Wall clock time and date at job start Tue Mar 31 2020 19:05:24 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50698 * 1 3 3 O 1.34260 * 126.52623 * 2 1 4 4 C 1.34049 * 108.22486 * 180.23413 * 3 2 1 5 5 C 1.50703 * 125.38024 * 179.73640 * 4 3 2 6 6 C 1.53000 * 109.46675 * 300.03755 * 5 4 3 7 7 C 1.52997 * 109.47001 * 60.03250 * 5 4 3 8 8 N 1.29937 * 109.24557 * 359.76718 * 4 3 2 9 9 C 1.36068 * 108.47787 * 0.02562 * 8 4 3 10 10 C 1.47417 * 126.45003 * 179.97438 * 9 8 4 11 11 O 1.21613 * 120.00006 * 180.02562 * 10 9 8 12 12 N 1.34771 * 119.99930 * 0.02562 * 10 9 8 13 13 C 1.46500 * 119.99906 * 179.97438 * 12 10 9 14 14 C 1.53006 * 109.47188 * 180.02562 * 13 12 10 15 15 H 1.08998 * 109.58527 * 299.92919 * 14 13 12 16 16 C 1.53195 * 109.58505 * 179.49771 * 14 13 12 17 17 C 1.53041 * 109.31117 * 185.57621 * 16 14 13 18 18 C 1.53044 * 109.53753 * 61.36600 * 17 16 14 19 19 C 1.53195 * 109.31262 * 298.63627 * 18 17 16 20 20 N 1.46920 * 109.58469 * 60.21239 * 14 13 12 21 21 C 1.36940 * 120.63207 * 353.41516 * 20 14 13 22 22 H 1.07996 * 119.99877 * 31.17636 * 21 20 14 23 23 C 1.38815 * 119.99977 * 211.16628 * 21 20 14 24 24 N 1.31622 * 119.99828 * 13.81157 * 23 21 20 25 25 Si 1.86801 * 119.99868 * 193.80594 * 23 21 20 26 26 H 1.48494 * 109.47007 * 90.00482 * 25 23 21 27 27 H 1.48508 * 109.46782 * 210.00426 * 25 23 21 28 28 H 1.48496 * 109.47156 * 330.00122 * 25 23 21 29 29 H 1.09004 * 109.46913 * 270.16290 * 1 2 3 30 30 H 1.09000 * 109.47187 * 30.15938 * 1 2 3 31 31 H 1.08998 * 109.47230 * 150.16132 * 1 2 3 32 32 H 1.08992 * 109.47548 * 180.02562 * 5 4 3 33 33 H 1.08997 * 109.47600 * 299.99926 * 6 5 4 34 34 H 1.09002 * 109.47169 * 59.99846 * 6 5 4 35 35 H 1.08998 * 109.47159 * 179.97438 * 6 5 4 36 36 H 1.09006 * 109.46648 * 60.00807 * 7 5 4 37 37 H 1.09000 * 109.46953 * 180.02562 * 7 5 4 38 38 H 1.08989 * 109.48052 * 300.00572 * 7 5 4 39 39 H 0.96993 * 120.00304 * 359.73076 * 12 10 9 40 40 H 1.09003 * 109.47327 * 300.00572 * 13 12 10 41 41 H 1.08998 * 109.47450 * 60.00279 * 13 12 10 42 42 H 1.08997 * 109.50121 * 305.53417 * 16 14 13 43 43 H 1.09006 * 109.49603 * 65.63087 * 16 14 13 44 44 H 1.09000 * 109.46106 * 301.35158 * 17 16 14 45 45 H 1.09001 * 109.45099 * 181.38189 * 17 16 14 46 46 H 1.08994 * 109.49777 * 178.68195 * 18 17 16 47 47 H 1.09006 * 109.49376 * 58.58743 * 18 17 16 48 48 H 1.08998 * 109.58557 * 294.84187 * 19 18 17 49 49 H 1.08996 * 109.70041 * 174.48811 * 19 18 17 50 50 H 0.96996 * 119.99831 * 179.97438 * 24 23 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 8 2.3061 1.0789 0.0000 4 6 3.5788 0.6580 -0.0052 5 6 4.7930 1.5505 -0.0127 6 6 4.7703 2.4319 -1.2631 7 6 4.7830 2.4356 1.2353 8 7 3.6002 -0.6412 -0.0034 9 6 2.3170 -1.0937 0.0025 10 6 1.8853 -2.5032 0.0057 11 8 0.7002 -2.7762 0.0106 12 7 2.8040 -3.4893 0.0033 13 6 2.3750 -4.8901 0.0071 14 6 3.6049 -5.8002 0.0039 15 1 4.2000 -5.6071 -0.8886 16 6 3.1593 -7.2658 0.0205 17 6 4.3886 -8.1670 0.1576 18 6 5.1008 -7.8638 1.4778 19 6 5.5684 -6.4049 1.4778 20 7 4.4143 -5.5385 1.2018 21 6 4.0989 -4.5068 2.0453 22 1 3.0692 -4.2053 2.1681 23 6 5.1027 -3.8487 2.7426 24 7 6.3623 -4.0204 2.4014 25 14 4.6659 -2.7195 4.1650 26 1 4.6429 -3.5003 5.4279 27 1 5.6799 -1.6395 4.2691 28 1 3.3276 -2.1207 3.9288 29 1 -0.3633 0.0029 1.0277 30 1 -0.3633 0.8885 -0.5163 31 1 -0.3633 -0.8914 -0.5113 32 1 5.6944 0.9378 -0.0162 33 1 4.7773 1.8015 -2.1522 34 1 3.8688 3.0447 -1.2593 35 1 5.6482 3.0779 -1.2683 36 1 4.7993 1.8075 2.1261 37 1 5.6611 3.0814 1.2297 38 1 3.8817 3.0483 1.2392 39 1 3.7491 -3.2716 -0.0045 40 1 1.7809 -5.0858 0.8998 41 1 1.7736 -5.0884 -0.8801 42 1 2.4896 -7.4330 0.8641 43 1 2.6394 -7.4986 -0.9089 44 1 5.0694 -7.9815 -0.6731 45 1 4.0763 -9.2113 0.1450 46 1 5.9628 -8.5221 1.5857 47 1 4.4129 -8.0253 2.3078 48 1 6.3245 -6.2636 0.7055 49 1 5.9892 -6.1539 2.4514 50 1 7.0637 -3.5603 2.8884 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001024437722.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 19:05:24 Heat of formation + Delta-G solvation = -11.115437 kcal Electronic energy + Delta-G solvation = -30728.588525 eV Core-core repulsion = 26757.485884 eV Total energy + Delta-G solvation = -3971.102641 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 335.200 amu Computer time = 1.26 seconds Orbital eigenvalues (eV) -43.20993 -39.06747 -37.63316 -35.78837 -34.48201 -34.13599 -33.00422 -31.77961 -30.71273 -29.85612 -27.36030 -27.33740 -25.89682 -24.81004 -23.34390 -22.31830 -22.08208 -20.98912 -20.36199 -19.49601 -19.01849 -17.38571 -16.73308 -16.33084 -15.85189 -15.54891 -15.28220 -14.90484 -14.37322 -14.24170 -13.99252 -13.68517 -13.57250 -13.43634 -13.32736 -13.08294 -12.85791 -12.75408 -12.45073 -12.38040 -12.36391 -11.98091 -11.74896 -11.71795 -11.44201 -11.18952 -11.14767 -10.94532 -10.84769 -10.75076 -10.49971 -10.40826 -10.25201 -10.09878 -9.95383 -9.63187 -9.44661 -9.28321 -8.62888 -8.47741 -8.11813 -6.59221 -5.77720 -3.23198 1.36548 2.36216 2.64890 3.37277 3.43703 3.47267 3.69350 3.86703 4.06580 4.49867 4.67249 4.89602 4.90791 5.04763 5.24366 5.28488 5.37173 5.40001 5.43317 5.50321 5.55282 5.56073 5.61601 5.67205 5.71223 5.72798 5.80181 5.99667 6.00845 6.05891 6.07313 6.08635 6.17441 6.18941 6.27673 6.38407 6.43117 6.44584 6.62068 6.74474 6.76388 6.89170 7.01544 7.19840 7.41956 7.69375 7.77173 7.85827 8.34920 8.47126 8.86031 9.23098 9.84144 10.41868 11.29693 Molecular weight = 335.20amu Principal moments of inertia in cm(-1) A = 0.011712 B = 0.004333 C = 0.003692 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2390.160751 B = 6460.340625 C = 7582.250590 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.069 4.069 2 C 0.021 3.979 3 O -0.199 6.199 4 C 0.191 3.809 5 C 0.003 3.997 6 C -0.147 4.147 7 C -0.150 4.150 8 N -0.439 5.439 9 C -0.059 4.059 10 C 0.592 3.408 11 O -0.562 6.562 12 N -0.672 5.672 13 C 0.134 3.866 14 C 0.160 3.840 15 H 0.032 0.968 16 C -0.126 4.126 17 C -0.107 4.107 18 C -0.144 4.144 19 C 0.174 3.826 20 N -0.587 5.587 21 C -0.251 4.251 22 H 0.068 0.932 23 C 0.016 3.984 24 N -0.896 5.896 25 Si 0.892 3.108 26 H -0.289 1.289 27 H -0.291 1.291 28 H -0.281 1.281 29 H 0.087 0.913 30 H 0.074 0.926 31 H 0.111 0.889 32 H 0.117 0.883 33 H 0.062 0.938 34 H 0.061 0.939 35 H 0.071 0.929 36 H 0.063 0.937 37 H 0.072 0.928 38 H 0.061 0.939 39 H 0.424 0.576 40 H 0.068 0.932 41 H 0.057 0.943 42 H 0.061 0.939 43 H 0.051 0.949 44 H 0.052 0.948 45 H 0.044 0.956 46 H 0.046 0.954 47 H 0.053 0.947 48 H 0.018 0.982 49 H 0.084 0.916 50 H 0.253 0.747 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.484 8.023 -6.776 11.418 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.126 4.126 2 C -0.036 4.036 3 O -0.087 6.087 4 C -0.019 4.019 5 C -0.016 4.016 6 C -0.205 4.205 7 C -0.208 4.208 8 N -0.168 5.168 9 C -0.180 4.180 10 C 0.377 3.623 11 O -0.443 6.443 12 N -0.321 5.321 13 C 0.010 3.990 14 C 0.053 3.947 15 H 0.049 0.951 16 C -0.166 4.166 17 C -0.145 4.145 18 C -0.183 4.183 19 C 0.049 3.951 20 N -0.312 5.312 21 C -0.380 4.380 22 H 0.085 0.915 23 C -0.184 4.184 24 N -0.540 5.540 25 Si 0.722 3.278 26 H -0.216 1.216 27 H -0.217 1.217 28 H -0.207 1.207 29 H 0.105 0.895 30 H 0.093 0.907 31 H 0.130 0.870 32 H 0.135 0.865 33 H 0.081 0.919 34 H 0.080 0.920 35 H 0.090 0.910 36 H 0.082 0.918 37 H 0.091 0.909 38 H 0.080 0.920 39 H 0.264 0.736 40 H 0.086 0.914 41 H 0.075 0.925 42 H 0.079 0.921 43 H 0.070 0.930 44 H 0.071 0.929 45 H 0.063 0.937 46 H 0.064 0.936 47 H 0.071 0.929 48 H 0.036 0.964 49 H 0.103 0.897 50 H 0.063 0.937 Dipole moment (debyes) X Y Z Total from point charges -4.581 7.525 -6.701 11.069 hybrid contribution -0.149 1.039 0.979 1.435 sum -4.731 8.564 -5.722 11.334 Atomic orbital electron populations 1.20503 0.82858 1.04873 1.04341 1.23640 0.94927 0.83489 1.01495 1.84238 1.18003 1.36264 1.70149 1.26137 0.83875 0.90292 1.01564 1.19745 0.90272 0.94263 0.97316 1.21877 1.02825 0.99440 0.96369 1.21893 1.02786 0.99483 0.96652 1.70892 1.21605 1.08537 1.15732 1.21642 0.88650 0.95915 1.11759 1.16684 0.85529 0.82673 0.77380 1.90696 1.16500 1.83455 1.53687 1.45858 1.11177 1.05178 1.69895 1.21354 0.96863 0.80003 1.00821 1.20730 0.91088 0.91633 0.91269 0.95074 1.21935 0.97607 0.96574 1.00504 1.21360 0.97133 0.97513 0.98470 1.22198 0.99016 1.00591 0.96525 1.20749 0.88273 0.84797 1.01326 1.44063 1.31408 1.32971 1.22717 1.19129 0.92086 1.08393 1.18403 0.91456 1.24996 0.95524 0.97744 1.00137 1.69997 0.98639 1.44965 1.40393 0.86441 0.77608 0.80592 0.83138 1.21580 1.21706 1.20661 0.89461 0.90720 0.87016 0.86521 0.91913 0.92030 0.90964 0.91765 0.90901 0.92006 0.73633 0.91381 0.92474 0.92062 0.93048 0.92887 0.93745 0.93572 0.92852 0.96420 0.89744 0.93722 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.07 -0.90 9.88 36.00 0.36 -0.54 16 2 C 0.02 0.34 7.44 -35.08 -0.26 0.08 16 3 O -0.20 -3.14 10.73 6.50 0.07 -3.07 16 4 C 0.19 3.11 6.81 -13.08 -0.09 3.02 16 5 C 0.00 0.04 3.39 -91.77 -0.31 -0.27 16 6 C -0.15 -1.39 9.17 37.16 0.34 -1.05 16 7 C -0.15 -1.62 9.17 37.16 0.34 -1.28 16 8 N -0.44 -8.67 11.06 -7.65 -0.08 -8.75 16 9 C -0.06 -1.17 6.99 -83.02 -0.58 -1.75 16 10 C 0.59 12.45 7.81 -12.53 -0.10 12.35 16 11 O -0.56 -12.05 14.80 5.27 0.08 -11.98 16 12 N -0.67 -14.27 3.83 -61.38 -0.24 -14.51 16 13 C 0.13 2.64 4.43 -4.04 -0.02 2.62 16 14 C 0.16 3.20 3.01 -67.60 -0.20 3.00 16 15 H 0.03 0.65 8.14 -51.93 -0.42 0.23 16 16 C -0.13 -2.17 5.37 -26.61 -0.14 -2.31 16 17 C -0.11 -1.79 5.88 -26.69 -0.16 -1.95 16 18 C -0.14 -2.72 6.08 -26.61 -0.16 -2.88 16 19 C 0.17 4.02 5.27 -3.71 -0.02 4.00 16 20 N -0.59 -13.88 2.97 -164.77 -0.49 -14.37 16 21 C -0.25 -6.52 6.97 -15.06 -0.10 -6.63 16 22 H 0.07 1.82 5.86 -52.49 -0.31 1.52 16 23 C 0.02 0.42 4.97 -17.43 -0.09 0.34 16 24 N -0.90 -25.06 11.23 55.49 0.62 -24.43 16 25 Si 0.89 22.27 29.58 -169.99 -5.03 17.24 16 26 H -0.29 -7.21 7.11 56.52 0.40 -6.80 16 27 H -0.29 -7.28 7.11 56.52 0.40 -6.87 16 28 H -0.28 -7.18 7.11 56.52 0.40 -6.78 16 29 H 0.09 1.06 8.14 -51.93 -0.42 0.64 16 30 H 0.07 0.74 8.14 -51.93 -0.42 0.32 16 31 H 0.11 1.55 6.48 -51.93 -0.34 1.21 16 32 H 0.12 1.47 8.14 -51.93 -0.42 1.05 16 33 H 0.06 0.62 8.14 -51.93 -0.42 0.20 16 34 H 0.06 0.56 8.14 -51.93 -0.42 0.13 16 35 H 0.07 0.53 8.14 -51.93 -0.42 0.10 16 36 H 0.06 0.81 8.14 -51.93 -0.42 0.38 16 37 H 0.07 0.61 8.14 -51.93 -0.42 0.18 16 38 H 0.06 0.62 8.14 -51.94 -0.42 0.20 16 39 H 0.42 9.80 7.13 -40.82 -0.29 9.51 16 40 H 0.07 1.44 7.42 -51.93 -0.39 1.06 16 41 H 0.06 1.02 8.14 -51.93 -0.42 0.60 16 42 H 0.06 1.08 8.14 -51.93 -0.42 0.66 16 43 H 0.05 0.76 8.14 -51.93 -0.42 0.34 16 44 H 0.05 0.88 8.14 -51.93 -0.42 0.45 16 45 H 0.04 0.65 8.14 -51.93 -0.42 0.23 16 46 H 0.05 0.79 8.14 -51.93 -0.42 0.37 16 47 H 0.05 1.04 8.14 -51.93 -0.42 0.62 16 48 H 0.02 0.43 8.14 -51.93 -0.42 0.01 16 49 H 0.08 2.20 6.19 -51.93 -0.32 1.87 16 50 H 0.25 6.95 8.31 -40.82 -0.34 6.61 16 LS Contribution 396.12 15.07 5.97 5.97 Total: -1.00 -30.42 396.12 -8.68 -39.10 By element: Atomic # 1 Polarization: 16.42 SS G_CDS: -8.39 Total: 8.03 kcal Atomic # 6 Polarization: 7.96 SS G_CDS: -1.20 Total: 6.76 kcal Atomic # 7 Polarization: -61.87 SS G_CDS: -0.19 Total: -62.06 kcal Atomic # 8 Polarization: -15.19 SS G_CDS: 0.15 Total: -15.05 kcal Atomic # 14 Polarization: 22.27 SS G_CDS: -5.03 Total: 17.24 kcal Total LS contribution 5.97 Total: 5.97 kcal Total: -30.42 -8.68 -39.10 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001024437722.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 27.985 kcal (2) G-P(sol) polarization free energy of solvation -30.420 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -2.435 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.680 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.100 kcal (6) G-S(sol) free energy of system = (1) + (5) -11.115 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.26 seconds