Wall clock time and date at job start Tue Mar 31 2020 19:04:29 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50696 * 1 3 3 O 1.34255 * 126.52866 * 2 1 4 4 C 1.34047 * 108.22979 * 180.02562 * 3 2 1 5 5 C 1.50697 * 125.37871 * 179.97438 * 4 3 2 6 6 C 1.52997 * 109.47466 * 300.02668 * 5 4 3 7 7 C 1.52999 * 109.46961 * 60.03019 * 5 4 3 8 8 N 1.29940 * 109.24371 * 0.26179 * 4 3 2 9 9 C 1.36071 * 108.47288 * 359.58101 * 8 4 3 10 10 C 1.47417 * 126.44625 * 180.15908 * 9 8 4 11 11 O 1.21614 * 120.00022 * 180.29536 * 10 9 8 12 12 N 1.34781 * 120.00065 * 0.29959 * 10 9 8 13 13 C 1.46498 * 119.99788 * 179.97438 * 12 10 9 14 14 C 1.52997 * 109.47367 * 274.99949 * 13 12 10 15 15 C 1.53001 * 109.47296 * 180.02562 * 14 13 12 16 16 C 1.53000 * 109.47270 * 60.00223 * 15 14 13 17 17 N 1.46501 * 109.47364 * 179.97438 * 16 15 14 18 18 C 1.36929 * 120.00030 * 274.99990 * 17 16 15 19 19 H 1.08002 * 120.00376 * 0.02562 * 18 17 16 20 20 C 1.38812 * 119.99966 * 179.97438 * 18 17 16 21 21 N 1.31612 * 119.99970 * 0.02562 * 20 18 17 22 22 Si 1.86803 * 120.00166 * 180.02562 * 20 18 17 23 23 H 1.48504 * 109.47287 * 59.99815 * 22 20 18 24 24 H 1.48495 * 109.47426 * 180.02562 * 22 20 18 25 25 H 1.48500 * 109.46903 * 300.00271 * 22 20 18 26 26 C 1.52997 * 109.46779 * 300.00094 * 16 15 14 27 27 C 1.53000 * 109.47023 * 155.00280 * 13 12 10 28 28 H 1.09001 * 109.47005 * 359.97438 * 1 2 3 29 29 H 1.09008 * 109.47248 * 119.97590 * 1 2 3 30 30 H 1.09000 * 109.47664 * 239.97296 * 1 2 3 31 31 H 1.09002 * 109.47120 * 180.02562 * 5 4 3 32 32 H 1.09002 * 109.47153 * 59.99773 * 6 5 4 33 33 H 1.09001 * 109.46832 * 299.99964 * 6 5 4 34 34 H 1.09004 * 109.47261 * 179.97438 * 6 5 4 35 35 H 1.09002 * 109.46716 * 299.99650 * 7 5 4 36 36 H 1.09000 * 109.47486 * 59.99568 * 7 5 4 37 37 H 1.09001 * 109.47362 * 180.02562 * 7 5 4 38 38 H 0.96998 * 119.99965 * 0.02562 * 12 10 9 39 39 H 1.08998 * 109.47347 * 35.00140 * 13 12 10 40 40 H 1.09004 * 109.47723 * 300.00432 * 14 13 12 41 41 H 1.09008 * 109.47321 * 60.00403 * 14 13 12 42 42 H 1.08998 * 109.47172 * 300.00040 * 15 14 13 43 43 H 1.09003 * 109.46881 * 180.02562 * 15 14 13 44 44 H 1.09006 * 109.46830 * 59.99870 * 16 15 14 45 45 H 0.97001 * 119.99426 * 95.00143 * 17 16 15 46 46 H 0.96997 * 120.00359 * 180.02562 * 21 20 18 47 47 H 1.08997 * 109.47509 * 300.00037 * 26 16 15 48 48 H 1.09004 * 109.47034 * 179.97438 * 26 16 15 49 49 H 1.08996 * 109.46966 * 300.00109 * 27 13 12 50 50 H 1.08998 * 109.47173 * 59.99753 * 27 13 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 8 2.3061 1.0788 0.0000 4 6 3.5788 0.6579 -0.0006 5 6 4.7929 1.5506 -0.0013 6 6 4.7757 2.4341 -1.2503 7 6 4.7776 2.4334 1.2482 8 7 3.6002 -0.6413 -0.0065 9 6 2.3169 -1.0937 -0.0006 10 6 1.8852 -2.5032 -0.0009 11 8 0.7001 -2.7762 -0.0005 12 7 2.8040 -3.4894 -0.0015 13 6 2.3749 -4.8901 -0.0013 14 6 2.1062 -5.3410 1.4358 15 6 1.6588 -6.8042 1.4361 16 6 2.7595 -7.6743 0.8260 17 7 2.3313 -9.0753 0.8268 18 6 2.5198 -9.8482 1.9413 19 1 2.9839 -9.4249 2.8199 20 6 2.1136 -11.1756 1.9423 21 7 1.5477 -11.6913 0.8718 22 14 2.3702 -12.2298 3.4629 23 1 1.6410 -11.6307 4.6094 24 1 1.8546 -13.5990 3.2087 25 1 3.8195 -12.2979 3.7791 26 6 3.0281 -7.2234 -0.6111 27 6 3.4752 -5.7606 -0.6116 28 1 -0.3633 1.0277 0.0005 29 1 -0.3634 -0.5135 -0.8903 30 1 -0.3634 -0.5142 0.8897 31 1 5.6944 0.9378 -0.0021 32 1 3.8743 3.0468 -1.2495 33 1 4.7867 1.8050 -2.1404 34 1 5.6537 3.0800 -1.2506 35 1 3.8761 3.0462 1.2490 36 1 4.7898 1.8040 2.1380 37 1 5.6555 3.0794 1.2475 38 1 3.7492 -3.2716 -0.0014 39 1 1.4632 -4.9910 -0.5901 40 1 3.0179 -5.2402 2.0248 41 1 1.3223 -4.7209 1.8707 42 1 0.7472 -6.9054 0.8472 43 1 1.4669 -7.1252 2.4600 44 1 3.6711 -7.5730 1.4151 45 1 1.9142 -9.4554 0.0378 46 1 1.2635 -12.6187 0.8725 47 1 2.1166 -7.3246 -1.2001 48 1 3.8126 -7.8430 -1.0457 49 1 3.6666 -5.4394 -1.6354 50 1 4.3869 -5.6597 -0.0227 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001026493753.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 19:04:29 Heat of formation + Delta-G solvation = -34.470127 kcal Electronic energy + Delta-G solvation = -28786.898908 eV Core-core repulsion = 24814.783532 eV Total energy + Delta-G solvation = -3972.115376 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 335.200 amu Computer time = 1.39 seconds Orbital eigenvalues (eV) -43.77663 -39.86146 -37.91769 -36.26517 -35.06790 -34.81989 -32.94966 -32.27057 -30.63138 -30.35957 -28.05262 -27.77626 -26.93045 -24.39235 -23.47720 -22.83259 -22.29694 -21.59204 -20.63847 -20.17666 -19.37859 -17.88568 -17.26155 -16.96668 -16.40348 -16.21902 -15.44035 -15.15667 -14.86924 -14.79909 -14.28098 -13.94003 -13.86150 -13.73437 -13.66142 -13.52068 -13.23513 -12.97880 -12.87575 -12.76113 -12.51145 -12.18754 -11.99508 -11.89017 -11.76437 -11.60956 -11.51564 -11.40944 -11.08401 -10.98419 -10.77226 -10.72390 -10.64680 -10.20531 -10.10773 -10.03833 -9.71910 -9.55341 -9.14856 -8.86632 -8.79496 -6.90084 -5.71657 -2.99917 0.83031 1.73474 2.12196 3.02413 3.19076 3.45942 3.47039 3.51353 3.52359 4.19585 4.38929 4.44250 4.49035 4.63034 4.72331 4.85513 4.95101 5.04131 5.04186 5.09770 5.20499 5.21927 5.26121 5.33746 5.35630 5.55638 5.56252 5.60528 5.62913 5.66240 5.71269 5.73539 5.75803 5.80643 5.90926 5.93080 6.07481 6.29632 6.31368 6.35315 6.52921 6.61486 6.69062 6.77156 7.03657 7.14651 7.19824 7.54292 7.74285 8.13592 8.47298 9.58053 10.17073 10.51780 11.51077 Molecular weight = 335.20amu Principal moments of inertia in cm(-1) A = 0.023730 B = 0.001974 C = 0.001933 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1179.665551 B =14178.366980 C =14480.896084 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.067 4.067 2 C 0.038 3.962 3 O -0.194 6.194 4 C 0.198 3.802 5 C 0.003 3.997 6 C -0.151 4.151 7 C -0.151 4.151 8 N -0.457 5.457 9 C -0.076 4.076 10 C 0.601 3.399 11 O -0.533 6.533 12 N -0.707 5.707 13 C 0.145 3.855 14 C -0.124 4.124 15 C -0.131 4.131 16 C 0.177 3.823 17 N -0.725 5.725 18 C -0.236 4.236 19 H 0.069 0.931 20 C -0.015 4.015 21 N -0.934 5.934 22 Si 0.906 3.094 23 H -0.287 1.287 24 H -0.292 1.292 25 H -0.287 1.287 26 C -0.120 4.120 27 C -0.119 4.119 28 H 0.077 0.923 29 H 0.100 0.900 30 H 0.100 0.900 31 H 0.115 0.885 32 H 0.063 0.937 33 H 0.062 0.938 34 H 0.074 0.926 35 H 0.063 0.937 36 H 0.063 0.937 37 H 0.074 0.926 38 H 0.406 0.594 39 H 0.089 0.911 40 H 0.059 0.941 41 H 0.058 0.942 42 H 0.057 0.943 43 H 0.063 0.937 44 H 0.046 0.954 45 H 0.383 0.617 46 H 0.255 0.745 47 H 0.062 0.938 48 H 0.068 0.932 49 H 0.063 0.937 50 H 0.066 0.934 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 5.464 32.298 -4.348 33.044 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.124 4.124 2 C -0.018 4.018 3 O -0.081 6.081 4 C -0.011 4.011 5 C -0.016 4.016 6 C -0.208 4.208 7 C -0.209 4.209 8 N -0.186 5.186 9 C -0.196 4.196 10 C 0.386 3.614 11 O -0.410 6.410 12 N -0.356 5.356 13 C 0.042 3.958 14 C -0.163 4.163 15 C -0.172 4.172 16 C 0.067 3.933 17 N -0.365 5.365 18 C -0.367 4.367 19 H 0.087 0.913 20 C -0.211 4.211 21 N -0.582 5.582 22 Si 0.737 3.263 23 H -0.213 1.213 24 H -0.217 1.217 25 H -0.213 1.213 26 C -0.159 4.159 27 C -0.157 4.157 28 H 0.096 0.904 29 H 0.118 0.882 30 H 0.119 0.881 31 H 0.133 0.867 32 H 0.082 0.918 33 H 0.082 0.918 34 H 0.093 0.907 35 H 0.082 0.918 36 H 0.082 0.918 37 H 0.093 0.907 38 H 0.241 0.759 39 H 0.107 0.893 40 H 0.077 0.923 41 H 0.076 0.924 42 H 0.075 0.925 43 H 0.082 0.918 44 H 0.064 0.936 45 H 0.217 0.783 46 H 0.065 0.935 47 H 0.081 0.919 48 H 0.087 0.913 49 H 0.082 0.918 50 H 0.085 0.915 Dipole moment (debyes) X Y Z Total from point charges 5.201 31.602 -4.202 32.301 hybrid contribution -0.132 -0.273 0.659 0.725 sum 5.069 31.328 -3.543 31.933 Atomic orbital electron populations 1.20465 0.82415 1.03765 1.05726 1.23759 0.95143 0.83318 0.99604 1.84295 1.17925 1.36174 1.69706 1.26158 0.84073 0.90103 1.00781 1.19785 0.89816 0.94297 0.97711 1.21905 1.03233 0.99534 0.96171 1.21905 1.03230 0.99548 0.96184 1.70742 1.21661 1.08958 1.17229 1.21579 0.88804 0.95751 1.13418 1.16690 0.85664 0.82451 0.76624 1.90819 1.16196 1.83246 1.50773 1.45955 1.09931 1.06141 1.73607 1.21172 0.98727 0.78061 0.97841 1.21904 1.01175 0.97951 0.95254 1.22219 1.00533 0.92257 1.02214 1.20245 0.94819 0.85418 0.92840 1.42419 1.72559 1.05548 1.16022 1.19199 1.32715 0.92049 0.92787 0.91298 1.24736 1.01695 0.97208 0.97477 1.69647 1.46620 1.14070 1.27904 0.86285 0.77661 0.79751 0.82599 1.21334 1.21749 1.21342 1.21740 1.01569 0.93504 0.99041 1.21740 0.97772 0.95775 1.00443 0.90389 0.88161 0.88120 0.86664 0.91811 0.91843 0.90689 0.91808 0.91808 0.90687 0.75947 0.89278 0.92274 0.92363 0.92460 0.91799 0.93591 0.78309 0.93534 0.91949 0.91329 0.91837 0.91492 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.07 -0.56 9.13 36.00 0.33 -0.23 16 2 C 0.04 0.42 7.44 -35.08 -0.26 0.16 16 3 O -0.19 -1.95 10.73 6.52 0.07 -1.88 16 4 C 0.20 1.90 6.81 -13.08 -0.09 1.81 16 5 C 0.00 0.02 3.39 -91.78 -0.31 -0.29 16 6 C -0.15 -0.67 9.18 37.16 0.34 -0.33 16 7 C -0.15 -0.69 9.18 37.16 0.34 -0.35 16 8 N -0.46 -5.35 11.06 -7.65 -0.08 -5.44 16 9 C -0.08 -0.96 6.99 -83.02 -0.58 -1.54 16 10 C 0.60 8.54 7.78 -12.52 -0.10 8.44 16 11 O -0.53 -8.71 15.27 5.27 0.08 -8.63 16 12 N -0.71 -9.19 5.07 -54.88 -0.28 -9.47 16 13 C 0.15 2.06 2.46 -67.93 -0.17 1.89 16 14 C -0.12 -1.93 5.49 -26.73 -0.15 -2.07 16 15 C -0.13 -2.45 5.50 -26.73 -0.15 -2.59 16 16 C 0.18 3.52 2.77 -67.93 -0.19 3.33 16 17 N -0.73 -18.36 5.12 -53.43 -0.27 -18.64 16 18 C -0.24 -6.63 9.93 -15.06 -0.15 -6.78 16 19 H 0.07 1.88 7.83 -52.49 -0.41 1.47 16 20 C -0.02 -0.45 5.50 -17.43 -0.10 -0.54 16 21 N -0.93 -28.54 13.06 55.49 0.72 -27.82 16 22 Si 0.91 22.70 29.55 -169.99 -5.02 17.68 16 23 H -0.29 -7.08 7.11 56.52 0.40 -6.68 16 24 H -0.29 -7.36 7.11 56.52 0.40 -6.96 16 25 H -0.29 -7.05 7.11 56.52 0.40 -6.65 16 26 C -0.12 -1.97 5.39 -26.76 -0.14 -2.11 16 27 C -0.12 -1.58 5.39 -26.75 -0.14 -1.72 16 28 H 0.08 0.46 8.14 -51.93 -0.42 0.03 16 29 H 0.10 0.85 8.08 -51.92 -0.42 0.43 16 30 H 0.10 0.87 8.07 -51.93 -0.42 0.45 16 31 H 0.12 0.59 8.14 -51.93 -0.42 0.17 16 32 H 0.06 0.30 8.14 -51.93 -0.42 -0.12 16 33 H 0.06 0.32 8.14 -51.93 -0.42 -0.10 16 34 H 0.07 0.20 8.14 -51.93 -0.42 -0.22 16 35 H 0.06 0.31 8.14 -51.93 -0.42 -0.12 16 36 H 0.06 0.34 8.14 -51.93 -0.42 -0.08 16 37 H 0.07 0.21 8.14 -51.93 -0.42 -0.21 16 38 H 0.41 4.67 8.33 -40.82 -0.34 4.33 16 39 H 0.09 1.41 7.58 -51.93 -0.39 1.01 16 40 H 0.06 0.88 8.14 -51.93 -0.42 0.46 16 41 H 0.06 0.95 8.14 -51.92 -0.42 0.52 16 42 H 0.06 1.11 8.14 -51.93 -0.42 0.69 16 43 H 0.06 1.30 8.14 -51.93 -0.42 0.87 16 44 H 0.05 0.94 8.08 -51.93 -0.42 0.52 16 45 H 0.38 10.32 7.80 -40.82 -0.32 10.00 16 46 H 0.25 7.56 8.31 -40.82 -0.34 7.23 16 47 H 0.06 1.04 8.14 -51.93 -0.42 0.62 16 48 H 0.07 1.15 8.14 -51.93 -0.42 0.72 16 49 H 0.06 0.76 8.14 -51.93 -0.42 0.33 16 50 H 0.07 0.83 8.14 -51.93 -0.42 0.41 16 LS Contribution 407.84 15.07 6.15 6.15 Total: -1.00 -33.09 407.84 -8.77 -41.86 By element: Atomic # 1 Polarization: 17.74 SS G_CDS: -8.62 Total: 9.12 kcal Atomic # 6 Polarization: -1.42 SS G_CDS: -1.51 Total: -2.93 kcal Atomic # 7 Polarization: -61.45 SS G_CDS: 0.09 Total: -61.37 kcal Atomic # 8 Polarization: -10.66 SS G_CDS: 0.15 Total: -10.51 kcal Atomic # 14 Polarization: 22.70 SS G_CDS: -5.02 Total: 17.68 kcal Total LS contribution 6.15 Total: 6.15 kcal Total: -33.09 -8.77 -41.86 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001026493753.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 7.392 kcal (2) G-P(sol) polarization free energy of solvation -33.091 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -25.699 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.771 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.862 kcal (6) G-S(sol) free energy of system = (1) + (5) -34.470 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.40 seconds