Wall clock time and date at job start Tue Mar 31 2020 20:02:49 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50703 * 1 3 3 N 1.33686 * 126.27387 * 2 1 4 4 C 1.30618 * 108.99663 * 180.02562 * 3 2 1 5 5 C 1.50701 * 125.42079 * 179.97438 * 4 3 2 6 6 C 1.53005 * 109.46931 * 90.02157 * 5 4 3 7 7 C 1.53001 * 109.47150 * 65.00137 * 6 5 4 8 8 C 1.53002 * 109.46966 * 184.99594 * 6 5 4 9 9 O 1.33663 * 109.15468 * 359.72593 * 4 3 2 10 10 C 1.35343 * 107.68201 * 0.43773 * 9 4 3 11 11 C 1.46726 * 126.64285 * 179.83613 * 10 9 4 12 12 O 1.21689 * 119.99990 * 179.68603 * 11 10 9 13 13 N 1.34773 * 119.99852 * 359.69153 * 11 10 9 14 14 C 1.46506 * 119.99969 * 180.02562 * 13 11 10 15 15 C 1.52998 * 109.47237 * 179.72043 * 14 13 11 16 16 H 1.08999 * 110.64036 * 305.70206 * 15 14 13 17 17 C 1.55151 * 110.72034 * 182.55580 * 15 14 13 18 18 C 1.54909 * 101.58428 * 206.13622 * 17 15 14 19 19 N 1.47428 * 104.83069 * 37.00960 * 18 17 15 20 20 C 1.36934 * 125.64750 * 155.90752 * 19 18 17 21 21 H 1.08001 * 120.00251 * 179.97438 * 20 19 18 22 22 C 1.38813 * 120.00402 * 359.97305 * 20 19 18 23 23 N 1.31621 * 119.99740 * 0.02562 * 22 20 19 24 24 Si 1.86798 * 120.00598 * 180.02562 * 22 20 19 25 25 H 1.48495 * 109.46994 * 59.99661 * 24 22 20 26 26 H 1.48493 * 109.47223 * 180.02562 * 24 22 20 27 27 H 1.48499 * 109.46866 * 300.00355 * 24 22 20 28 28 C 1.47316 * 108.73690 * 335.71849 * 19 18 17 29 29 H 1.09001 * 109.46952 * 269.95355 * 1 2 3 30 30 H 1.08992 * 109.47476 * 29.95754 * 1 2 3 31 31 H 1.09004 * 109.46985 * 149.95881 * 1 2 3 32 32 H 1.09002 * 109.47009 * 210.02078 * 5 4 3 33 33 H 1.08999 * 109.47149 * 330.01990 * 5 4 3 34 34 H 1.08996 * 109.47380 * 304.99398 * 6 5 4 35 35 H 1.08995 * 109.47208 * 59.99772 * 7 6 5 36 36 H 1.09004 * 109.47044 * 179.97438 * 7 6 5 37 37 H 1.08996 * 109.46662 * 299.99884 * 7 6 5 38 38 H 1.09003 * 109.46836 * 60.00231 * 8 6 5 39 39 H 1.08994 * 109.47251 * 179.97438 * 8 6 5 40 40 H 1.08995 * 109.47413 * 300.00241 * 8 6 5 41 41 H 0.97005 * 120.00161 * 359.72001 * 13 11 10 42 42 H 1.09001 * 109.46512 * 299.72412 * 14 13 11 43 43 H 1.08998 * 109.47174 * 59.71534 * 14 13 11 44 44 H 1.09007 * 111.00590 * 324.21091 * 17 15 14 45 45 H 1.09004 * 111.00358 * 88.02218 * 17 15 14 46 46 H 1.08995 * 110.36781 * 155.84634 * 18 17 15 47 47 H 1.08999 * 110.36352 * 278.06478 * 18 17 15 48 48 H 0.96998 * 120.00421 * 179.97438 * 23 22 20 49 49 H 1.09006 * 110.06450 * 241.87455 * 28 19 18 50 50 H 1.09004 * 109.85111 * 120.60792 * 28 19 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 7 2.2980 1.0778 0.0000 4 6 3.5452 0.6898 -0.0006 5 6 4.7440 1.6031 -0.0013 6 6 5.1507 1.9120 1.4410 7 6 5.6215 0.6266 2.1245 8 6 6.2875 2.9360 1.4422 9 8 3.5890 -0.6461 0.0051 10 6 2.3137 -1.0992 -0.0005 11 6 1.8827 -2.5017 -0.0007 12 8 0.6966 -2.7738 -0.0004 13 7 2.8005 -3.4887 -0.0012 14 6 2.3702 -4.8891 -0.0019 15 6 3.5992 -5.8003 -0.0094 16 1 4.2585 -5.5494 -0.8402 17 6 3.1764 -7.2917 -0.0751 18 6 4.3875 -7.9881 0.5944 19 7 4.8010 -7.0718 1.6728 20 6 5.4901 -7.4271 2.8014 21 1 5.7475 -6.6778 3.5354 22 6 5.8580 -8.7504 3.0024 23 7 5.5448 -9.6636 2.1077 24 14 6.7975 -9.2353 4.5424 25 1 5.9878 -8.9020 5.7417 26 1 7.0688 -10.6951 4.5177 27 1 8.0833 -8.4941 4.5917 28 6 4.3542 -5.7096 1.3336 29 1 -0.3633 -0.0008 1.0277 30 1 -0.3634 0.8903 -0.5131 31 1 -0.3633 -0.8897 -0.5145 32 1 5.5720 1.1154 -0.5158 33 1 4.4933 2.5313 -0.5148 34 1 4.2953 2.3182 1.9807 35 1 6.4769 0.2205 1.5848 36 1 5.9117 0.8468 3.1519 37 1 4.8116 -0.1029 2.1237 38 1 5.9521 3.8517 0.9552 39 1 6.5769 3.1564 2.4696 40 1 7.1429 2.5298 0.9025 41 1 3.7460 -3.2718 -0.0055 42 1 1.7763 -5.0871 0.8904 43 1 1.7681 -5.0837 -0.8895 44 1 2.2629 -7.4643 0.4940 45 1 3.0586 -7.6192 -1.1080 46 1 4.0899 -8.9514 1.0084 47 1 5.1955 -8.1185 -0.1254 48 1 5.8021 -10.5883 2.2479 49 1 5.2148 -5.0485 1.2310 50 1 3.6867 -5.3350 2.1096 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001028854262.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 20:02:49 Heat of formation + Delta-G solvation = -11.745116 kcal Electronic energy + Delta-G solvation = -29033.935218 eV Core-core repulsion = 25062.805272 eV Total energy + Delta-G solvation = -3971.129946 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 335.200 amu Computer time = 1.14 seconds Orbital eigenvalues (eV) -43.68818 -39.67392 -37.69675 -36.96209 -35.67118 -34.65733 -32.59940 -32.06340 -29.95703 -28.89148 -28.55085 -27.54855 -27.26267 -25.47660 -23.72821 -22.53933 -21.88440 -20.87421 -20.50188 -20.07794 -19.75232 -18.17771 -17.22627 -16.85817 -16.43014 -16.11494 -15.52672 -15.11054 -14.87108 -14.82055 -14.57693 -14.29420 -14.07372 -13.64175 -13.45225 -13.36978 -12.93115 -12.88729 -12.71437 -12.54461 -12.39606 -12.34669 -11.81893 -11.76059 -11.72151 -11.54090 -11.39155 -11.16558 -11.09965 -11.05444 -10.98234 -10.80868 -10.53590 -10.25973 -10.13053 -10.03361 -9.81749 -9.55237 -9.27137 -8.88325 -8.67024 -6.86305 -5.67561 -3.09355 0.61308 2.13840 2.17315 2.96500 3.06676 3.38956 3.43124 3.44512 3.57791 4.32729 4.38125 4.44465 4.46738 4.57515 4.68615 4.97416 5.03346 5.08274 5.19191 5.19924 5.27408 5.30487 5.33286 5.35993 5.47789 5.49338 5.49726 5.53563 5.64114 5.65758 5.67548 5.77593 5.82817 5.87007 5.95443 5.98745 6.04203 6.10572 6.28032 6.31261 6.51402 6.54529 6.66894 6.86003 7.22082 7.45179 7.48432 7.59542 7.83068 7.95151 8.34001 9.19857 9.80485 10.45304 11.36431 Molecular weight = 335.20amu Principal moments of inertia in cm(-1) A = 0.011281 B = 0.002670 C = 0.002257 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2481.537457 B =10485.173624 C =12400.657225 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.080 4.080 2 C 0.080 3.920 3 N -0.488 5.488 4 C 0.226 3.774 5 C -0.025 4.025 6 C -0.094 4.094 7 C -0.154 4.154 8 C -0.146 4.146 9 O -0.185 6.185 10 C -0.118 4.118 11 C 0.607 3.393 12 O -0.518 6.518 13 N -0.711 5.711 14 C 0.131 3.869 15 C -0.115 4.115 16 H 0.077 0.923 17 C -0.134 4.134 18 C 0.152 3.848 19 N -0.604 5.604 20 C -0.224 4.224 21 H 0.076 0.924 22 C -0.011 4.011 23 N -0.923 5.923 24 Si 0.915 3.085 25 H -0.285 1.285 26 H -0.289 1.289 27 H -0.286 1.286 28 C 0.141 3.859 29 H 0.081 0.919 30 H 0.076 0.924 31 H 0.095 0.905 32 H 0.098 0.902 33 H 0.110 0.890 34 H 0.079 0.921 35 H 0.062 0.938 36 H 0.061 0.939 37 H 0.054 0.946 38 H 0.058 0.942 39 H 0.061 0.939 40 H 0.059 0.941 41 H 0.406 0.594 42 H 0.075 0.925 43 H 0.071 0.929 44 H 0.064 0.936 45 H 0.061 0.939 46 H 0.108 0.892 47 H 0.012 0.988 48 H 0.253 0.747 49 H 0.018 0.982 50 H 0.025 0.975 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.344 22.989 -6.587 24.147 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.137 4.137 2 C -0.045 4.045 3 N -0.218 5.218 4 C 0.020 3.980 5 C -0.063 4.063 6 C -0.113 4.113 7 C -0.212 4.212 8 C -0.203 4.203 9 O -0.071 6.071 10 C -0.173 4.173 11 C 0.392 3.608 12 O -0.396 6.396 13 N -0.361 5.361 14 C 0.009 3.991 15 C -0.135 4.135 16 H 0.095 0.905 17 C -0.174 4.174 18 C 0.027 3.973 19 N -0.330 5.330 20 C -0.352 4.352 21 H 0.094 0.906 22 C -0.206 4.206 23 N -0.571 5.571 24 Si 0.745 3.255 25 H -0.211 1.211 26 H -0.215 1.215 27 H -0.212 1.212 28 C 0.015 3.985 29 H 0.100 0.900 30 H 0.094 0.906 31 H 0.114 0.886 32 H 0.116 0.884 33 H 0.128 0.872 34 H 0.097 0.903 35 H 0.081 0.919 36 H 0.080 0.920 37 H 0.073 0.927 38 H 0.077 0.923 39 H 0.081 0.919 40 H 0.079 0.921 41 H 0.241 0.759 42 H 0.093 0.907 43 H 0.089 0.911 44 H 0.083 0.917 45 H 0.080 0.920 46 H 0.125 0.875 47 H 0.030 0.970 48 H 0.064 0.936 49 H 0.036 0.964 50 H 0.043 0.957 Dipole moment (debyes) X Y Z Total from point charges -4.214 23.137 -6.478 24.394 hybrid contribution 1.337 -0.795 0.757 1.730 sum -2.876 22.342 -5.720 23.242 Atomic orbital electron populations 1.20387 0.85292 1.04296 1.03753 1.22060 0.98331 0.86396 0.97685 1.70337 1.00354 1.31088 1.20030 1.26467 0.95530 0.79365 0.96620 1.20413 0.90238 0.96126 0.99516 1.21165 0.99400 0.97064 0.93665 1.21939 1.01718 0.96572 1.00946 1.21815 0.97700 0.98243 1.02556 1.84473 1.29649 1.23699 1.69313 1.22967 0.81334 0.96363 1.16606 1.16309 0.85851 0.81288 0.77391 1.90854 1.15701 1.81890 1.51169 1.46010 1.09898 1.06736 1.73428 1.21588 0.97218 0.77764 1.02567 1.22458 0.95522 0.96210 0.99280 0.90508 1.23009 1.01119 0.92990 1.00245 1.21931 0.90668 0.96077 0.88601 1.44562 1.65648 1.01540 1.21286 1.19031 1.27318 0.92940 0.95952 0.90612 1.24786 1.01357 0.95828 0.98663 1.69780 1.51312 1.01333 1.34714 0.86146 0.79606 0.77338 0.82378 1.21130 1.21527 1.21227 1.21388 0.95225 0.89230 0.92705 0.89998 0.90561 0.88593 0.88357 0.87225 0.90253 0.91939 0.91998 0.92701 0.92251 0.91949 0.92144 0.75919 0.90694 0.91103 0.91738 0.92030 0.87469 0.97008 0.93643 0.96378 0.95737 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.08 -0.86 9.87 36.01 0.36 -0.51 16 2 C 0.08 1.03 7.16 -82.47 -0.59 0.44 16 3 N -0.49 -6.04 11.26 -7.07 -0.08 -6.12 16 4 C 0.23 2.42 6.74 -12.79 -0.09 2.33 16 5 C -0.02 -0.17 5.32 -27.88 -0.15 -0.32 16 6 C -0.09 -0.62 2.91 -90.62 -0.26 -0.89 16 7 C -0.15 -1.23 9.01 37.16 0.33 -0.90 16 8 C -0.15 -0.72 9.19 37.16 0.34 -0.38 16 9 O -0.18 -2.23 9.95 4.43 0.04 -2.18 16 10 C -0.12 -1.58 7.18 -36.84 -0.26 -1.84 16 11 C 0.61 8.75 7.79 -12.83 -0.10 8.65 16 12 O -0.52 -8.47 14.79 5.20 0.08 -8.39 16 13 N -0.71 -9.58 5.43 -61.60 -0.33 -9.92 16 14 C 0.13 1.90 5.00 -4.04 -0.02 1.88 16 15 C -0.12 -1.89 2.98 -88.79 -0.26 -2.15 16 16 H 0.08 1.18 8.14 -51.93 -0.42 0.76 16 17 C -0.13 -2.44 6.54 -24.59 -0.16 -2.60 16 18 C 0.15 3.63 5.89 -2.53 -0.01 3.61 16 19 N -0.60 -15.35 3.40 -169.83 -0.58 -15.93 16 20 C -0.22 -6.24 10.28 -15.06 -0.15 -6.39 16 21 H 0.08 2.04 7.83 -52.49 -0.41 1.63 16 22 C -0.01 -0.31 5.49 -17.43 -0.10 -0.40 16 23 N -0.92 -26.78 10.09 55.49 0.56 -26.22 16 24 Si 0.91 22.01 29.55 -169.99 -5.02 16.98 16 25 H -0.28 -6.76 7.11 56.52 0.40 -6.36 16 26 H -0.29 -7.00 7.11 56.52 0.40 -6.59 16 27 H -0.29 -6.77 7.11 56.52 0.40 -6.37 16 28 C 0.14 2.84 6.67 -2.90 -0.02 2.82 16 29 H 0.08 0.82 8.14 -51.93 -0.42 0.40 16 30 H 0.08 0.70 8.14 -51.93 -0.42 0.27 16 31 H 0.10 1.10 6.47 -51.93 -0.34 0.77 16 32 H 0.10 0.53 8.14 -51.93 -0.42 0.11 16 33 H 0.11 0.59 8.14 -51.93 -0.42 0.17 16 34 H 0.08 0.60 8.14 -51.93 -0.42 0.18 16 35 H 0.06 0.46 8.14 -51.93 -0.42 0.04 16 36 H 0.06 0.46 8.14 -51.93 -0.42 0.04 16 37 H 0.05 0.54 6.88 -51.93 -0.36 0.19 16 38 H 0.06 0.25 8.14 -51.93 -0.42 -0.18 16 39 H 0.06 0.31 8.14 -51.93 -0.42 -0.12 16 40 H 0.06 0.27 8.14 -51.93 -0.42 -0.15 16 41 H 0.41 4.99 8.20 -40.82 -0.33 4.65 16 42 H 0.07 1.18 8.00 -51.93 -0.42 0.76 16 43 H 0.07 0.97 8.14 -51.93 -0.42 0.55 16 44 H 0.06 1.16 8.05 -51.92 -0.42 0.74 16 45 H 0.06 0.97 8.14 -51.93 -0.42 0.55 16 46 H 0.11 2.89 5.87 -51.93 -0.31 2.59 16 47 H 0.01 0.30 8.14 -51.93 -0.42 -0.12 16 48 H 0.25 7.13 8.31 -40.82 -0.34 6.79 16 49 H 0.02 0.36 8.14 -51.93 -0.42 -0.06 16 50 H 0.02 0.51 7.73 -51.93 -0.40 0.11 16 LS Contribution 403.27 15.07 6.08 6.08 Total: -1.00 -32.14 403.27 -8.86 -41.01 By element: Atomic # 1 Polarization: 9.79 SS G_CDS: -8.46 Total: 1.33 kcal Atomic # 6 Polarization: 4.51 SS G_CDS: -1.15 Total: 3.35 kcal Atomic # 7 Polarization: -57.75 SS G_CDS: -0.43 Total: -58.18 kcal Atomic # 8 Polarization: -10.69 SS G_CDS: 0.12 Total: -10.57 kcal Atomic # 14 Polarization: 22.01 SS G_CDS: -5.02 Total: 16.98 kcal Total LS contribution 6.08 Total: 6.08 kcal Total: -32.14 -8.86 -41.01 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001028854262.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 29.262 kcal (2) G-P(sol) polarization free energy of solvation -32.144 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -2.881 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.864 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.007 kcal (6) G-S(sol) free energy of system = (1) + (5) -11.745 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.15 seconds