Wall clock time and date at job start Tue Mar 31 2020 19:05:23 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50698 * 1 3 3 O 1.34260 * 126.52623 * 2 1 4 4 C 1.34049 * 108.22486 * 180.23413 * 3 2 1 5 5 C 1.50703 * 125.38024 * 179.73640 * 4 3 2 6 6 C 1.53000 * 109.46675 * 300.03755 * 5 4 3 7 7 C 1.52997 * 109.47001 * 60.03250 * 5 4 3 8 8 N 1.29937 * 109.24557 * 359.76718 * 4 3 2 9 9 C 1.36068 * 108.47787 * 0.02562 * 8 4 3 10 10 C 1.47417 * 126.45003 * 179.97438 * 9 8 4 11 11 O 1.21613 * 120.00006 * 180.02562 * 10 9 8 12 12 N 1.34771 * 119.99930 * 0.02562 * 10 9 8 13 13 C 1.46500 * 119.99906 * 179.97438 * 12 10 9 14 14 C 1.53006 * 109.47188 * 180.02562 * 13 12 10 15 15 H 1.08998 * 109.58527 * 299.92919 * 14 13 12 16 16 C 1.53195 * 109.58505 * 179.49771 * 14 13 12 17 17 C 1.53041 * 109.31117 * 185.57621 * 16 14 13 18 18 C 1.53044 * 109.53753 * 61.36600 * 17 16 14 19 19 C 1.53195 * 109.31262 * 298.63627 * 18 17 16 20 20 N 1.46920 * 109.58469 * 60.21239 * 14 13 12 21 21 C 1.36940 * 120.63207 * 353.41516 * 20 14 13 22 22 H 1.07996 * 119.99877 * 31.17636 * 21 20 14 23 23 C 1.38815 * 119.99977 * 211.16628 * 21 20 14 24 24 N 1.31622 * 119.99828 * 13.81157 * 23 21 20 25 25 Si 1.86801 * 119.99868 * 193.80594 * 23 21 20 26 26 H 1.48494 * 109.47007 * 90.00482 * 25 23 21 27 27 H 1.48508 * 109.46782 * 210.00426 * 25 23 21 28 28 H 1.48496 * 109.47156 * 330.00122 * 25 23 21 29 29 H 1.09004 * 109.46913 * 270.16290 * 1 2 3 30 30 H 1.09000 * 109.47187 * 30.15938 * 1 2 3 31 31 H 1.08998 * 109.47230 * 150.16132 * 1 2 3 32 32 H 1.08992 * 109.47548 * 180.02562 * 5 4 3 33 33 H 1.08997 * 109.47600 * 299.99926 * 6 5 4 34 34 H 1.09002 * 109.47169 * 59.99846 * 6 5 4 35 35 H 1.08998 * 109.47159 * 179.97438 * 6 5 4 36 36 H 1.09006 * 109.46648 * 60.00807 * 7 5 4 37 37 H 1.09000 * 109.46953 * 180.02562 * 7 5 4 38 38 H 1.08989 * 109.48052 * 300.00572 * 7 5 4 39 39 H 0.96993 * 120.00304 * 359.73076 * 12 10 9 40 40 H 1.09003 * 109.47327 * 300.00572 * 13 12 10 41 41 H 1.08998 * 109.47450 * 60.00279 * 13 12 10 42 42 H 1.08997 * 109.50121 * 305.53417 * 16 14 13 43 43 H 1.09006 * 109.49603 * 65.63087 * 16 14 13 44 44 H 1.09000 * 109.46106 * 301.35158 * 17 16 14 45 45 H 1.09001 * 109.45099 * 181.38189 * 17 16 14 46 46 H 1.08994 * 109.49777 * 178.68195 * 18 17 16 47 47 H 1.09006 * 109.49376 * 58.58743 * 18 17 16 48 48 H 1.08998 * 109.58557 * 294.84187 * 19 18 17 49 49 H 1.08996 * 109.70041 * 174.48811 * 19 18 17 50 50 H 0.96996 * 119.99831 * 179.97438 * 24 23 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 8 2.3061 1.0789 0.0000 4 6 3.5788 0.6580 -0.0052 5 6 4.7930 1.5505 -0.0127 6 6 4.7703 2.4319 -1.2631 7 6 4.7830 2.4356 1.2353 8 7 3.6002 -0.6412 -0.0034 9 6 2.3170 -1.0937 0.0025 10 6 1.8853 -2.5032 0.0057 11 8 0.7002 -2.7762 0.0106 12 7 2.8040 -3.4893 0.0033 13 6 2.3750 -4.8901 0.0071 14 6 3.6049 -5.8002 0.0039 15 1 4.2000 -5.6071 -0.8886 16 6 3.1593 -7.2658 0.0205 17 6 4.3886 -8.1670 0.1576 18 6 5.1008 -7.8638 1.4778 19 6 5.5684 -6.4049 1.4778 20 7 4.4143 -5.5385 1.2018 21 6 4.0989 -4.5068 2.0453 22 1 3.0692 -4.2053 2.1681 23 6 5.1027 -3.8487 2.7426 24 7 6.3623 -4.0204 2.4014 25 14 4.6659 -2.7195 4.1650 26 1 4.6429 -3.5003 5.4279 27 1 5.6799 -1.6395 4.2691 28 1 3.3276 -2.1207 3.9288 29 1 -0.3633 0.0029 1.0277 30 1 -0.3633 0.8885 -0.5163 31 1 -0.3633 -0.8914 -0.5113 32 1 5.6944 0.9378 -0.0162 33 1 4.7773 1.8015 -2.1522 34 1 3.8688 3.0447 -1.2593 35 1 5.6482 3.0779 -1.2683 36 1 4.7993 1.8075 2.1261 37 1 5.6611 3.0814 1.2297 38 1 3.8817 3.0483 1.2392 39 1 3.7491 -3.2716 -0.0045 40 1 1.7809 -5.0858 0.8998 41 1 1.7736 -5.0884 -0.8801 42 1 2.4896 -7.4330 0.8641 43 1 2.6394 -7.4986 -0.9089 44 1 5.0694 -7.9815 -0.6731 45 1 4.0763 -9.2113 0.1450 46 1 5.9628 -8.5221 1.5857 47 1 4.4129 -8.0253 2.3078 48 1 6.3245 -6.2636 0.7055 49 1 5.9892 -6.1539 2.4514 50 1 7.0637 -3.5603 2.8884 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001024437722.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 19:05:23 Heat of formation + Delta-G solvation = -30.881263 kcal Electronic energy + Delta-G solvation = -30729.445635 eV Core-core repulsion = 26757.485884 eV Total energy + Delta-G solvation = -3971.959752 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 335.200 amu Computer time = 1.19 seconds Orbital eigenvalues (eV) -44.52870 -40.70186 -39.28908 -36.79081 -35.87735 -35.69736 -34.90526 -32.96089 -32.36869 -31.68494 -28.67996 -28.15695 -27.54825 -26.50793 -24.73330 -23.82797 -23.47678 -22.43787 -21.88656 -20.96127 -20.61912 -18.93751 -18.11893 -18.02376 -17.35911 -17.09345 -16.83458 -16.13636 -16.12275 -15.74247 -15.40527 -15.33801 -14.95535 -14.79705 -14.61606 -14.40747 -14.34528 -14.08117 -13.81159 -13.62992 -13.51376 -13.43748 -13.09218 -12.89847 -12.86807 -12.64373 -12.60304 -12.45868 -12.34744 -12.17497 -12.07877 -12.03426 -11.83254 -11.77651 -11.53211 -11.26549 -11.10360 -10.93959 -10.53380 -10.04836 -9.70380 -8.55767 -7.84947 -5.30096 0.01622 0.96842 1.33052 1.35914 1.40205 1.41593 2.17439 2.34031 2.46062 2.81116 3.31284 3.54968 3.56544 3.74117 3.88059 3.97868 4.00858 4.15160 4.22099 4.23650 4.26616 4.40554 4.42004 4.54100 4.54642 4.63016 4.70666 4.71121 4.76721 4.84668 4.85966 4.86030 4.95990 4.99503 5.05518 5.11035 5.13840 5.22040 5.22839 5.27326 5.28520 5.37279 5.46258 5.56540 5.62503 5.73807 5.84080 6.38586 6.43803 6.69432 7.17920 7.20142 7.87859 8.40403 9.19921 Molecular weight = 335.20amu Principal moments of inertia in cm(-1) A = 0.011712 B = 0.004333 C = 0.003692 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2390.160751 B = 6460.340625 C = 7582.250590 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.067 4.067 2 C 0.036 3.964 3 O -0.190 6.190 4 C 0.197 3.803 5 C -0.001 4.001 6 C -0.139 4.139 7 C -0.146 4.146 8 N -0.484 5.484 9 C -0.104 4.104 10 C 0.589 3.411 11 O -0.572 6.572 12 N -0.680 5.680 13 C 0.138 3.862 14 C 0.158 3.842 15 H 0.028 0.972 16 C -0.120 4.120 17 C -0.102 4.102 18 C -0.134 4.134 19 C 0.179 3.821 20 N -0.601 5.601 21 C -0.232 4.232 22 H 0.056 0.944 23 C -0.027 4.027 24 N -0.920 5.920 25 Si 0.934 3.066 26 H -0.287 1.287 27 H -0.292 1.292 28 H -0.292 1.292 29 H 0.098 0.902 30 H 0.111 0.889 31 H 0.102 0.898 32 H 0.108 0.892 33 H 0.054 0.946 34 H 0.068 0.932 35 H 0.100 0.900 36 H 0.038 0.962 37 H 0.102 0.898 38 H 0.071 0.929 39 H 0.413 0.587 40 H 0.051 0.949 41 H 0.080 0.920 42 H 0.056 0.944 43 H 0.084 0.916 44 H 0.056 0.944 45 H 0.077 0.923 46 H 0.065 0.935 47 H 0.046 0.954 48 H -0.001 1.001 49 H 0.049 0.951 50 H 0.247 0.753 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.554 8.544 -7.832 12.853 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.123 4.123 2 C -0.021 4.021 3 O -0.077 6.077 4 C -0.012 4.012 5 C -0.021 4.021 6 C -0.197 4.197 7 C -0.203 4.203 8 N -0.212 5.212 9 C -0.223 4.223 10 C 0.375 3.625 11 O -0.455 6.455 12 N -0.328 5.328 13 C 0.014 3.986 14 C 0.052 3.948 15 H 0.046 0.954 16 C -0.159 4.159 17 C -0.140 4.140 18 C -0.174 4.174 19 C 0.053 3.947 20 N -0.325 5.325 21 C -0.363 4.363 22 H 0.073 0.927 23 C -0.224 4.224 24 N -0.566 5.566 25 Si 0.765 3.235 26 H -0.214 1.214 27 H -0.219 1.219 28 H -0.218 1.218 29 H 0.116 0.884 30 H 0.130 0.870 31 H 0.120 0.880 32 H 0.126 0.874 33 H 0.073 0.927 34 H 0.087 0.913 35 H 0.118 0.882 36 H 0.057 0.943 37 H 0.121 0.879 38 H 0.090 0.910 39 H 0.251 0.749 40 H 0.069 0.931 41 H 0.098 0.902 42 H 0.075 0.925 43 H 0.103 0.897 44 H 0.074 0.926 45 H 0.095 0.905 46 H 0.084 0.916 47 H 0.065 0.935 48 H 0.017 0.983 49 H 0.068 0.932 50 H 0.057 0.943 Dipole moment (debyes) X Y Z Total from point charges -5.677 8.016 -7.765 12.521 hybrid contribution 0.152 0.921 1.262 1.570 sum -5.526 8.937 -6.503 12.357 Atomic orbital electron populations 1.20664 0.80127 1.06180 1.05359 1.24266 0.96294 0.82787 0.98704 1.84274 1.17823 1.35699 1.69943 1.26996 0.84907 0.89985 0.99347 1.20054 0.88043 0.94283 0.99673 1.21854 1.04560 0.99051 0.94192 1.21894 1.04742 0.99151 0.94553 1.70839 1.22174 1.10403 1.17831 1.21639 0.89580 0.95990 1.15105 1.16921 0.85370 0.83358 0.76811 1.90665 1.16608 1.83910 1.54304 1.45920 1.10586 1.05916 1.70351 1.21388 0.96747 0.79464 1.00995 1.20911 0.90494 0.93955 0.89417 0.95446 1.21879 0.98014 0.93949 1.02056 1.21349 0.96586 0.99213 0.96847 1.22045 0.99851 0.97493 0.97961 1.20578 0.87860 0.87573 0.98665 1.44254 1.31828 1.32640 1.23818 1.19082 0.91244 1.08070 1.17864 0.92675 1.25401 0.95694 0.99267 1.01999 1.70095 0.98966 1.46187 1.41332 0.85782 0.76522 0.79481 0.81711 1.21371 1.21853 1.21799 0.88354 0.87026 0.87996 0.87431 0.92689 0.91274 0.88165 0.94254 0.87921 0.91045 0.74940 0.93082 0.90162 0.92519 0.89748 0.92551 0.90457 0.91647 0.93479 0.98325 0.93238 0.94335 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.07 -1.62 9.88 71.24 0.70 -0.91 16 2 C 0.04 1.20 7.44 25.19 0.19 1.38 16 3 O -0.19 -5.80 10.73 0.35 0.00 -5.80 16 4 C 0.20 6.44 6.81 88.39 0.60 7.04 16 5 C 0.00 -0.03 3.39 -11.54 -0.04 -0.07 16 6 C -0.14 -2.32 9.17 71.98 0.66 -1.66 16 7 C -0.15 -2.92 9.17 71.98 0.66 -2.26 16 8 N -0.48 -19.69 11.06 -293.03 -3.24 -22.93 16 9 C -0.10 -4.19 6.99 40.41 0.28 -3.91 16 10 C 0.59 25.35 7.81 86.66 0.68 26.03 16 11 O -0.57 -24.77 14.80 -4.07 -0.06 -24.83 16 12 N -0.68 -29.72 3.83 -466.37 -1.79 -31.50 16 13 C 0.14 5.44 4.43 86.38 0.38 5.82 16 14 C 0.16 6.27 3.01 44.98 0.14 6.41 16 15 H 0.03 1.14 8.14 -2.39 -0.02 1.12 16 16 C -0.12 -3.80 5.37 30.67 0.16 -3.64 16 17 C -0.10 -3.12 5.88 30.62 0.18 -2.94 16 18 C -0.13 -4.90 6.08 30.67 0.19 -4.71 16 19 C 0.18 8.39 5.27 86.36 0.46 8.84 16 20 N -0.60 -28.86 2.97 -675.22 -2.01 -30.87 16 21 C -0.23 -12.43 6.97 84.03 0.59 -11.85 16 22 H 0.06 3.09 5.86 -2.91 -0.02 3.07 16 23 C -0.03 -1.50 4.97 84.86 0.42 -1.08 16 24 N -0.92 -53.38 11.23 21.65 0.24 -53.14 16 25 Si 0.93 47.27 29.58 68.60 2.03 49.30 16 26 H -0.29 -14.25 7.11 99.48 0.71 -13.54 16 27 H -0.29 -14.70 7.11 99.48 0.71 -14.00 16 28 H -0.29 -15.11 7.11 99.48 0.71 -14.41 16 29 H 0.10 2.20 8.14 -2.38 -0.02 2.18 16 30 H 0.11 1.86 8.14 -2.39 -0.02 1.84 16 31 H 0.10 2.72 6.48 -2.39 -0.02 2.71 16 32 H 0.11 2.74 8.14 -2.39 -0.02 2.72 16 33 H 0.05 1.01 8.14 -2.39 -0.02 0.99 16 34 H 0.07 1.07 8.14 -2.39 -0.02 1.05 16 35 H 0.10 1.14 8.14 -2.39 -0.02 1.12 16 36 H 0.04 0.97 8.14 -2.38 -0.02 0.96 16 37 H 0.10 1.44 8.14 -2.39 -0.02 1.42 16 38 H 0.07 1.29 8.14 -2.39 -0.02 1.27 16 39 H 0.41 19.95 7.13 -92.71 -0.66 19.29 16 40 H 0.05 2.19 7.42 -2.39 -0.02 2.17 16 41 H 0.08 2.78 8.14 -2.39 -0.02 2.76 16 42 H 0.06 1.88 8.14 -2.39 -0.02 1.86 16 43 H 0.08 2.18 8.14 -2.38 -0.02 2.16 16 44 H 0.06 1.70 8.14 -2.39 -0.02 1.68 16 45 H 0.08 1.92 8.14 -2.39 -0.02 1.90 16 46 H 0.06 2.12 8.14 -2.39 -0.02 2.10 16 47 H 0.05 1.77 8.14 -2.38 -0.02 1.75 16 48 H 0.00 -0.07 8.14 -2.39 -0.02 -0.09 16 49 H 0.05 2.66 6.19 -2.39 -0.01 2.64 16 50 H 0.25 14.12 8.31 -92.71 -0.77 13.35 16 Total: -1.00 -68.90 396.12 1.70 -67.19 By element: Atomic # 1 Polarization: 29.80 SS G_CDS: 0.27 Total: 30.08 kcal Atomic # 6 Polarization: 16.25 SS G_CDS: 6.25 Total: 22.50 kcal Atomic # 7 Polarization: -131.65 SS G_CDS: -6.79 Total: -138.44 kcal Atomic # 8 Polarization: -30.57 SS G_CDS: -0.06 Total: -30.63 kcal Atomic # 14 Polarization: 47.27 SS G_CDS: 2.03 Total: 49.30 kcal Total: -68.90 1.70 -67.19 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001024437722.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 36.311 kcal (2) G-P(sol) polarization free energy of solvation -68.896 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -32.584 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.703 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -67.193 kcal (6) G-S(sol) free energy of system = (1) + (5) -30.881 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.19 seconds