * 109.46813 * 60.00524 * 13 12 10 41 41 H 1.09001 * 109.47361 * 300.00289 * 13 12 10 42 42 H 1.09000 * 109.63139 * 54.55486 * 16 14 13 43 43 H 1.08998 * 109.45424 * 294.43988 * 16 14 13 44 44 H 1.09005 * 109.46113 * 178.48936 * 17 16 14 45 45 H 1.09007 * 109.44790 * 58.52947 * 17 16 14 46 46 H 1.09007 * 109.49450 * 301.41265 * 18 17 16 47 47 H 1.09001 * 109.52343 * 181.33769 * 18 17 16 48 48 H 1.09004 * 109.58348 * 185.58524 * 19 18 17 49 49 H 1.08999 * 109.70715 * 65.22547 * 19 18 17 50 50 H 0.96995 * 120.00366 * 180.02562 * 24 23 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 8 2.3061 1.0789 0.0000 4 6 3.5787 0.6579 -0.0052 5 6 4.7929 1.5507 -0.0112 6 6 4.7717 2.4321 -1.2616 7 6 4.7815 2.4355 1.2369 8 7 3.6002 -0.6412 -0.0035 9 6 2.3170 -1.0936 0.0024 10 6 1.8854 -2.5032 0.0057 11 8 0.7003 -2.7762 0.0106 12 7 2.8040 -3.4893 0.0032 13 6 2.3750 -4.8901 0.0070 14 6 3.6050 -5.8002 0.0038 15 1 4.2076 -5.6065 0.8911 16 6 3.1601 -7.2706 -0.0105 17 6 4.3913 -8.1686 -0.1508 18 6 5.0971 -7.8663 -1.4747 19 6 5.5606 -6.4063 -1.4799 20 7 4.4053 -5.5423 -1.2010 21 6 4.0840 -4.5130 -2.0450 22 1 3.0530 -4.2140 -2.1640 23 6 5.0827 -3.8575 -2.7520 24 7 4.7734 -3.1193 -3.7967 25 14 6.8658 -4.0234 -2.2205 26 1 7.4749 -5.2000 -2.8913 27 1 7.6116 -2.7965 -2.5997 28 1 6.9286 -4.2057 -0.7480 29 1 -0.3633 0.0029 1.0276 30 1 -0.3634 0.8885 -0.5163 31 1 -0.3634 -0.8914 -0.5113 32 1 5.6944 0.9378 -0.0142 33 1 3.8703 3.0449 -1.2590 34 1 5.6502 3.0774 -1.2661 35 1 4.7799 1.8016 -2.1507 36 1 3.8800 3.0483 1.2395 37 1 4.7966 1.8076 2.1276 38 1 5.6594 3.0815 1.2323 39 1 3.7492 -3.2716 -0.0003 40 1 1.7737 -5.0883 -0.8802 41 1 1.7810 -5.0858 0.8998 42 1 2.4873 -7.4414 -0.8509 43 1 2.6445 -7.5029 0.9213 44 1 4.0822 -9.2138 -0.1344 45 1 5.0749 -7.9791 0.6768 46 1 4.4061 -8.0317 -2.3014 47 1 5.9604 -8.5226 -1.5853 48 1 5.9750 -6.1580 -2.4570 49 1 6.3206 -6.2592 -0.7125 50 1 5.4713 -2.6616 -4.2909 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001024437721.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 19:05:20 Heat of formation + Delta-G solvation = -4.911968 kcal Electronic energy + Delta-G solvation = -30733.952251 eV Core-core repulsion = 26763.118612 eV Total energy + Delta-G solvation = -3970.833638 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 335.200 amu Computer time = 1.18 seconds Orbital eigenvalues (eV) -43.14504 -39.10517 -37.85906 -35.74933 -34.42786 -34.22520 -32.98446 -31.72099 -30.87862 -30.62400 -27.34273 -27.31522 -26.00691 -24.71795 -23.29228 -22.63290 -22.25430 -21.01415 -20.36746 -19.65183 -19.14296 -17.35049 -16.67154 -16.41143 -15.85435 -15.63597 -15.26944 -14.92285 -14.81783 -14.32662 -13.89843 -13.71888 -13.67721 -13.47176 -13.39985 -13.18772 -13.06228 -12.79317 -12.43122 -12.37238 -12.32548 -12.07346 -11.98280 -11.67844 -11.59891 -11.39995 -11.27931 -11.11863 -10.84970 -10.76533 -10.60972 -10.41516 -10.36111 -10.16512 -9.91051 -9.62792 -9.45169 -9.34655 -8.64590 -8.51381 -8.12261 -6.88206 -5.90682 -3.31805 1.43487 2.42206 2.71059 3.32713 3.49134 3.50928 3.70234 3.94305 4.09793 4.54738 4.71477 4.84914 4.93207 4.97102 5.07978 5.27462 5.31339 5.37368 5.41706 5.45345 5.46720 5.54370 5.56040 5.60836 5.65455 5.76077 5.79069 5.83360 5.90402 5.98894 6.04601 6.12193 6.12848 6.14075 6.19443 6.23837 6.25872 6.41272 6.45049 6.46263 6.50055 6.60154 6.73064 6.78474 7.01409 7.18920 7.82165 8.00071 8.34524 8.39785 8.87658 8.96252 9.74365 10.11534 11.24225 Molecular weight = 335.20amu Principal moments of inertia in cm(-1) A = 0.012076 B = 0.004380 C = 0.003578 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2318.120534 B = 6391.830085 C = 7823.732684 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.069 4.069 2 C 0.022 3.978 3 O -0.199 6.199 4 C 0.191 3.809 5 C 0.004 3.996 6 C -0.150 4.150 7 C -0.147 4.147 8 N -0.441 5.441 9 C -0.056 4.056 10 C 0.597 3.403 11 O -0.561 6.561 12 N -0.673 5.673 13 C 0.135 3.865 14 C 0.162 3.838 15 H 0.037 0.963 16 C -0.127 4.127 17 C -0.108 4.108 18 C -0.135 4.135 19 C 0.125 3.875 20 N -0.604 5.604 21 C -0.263 4.263 22 H 0.091 0.909 23 C 0.034 3.966 24 N -0.902 5.902 25 Si 0.883 3.117 26 H -0.290 1.290 27 H -0.306 1.306 28 H -0.272 1.272 29 H 0.085 0.915 30 H 0.074 0.926 31 H 0.112 0.888 32 H 0.114 0.886 33 H 0.061 0.939 34 H 0.071 0.929 35 H 0.066 0.934 36 H 0.061 0.939 37 H 0.061 0.939 38 H 0.071 0.929 39 H 0.419 0.581 40 H 0.072 0.928 41 H 0.059 0.941 42 H 0.066 0.934 43 H 0.055 0.945 44 H 0.050 0.950 45 H 0.053 0.947 46 H 0.063 0.937 47 H 0.050 0.950 48 H 0.072 0.928 49 H 0.023 0.977 50 H 0.261 0.739 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.821 5.919 9.905 11.681 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.126 4.126 2 C -0.034 4.034 3 O -0.086 6.086 4 C -0.018 4.018 5 C -0.015 4.015 6 C -0.208 4.208 7 C -0.205 4.205 8 N -0.170 5.170 9 C -0.176 4.176 10 C 0.383 3.617 11 O -0.442 6.442 12 N -0.322 5.322 13 C 0.011 3.989 14 C 0.056 3.944 15 H 0.054 0.946 16 C -0.167 4.167 17 C -0.146 4.146 18 C -0.174 4.174 19 C 0.000 4.000 20 N -0.329 5.329 21 C -0.391 4.391 22 H 0.109 0.891 23 C -0.166 4.166 24 N -0.545 5.545 25 Si 0.714 3.286 26 H -0.218 1.218 27 H -0.234 1.234 28 H -0.197 1.197 29 H 0.104 0.896 30 H 0.093 0.907 31 H 0.130 0.870 32 H 0.132 0.868 33 H 0.080 0.920 34 H 0.090 0.910 35 H 0.085 0.915 36 H 0.080 0.920 37 H 0.080 0.920 38 H 0.090 0.910 39 H 0.258 0.742 40 H 0.090 0.910 41 H 0.078 0.922 42 H 0.084 0.916 43 H 0.074 0.926 44 H 0.069 0.931 45 H 0.072 0.928 46 H 0.082 0.918 47 H 0.069 0.931 48 H 0.090 0.910 49 H 0.041 0.959 50 H 0.071 0.929 Dipole moment (debyes) X Y Z Total from point charges -2.038 5.462 9.771 11.378 hybrid contribution 1.137 0.378 -0.040 1.199 sum -0.901 5.840 9.730 11.384 Atomic orbital electron populations 1.20497 0.82884 1.05136 1.04034 1.23611 0.94898 0.83460 1.01469 1.84229 1.17968 1.36275 1.70165 1.26062 0.83878 0.90246 1.01607 1.19723 0.90215 0.94242 0.97351 1.21891 1.02681 0.99518 0.96719 1.21881 1.02837 0.99420 0.96389 1.70831 1.21762 1.08591 1.15771 1.21568 0.88604 0.95820 1.11610 1.16632 0.85436 0.82648 0.77018 1.90697 1.16490 1.83450 1.53521 1.45759 1.10911 1.05114 1.70420 1.21309 0.96468 0.79983 1.01149 1.20840 0.91316 0.92176 0.90084 0.94581 1.22002 0.97632 0.96000 1.01076 1.21366 0.97215 0.98128 0.97866 1.22002 0.99615 0.98291 0.97540 1.21369 0.89904 0.89205 0.99499 1.44411 1.31598 1.33368 1.23550 1.18926 0.94384 1.07914 1.17848 0.89112 1.25295 0.97394 0.96762 0.97177 1.69797 1.32813 1.34033 1.17829 0.86990 0.86849 0.75386 0.79359 1.21834 1.23396 1.19669 0.89618 0.90677 0.86958 0.86798 0.91996 0.91043 0.91461 0.91972 0.92010 0.91026 0.74194 0.91002 0.92236 0.91566 0.92588 0.93082 0.92782 0.91800 0.93108 0.90968 0.95930 0.92932 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.07 -0.92 9.88 36.00 0.36 -0.57 16 2 C 0.02 0.37 7.44 -35.08 -0.26 0.11 16 3 O -0.20 -3.22 10.73 6.52 0.07 -3.15 16 4 C 0.19 3.19 6.81 -13.08 -0.09 3.10 16 5 C 0.00 0.05 3.39 -91.77 -0.31 -0.26 16 6 C -0.15 -1.68 9.18 37.16 0.34 -1.33 16 7 C -0.15 -1.41 9.18 37.16 0.34 -1.06 16 8 N -0.44 -8.84 11.06 -7.65 -0.08 -8.93 16 9 C -0.06 -1.12 6.99 -83.02 -0.58 -1.70 16 10 C 0.60 12.73 7.81 -12.52 -0.10 12.63 16 11 O -0.56 -12.21 14.80 5.26 0.08 -12.13 16 12 N -0.67 -14.25 3.84 -61.38 -0.24 -14.48 16 13 C 0.13 2.61 4.44 -4.04 -0.02 2.59 16 14 C 0.16 3.08 3.03 -67.37 -0.20 2.87 16 15 H 0.04 0.68 8.14 -51.93 -0.42 0.26 16 16 C -0.13 -2.03 5.40 -26.39 -0.14 -2.18 16 17 C -0.11 -1.64 5.88 -26.69 -0.16 -1.80 16 18 C -0.14 -2.35 6.08 -26.61 -0.16 -2.52 16 19 C 0.13 2.67 4.19 -3.71 -0.02 2.65 16 20 N -0.60 -13.65 2.71 -164.52 -0.45 -14.09 16 21 C -0.26 -6.96 7.42 -15.06 -0.11 -7.07 16 22 H 0.09 2.66 6.07 -52.48 -0.32 2.34 16 23 C 0.03 0.94 5.27 -17.43 -0.09 0.85 16 24 N -0.90 -27.25 13.97 55.49 0.78 -26.47 16 25 Si 0.88 22.18 24.32 -169.99 -4.13 18.04 16 26 H -0.29 -7.11 6.51 56.52 0.37 -6.74 16 27 H -0.31 -7.89 7.11 56.52 0.40 -7.49 16 28 H -0.27 -6.68 6.75 56.52 0.38 -6.30 16 29 H 0.09 0.98 8.14 -51.93 -0.42 0.56 16 30 H 0.07 0.81 8.14 -51.93 -0.42 0.39 16 31 H 0.11 1.69 6.48 -51.93 -0.34 1.35 16 32 H 0.11 1.45 8.14 -51.93 -0.42 1.03 16 33 H 0.06 0.65 8.14 -51.93 -0.42 0.23 16 34 H 0.07 0.62 8.14 -51.93 -0.42 0.20 16 35 H 0.07 0.89 8.14 -51.93 -0.42 0.46 16 36 H 0.06 0.57 8.14 -51.93 -0.42 0.15 16 37 H 0.06 0.61 8.14 -51.93 -0.42 0.19 16 38 H 0.07 0.53 8.14 -51.93 -0.42 0.10 16 39 H 0.42 9.49 7.12 -40.82 -0.29 9.20 16 40 H 0.07 1.53 7.42 -51.93 -0.39 1.15 16 41 H 0.06 1.03 8.14 -51.93 -0.42 0.60 16 42 H 0.07 1.11 8.14 -51.93 -0.42 0.69 16 43 H 0.06 0.76 8.14 -51.93 -0.42 0.34 16 44 H 0.05 0.67 8.14 -51.93 -0.42 0.25 16 45 H 0.05 0.80 8.14 -51.93 -0.42 0.37 16 46 H 0.06 1.16 8.14 -51.93 -0.42 0.74 16 47 H 0.05 0.78 8.14 -51.93 -0.42 0.36 16 48 H 0.07 1.70 4.64 -51.93 -0.24 1.46 16 49 H 0.02 0.48 7.05 -51.93 -0.37 0.11 16 50 H 0.26 7.58 8.31 -40.82 -0.34 7.24 16 LS Contribution 389.68 15.07 5.87 5.87 Total: -1.00 -32.16 389.68 -7.62 -39.79 By element: Atomic # 1 Polarization: 17.55 SS G_CDS: -8.31 Total: 9.23 kcal Atomic # 6 Polarization: 7.52 SS G_CDS: -1.20 Total: 6.32 kcal Atomic # 7 Polarization: -63.98 SS G_CDS: 0.01 Total: -63.97 kcal Atomic # 8 Polarization: -15.43 SS G_CDS: 0.15 Total: -15.28 kcal Atomic # 14 Polarization: 22.18 SS G_CDS: -4.13 Total: 18.04 kcal Total LS contribution 5.87 Total: 5.87 kcal Total: -32.16 -7.62 -39.79 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001024437721.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 34.873 kcal (2) G-P(sol) polarization free energy of solvation -32.162 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 2.712 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.624 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.785 kcal (6) G-S(sol) free energy of system = (1) + (5) -4.912 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.18 seconds