Wall clock time and date at job start Tue Mar 31 2020 19:04:27 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50696 * 1 3 3 O 1.34255 * 126.52866 * 2 1 4 4 C 1.34047 * 108.22979 * 180.02562 * 3 2 1 5 5 C 1.50697 * 125.37871 * 179.97438 * 4 3 2 6 6 C 1.52997 * 109.47466 * 300.02668 * 5 4 3 7 7 C 1.52999 * 109.46961 * 60.03019 * 5 4 3 8 8 N 1.29940 * 109.24371 * 0.26179 * 4 3 2 9 9 C 1.36071 * 108.47288 * 359.58101 * 8 4 3 10 10 C 1.47417 * 126.44625 * 180.15908 * 9 8 4 11 11 O 1.21614 * 120.00022 * 180.29536 * 10 9 8 12 12 N 1.34781 * 120.00065 * 0.29959 * 10 9 8 13 13 C 1.46498 * 119.99788 * 179.97438 * 12 10 9 14 14 C 1.52997 * 109.47367 * 274.99949 * 13 12 10 15 15 C 1.53001 * 109.47296 * 180.02562 * 14 13 12 16 16 C 1.53000 * 109.47270 * 60.00223 * 15 14 13 17 17 N 1.46501 * 109.47364 * 179.97438 * 16 15 14 18 18 C 1.36929 * 120.00030 * 274.99990 * 17 16 15 19 19 H 1.08002 * 120.00376 * 0.02562 * 18 17 16 20 20 C 1.38812 * 119.99966 * 179.97438 * 18 17 16 21 21 N 1.31612 * 119.99970 * 0.02562 * 20 18 17 22 22 Si 1.86803 * 120.00166 * 180.02562 * 20 18 17 23 23 H 1.48504 * 109.47287 * 59.99815 * 22 20 18 24 24 H 1.48495 * 109.47426 * 180.02562 * 22 20 18 25 25 H 1.48500 * 109.46903 * 300.00271 * 22 20 18 26 26 C 1.52997 * 109.46779 * 300.00094 * 16 15 14 27 27 C 1.53000 * 109.47023 * 155.00280 * 13 12 10 28 28 H 1.09001 * 109.47005 * 359.97438 * 1 2 3 29 29 H 1.09008 * 109.47248 * 119.97590 * 1 2 3 30 30 H 1.09000 * 109.47664 * 239.97296 * 1 2 3 31 31 H 1.09002 * 109.47120 * 180.02562 * 5 4 3 32 32 H 1.09002 * 109.47153 * 59.99773 * 6 5 4 33 33 H 1.09001 * 109.46832 * 299.99964 * 6 5 4 34 34 H 1.09004 * 109.47261 * 179.97438 * 6 5 4 35 35 H 1.09002 * 109.46716 * 299.99650 * 7 5 4 36 36 H 1.09000 * 109.47486 * 59.99568 * 7 5 4 37 37 H 1.09001 * 109.47362 * 180.02562 * 7 5 4 38 38 H 0.96998 * 119.99965 * 0.02562 * 12 10 9 39 39 H 1.08998 * 109.47347 * 35.00140 * 13 12 10 40 40 H 1.09004 * 109.47723 * 300.00432 * 14 13 12 41 41 H 1.09008 * 109.47321 * 60.00403 * 14 13 12 42 42 H 1.08998 * 109.47172 * 300.00040 * 15 14 13 43 43 H 1.09003 * 109.46881 * 180.02562 * 15 14 13 44 44 H 1.09006 * 109.46830 * 59.99870 * 16 15 14 45 45 H 0.97001 * 119.99426 * 95.00143 * 17 16 15 46 46 H 0.96997 * 120.00359 * 180.02562 * 21 20 18 47 47 H 1.08997 * 109.47509 * 300.00037 * 26 16 15 48 48 H 1.09004 * 109.47034 * 179.97438 * 26 16 15 49 49 H 1.08996 * 109.46966 * 300.00109 * 27 13 12 50 50 H 1.08998 * 109.47173 * 59.99753 * 27 13 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 8 2.3061 1.0788 0.0000 4 6 3.5788 0.6579 -0.0006 5 6 4.7929 1.5506 -0.0013 6 6 4.7757 2.4341 -1.2503 7 6 4.7776 2.4334 1.2482 8 7 3.6002 -0.6413 -0.0065 9 6 2.3169 -1.0937 -0.0006 10 6 1.8852 -2.5032 -0.0009 11 8 0.7001 -2.7762 -0.0005 12 7 2.8040 -3.4894 -0.0015 13 6 2.3749 -4.8901 -0.0013 14 6 2.1062 -5.3410 1.4358 15 6 1.6588 -6.8042 1.4361 16 6 2.7595 -7.6743 0.8260 17 7 2.3313 -9.0753 0.8268 18 6 2.5198 -9.8482 1.9413 19 1 2.9839 -9.4249 2.8199 20 6 2.1136 -11.1756 1.9423 21 7 1.5477 -11.6913 0.8718 22 14 2.3702 -12.2298 3.4629 23 1 1.6410 -11.6307 4.6094 24 1 1.8546 -13.5990 3.2087 25 1 3.8195 -12.2979 3.7791 26 6 3.0281 -7.2234 -0.6111 27 6 3.4752 -5.7606 -0.6116 28 1 -0.3633 1.0277 0.0005 29 1 -0.3634 -0.5135 -0.8903 30 1 -0.3634 -0.5142 0.8897 31 1 5.6944 0.9378 -0.0021 32 1 3.8743 3.0468 -1.2495 33 1 4.7867 1.8050 -2.1404 34 1 5.6537 3.0800 -1.2506 35 1 3.8761 3.0462 1.2490 36 1 4.7898 1.8040 2.1380 37 1 5.6555 3.0794 1.2475 38 1 3.7492 -3.2716 -0.0014 39 1 1.4632 -4.9910 -0.5901 40 1 3.0179 -5.2402 2.0248 41 1 1.3223 -4.7209 1.8707 42 1 0.7472 -6.9054 0.8472 43 1 1.4669 -7.1252 2.4600 44 1 3.6711 -7.5730 1.4151 45 1 1.9142 -9.4554 0.0378 46 1 1.2635 -12.6187 0.8725 47 1 2.1166 -7.3246 -1.2001 48 1 3.8126 -7.8430 -1.0457 49 1 3.6666 -5.4394 -1.6354 50 1 4.3869 -5.6597 -0.0227 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001026493753.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 19:04:27 Heat of formation + Delta-G solvation = -57.565157 kcal Electronic energy + Delta-G solvation = -28787.900384 eV Core-core repulsion = 24814.783532 eV Total energy + Delta-G solvation = -3973.116852 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 335.200 amu Computer time = 1.06 seconds Orbital eigenvalues (eV) -44.57621 -41.02649 -39.28576 -36.78097 -36.39172 -35.88478 -34.61209 -32.99446 -32.44339 -31.71843 -29.37926 -28.10644 -28.01954 -25.78670 -24.85744 -23.71906 -23.54942 -22.64518 -21.81422 -21.26148 -20.65703 -19.19046 -18.66483 -18.06269 -17.39512 -17.11624 -16.83061 -16.15834 -16.06350 -15.83204 -15.44348 -15.34996 -15.10240 -14.94930 -14.65372 -14.55939 -14.33309 -14.00264 -13.80888 -13.49964 -13.46726 -13.17499 -13.10539 -13.05450 -12.80745 -12.62053 -12.51054 -12.45820 -12.32181 -12.18729 -12.13628 -12.05459 -11.98709 -11.91007 -11.67327 -11.49266 -11.24915 -11.17507 -10.83413 -10.18618 -9.80948 -8.98886 -7.92527 -5.20661 -0.03011 0.89392 1.37775 1.46747 1.49814 1.55769 2.00108 2.16369 2.57119 2.72746 3.39763 3.49505 3.60116 3.74398 3.83530 3.88794 3.90897 4.05173 4.12790 4.22485 4.27557 4.34877 4.37361 4.40620 4.50819 4.53608 4.57678 4.63701 4.75803 4.78649 4.84181 4.86704 4.90287 4.95172 4.97885 5.03360 5.07738 5.10699 5.12590 5.23276 5.26418 5.30289 5.31401 5.42303 5.50555 5.54293 5.63103 6.26250 6.29939 6.56214 7.07260 7.35458 8.12949 8.35909 9.30846 Molecular weight = 335.20amu Principal moments of inertia in cm(-1) A = 0.023730 B = 0.001974 C = 0.001933 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1179.665551 B =14178.366980 C =14480.896084 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.066 4.066 2 C 0.041 3.959 3 O -0.192 6.192 4 C 0.204 3.796 5 C 0.002 3.998 6 C -0.147 4.147 7 C -0.147 4.147 8 N -0.477 5.477 9 C -0.103 4.103 10 C 0.598 3.402 11 O -0.561 6.561 12 N -0.697 5.697 13 C 0.153 3.847 14 C -0.112 4.112 15 C -0.121 4.121 16 C 0.172 3.828 17 N -0.738 5.738 18 C -0.237 4.237 19 H 0.074 0.926 20 C -0.079 4.079 21 N -0.970 5.970 22 Si 0.971 3.029 23 H -0.280 1.280 24 H -0.296 1.296 25 H -0.277 1.277 26 C -0.111 4.111 27 C -0.106 4.106 28 H 0.105 0.895 29 H 0.098 0.902 30 H 0.096 0.904 31 H 0.124 0.876 32 H 0.061 0.939 33 H 0.054 0.946 34 H 0.098 0.902 35 H 0.061 0.939 36 H 0.053 0.947 37 H 0.098 0.902 38 H 0.415 0.585 39 H 0.073 0.927 40 H 0.071 0.929 41 H 0.050 0.950 42 H 0.043 0.957 43 H 0.042 0.958 44 H 0.046 0.954 45 H 0.372 0.628 46 H 0.250 0.750 47 H 0.056 0.944 48 H 0.068 0.932 49 H 0.086 0.914 50 H 0.083 0.917 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 7.151 34.847 -4.093 35.808 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.122 4.122 2 C -0.016 4.016 3 O -0.080 6.080 4 C -0.005 4.005 5 C -0.017 4.017 6 C -0.204 4.204 7 C -0.205 4.205 8 N -0.206 5.206 9 C -0.222 4.222 10 C 0.385 3.615 11 O -0.440 6.440 12 N -0.347 5.347 13 C 0.049 3.951 14 C -0.151 4.151 15 C -0.162 4.162 16 C 0.064 3.936 17 N -0.377 5.377 18 C -0.369 4.369 19 H 0.092 0.908 20 C -0.271 4.271 21 N -0.621 5.621 22 Si 0.800 3.200 23 H -0.207 1.207 24 H -0.222 1.222 25 H -0.203 1.203 26 C -0.150 4.150 27 C -0.144 4.144 28 H 0.124 0.876 29 H 0.116 0.884 30 H 0.114 0.886 31 H 0.142 0.858 32 H 0.080 0.920 33 H 0.073 0.927 34 H 0.117 0.883 35 H 0.080 0.920 36 H 0.072 0.928 37 H 0.117 0.883 38 H 0.252 0.748 39 H 0.091 0.909 40 H 0.090 0.910 41 H 0.069 0.931 42 H 0.062 0.938 43 H 0.061 0.939 44 H 0.064 0.936 45 H 0.204 0.796 46 H 0.059 0.941 47 H 0.075 0.925 48 H 0.087 0.913 49 H 0.105 0.895 50 H 0.102 0.898 Dipole moment (debyes) X Y Z Total from point charges 6.932 34.200 -3.934 35.117 hybrid contribution -0.637 -0.936 0.576 1.270 sum 6.295 33.264 -3.358 34.020 Atomic orbital electron populations 1.20546 0.80924 1.05463 1.05305 1.24159 0.96090 0.83105 0.98211 1.84329 1.18174 1.35801 1.69651 1.27039 0.84722 0.90082 0.98686 1.20076 0.88316 0.94291 0.99027 1.21901 1.04277 0.99341 0.94929 1.21903 1.04284 0.99360 0.94957 1.70712 1.21222 1.10048 1.18612 1.21455 0.89837 0.95287 1.15619 1.16923 0.85358 0.83258 0.75966 1.90799 1.17302 1.83823 1.52113 1.45786 1.10332 1.05329 1.73254 1.20953 0.98649 0.79016 0.96461 1.21762 1.01319 0.95367 0.96636 1.22012 0.99583 0.94194 1.00373 1.20484 0.94727 0.83055 0.95368 1.42644 1.72644 1.07545 1.14913 1.19579 1.31336 0.92448 0.93543 0.90803 1.25553 1.02440 0.98690 1.00425 1.69809 1.48374 1.14007 1.29927 0.85241 0.77900 0.77589 0.79231 1.20679 1.22236 1.20271 1.21615 1.01445 0.95686 0.96261 1.21637 0.97676 0.92978 1.02141 0.87645 0.88390 0.88567 0.85839 0.92026 0.92667 0.88347 0.92020 0.92780 0.88332 0.74816 0.90863 0.91044 0.93086 0.93824 0.93949 0.93615 0.79649 0.94132 0.92510 0.91349 0.89533 0.89811 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.07 -1.04 9.13 71.23 0.65 -0.39 16 2 C 0.04 0.87 7.44 25.19 0.19 1.06 16 3 O -0.19 -3.60 10.73 0.43 0.00 -3.60 16 4 C 0.20 3.62 6.81 88.39 0.60 4.22 16 5 C 0.00 0.02 3.39 -11.54 -0.04 -0.02 16 6 C -0.15 -0.95 9.18 71.98 0.66 -0.29 16 7 C -0.15 -1.00 9.18 71.98 0.66 -0.34 16 8 N -0.48 -10.66 11.06 -293.04 -3.24 -13.90 16 9 C -0.10 -2.55 6.99 40.41 0.28 -2.27 16 10 C 0.60 16.78 7.78 86.66 0.67 17.45 16 11 O -0.56 -18.44 15.27 -4.08 -0.06 -18.51 16 12 N -0.70 -17.31 5.07 -445.80 -2.26 -19.57 16 13 C 0.15 4.19 2.46 44.99 0.11 4.30 16 14 C -0.11 -3.41 5.49 30.59 0.17 -3.25 16 15 C -0.12 -4.56 5.50 30.59 0.17 -4.39 16 16 C 0.17 6.84 2.77 44.99 0.12 6.96 16 17 N -0.74 -37.99 5.12 -322.94 -1.65 -39.65 16 18 C -0.24 -13.41 9.93 84.03 0.83 -12.58 16 19 H 0.07 4.02 7.83 -2.91 -0.02 3.99 16 20 C -0.08 -4.63 5.50 84.86 0.47 -4.17 16 21 N -0.97 -60.51 13.06 21.65 0.28 -60.23 16 22 Si 0.97 47.06 29.55 68.60 2.03 49.08 16 23 H -0.28 -13.17 7.11 99.48 0.71 -12.47 16 24 H -0.30 -14.45 7.11 99.48 0.71 -13.74 16 25 H -0.28 -12.83 7.11 99.48 0.71 -12.12 16 26 C -0.11 -3.57 5.39 30.58 0.16 -3.40 16 27 C -0.11 -2.59 5.39 30.58 0.16 -2.42 16 28 H 0.10 1.03 8.14 -2.39 -0.02 1.01 16 29 H 0.10 1.61 8.08 -2.38 -0.02 1.59 16 30 H 0.10 1.63 8.07 -2.39 -0.02 1.61 16 31 H 0.12 0.99 8.14 -2.39 -0.02 0.97 16 32 H 0.06 0.44 8.14 -2.39 -0.02 0.42 16 33 H 0.05 0.46 8.14 -2.39 -0.02 0.44 16 34 H 0.10 0.20 8.14 -2.38 -0.02 0.18 16 35 H 0.06 0.46 8.14 -2.39 -0.02 0.44 16 36 H 0.05 0.48 8.14 -2.39 -0.02 0.46 16 37 H 0.10 0.23 8.14 -2.39 -0.02 0.21 16 38 H 0.42 8.82 8.33 -92.71 -0.77 8.05 16 39 H 0.07 2.29 7.58 -2.39 -0.02 2.27 16 40 H 0.07 2.02 8.14 -2.38 -0.02 2.00 16 41 H 0.05 1.65 8.14 -2.38 -0.02 1.63 16 42 H 0.04 1.74 8.14 -2.39 -0.02 1.72 16 43 H 0.04 1.75 8.14 -2.39 -0.02 1.73 16 44 H 0.05 1.83 8.08 -2.38 -0.02 1.81 16 45 H 0.37 20.57 7.80 -92.71 -0.72 19.84 16 46 H 0.25 15.16 8.31 -92.71 -0.77 14.39 16 47 H 0.06 1.89 8.14 -2.39 -0.02 1.87 16 48 H 0.07 2.21 8.14 -2.38 -0.02 2.19 16 49 H 0.09 1.80 8.14 -2.39 -0.02 1.78 16 50 H 0.08 1.82 8.14 -2.39 -0.02 1.80 16 Total: -1.00 -72.23 407.84 0.42 -71.80 By element: Atomic # 1 Polarization: 34.65 SS G_CDS: -0.55 Total: 34.10 kcal Atomic # 6 Polarization: -5.41 SS G_CDS: 5.88 Total: 0.47 kcal Atomic # 7 Polarization: -126.48 SS G_CDS: -6.87 Total: -133.35 kcal Atomic # 8 Polarization: -22.04 SS G_CDS: -0.06 Total: -22.10 kcal Atomic # 14 Polarization: 47.06 SS G_CDS: 2.03 Total: 49.08 kcal Total: -72.23 0.42 -71.80 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001026493753.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 14.239 kcal (2) G-P(sol) polarization free energy of solvation -72.226 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -57.987 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.422 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -71.804 kcal (6) G-S(sol) free energy of system = (1) + (5) -57.565 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.06 seconds