Wall clock time and date at job start Tue Mar 31 2020 20:02:48 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50703 * 1 3 3 N 1.33686 * 126.27387 * 2 1 4 4 C 1.30618 * 108.99663 * 180.02562 * 3 2 1 5 5 C 1.50701 * 125.42079 * 179.97438 * 4 3 2 6 6 C 1.53005 * 109.46931 * 90.02157 * 5 4 3 7 7 C 1.53001 * 109.47150 * 65.00137 * 6 5 4 8 8 C 1.53002 * 109.46966 * 184.99594 * 6 5 4 9 9 O 1.33663 * 109.15468 * 359.72593 * 4 3 2 10 10 C 1.35343 * 107.68201 * 0.43773 * 9 4 3 11 11 C 1.46726 * 126.64285 * 179.83613 * 10 9 4 12 12 O 1.21689 * 119.99990 * 179.68603 * 11 10 9 13 13 N 1.34773 * 119.99852 * 359.69153 * 11 10 9 14 14 C 1.46506 * 119.99969 * 180.02562 * 13 11 10 15 15 C 1.52998 * 109.47237 * 179.72043 * 14 13 11 16 16 H 1.08999 * 110.64036 * 305.70206 * 15 14 13 17 17 C 1.55151 * 110.72034 * 182.55580 * 15 14 13 18 18 C 1.54909 * 101.58428 * 206.13622 * 17 15 14 19 19 N 1.47428 * 104.83069 * 37.00960 * 18 17 15 20 20 C 1.36934 * 125.64750 * 155.90752 * 19 18 17 21 21 H 1.08001 * 120.00251 * 179.97438 * 20 19 18 22 22 C 1.38813 * 120.00402 * 359.97305 * 20 19 18 23 23 N 1.31621 * 119.99740 * 0.02562 * 22 20 19 24 24 Si 1.86798 * 120.00598 * 180.02562 * 22 20 19 25 25 H 1.48495 * 109.46994 * 59.99661 * 24 22 20 26 26 H 1.48493 * 109.47223 * 180.02562 * 24 22 20 27 27 H 1.48499 * 109.46866 * 300.00355 * 24 22 20 28 28 C 1.47316 * 108.73690 * 335.71849 * 19 18 17 29 29 H 1.09001 * 109.46952 * 269.95355 * 1 2 3 30 30 H 1.08992 * 109.47476 * 29.95754 * 1 2 3 31 31 H 1.09004 * 109.46985 * 149.95881 * 1 2 3 32 32 H 1.09002 * 109.47009 * 210.02078 * 5 4 3 33 33 H 1.08999 * 109.47149 * 330.01990 * 5 4 3 34 34 H 1.08996 * 109.47380 * 304.99398 * 6 5 4 35 35 H 1.08995 * 109.47208 * 59.99772 * 7 6 5 36 36 H 1.09004 * 109.47044 * 179.97438 * 7 6 5 37 37 H 1.08996 * 109.46662 * 299.99884 * 7 6 5 38 38 H 1.09003 * 109.46836 * 60.00231 * 8 6 5 39 39 H 1.08994 * 109.47251 * 179.97438 * 8 6 5 40 40 H 1.08995 * 109.47413 * 300.00241 * 8 6 5 41 41 H 0.97005 * 120.00161 * 359.72001 * 13 11 10 42 42 H 1.09001 * 109.46512 * 299.72412 * 14 13 11 43 43 H 1.08998 * 109.47174 * 59.71534 * 14 13 11 44 44 H 1.09007 * 111.00590 * 324.21091 * 17 15 14 45 45 H 1.09004 * 111.00358 * 88.02218 * 17 15 14 46 46 H 1.08995 * 110.36781 * 155.84634 * 18 17 15 47 47 H 1.08999 * 110.36352 * 278.06478 * 18 17 15 48 48 H 0.96998 * 120.00421 * 179.97438 * 23 22 20 49 49 H 1.09006 * 110.06450 * 241.87455 * 28 19 18 50 50 H 1.09004 * 109.85111 * 120.60792 * 28 19 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 7 2.2980 1.0778 0.0000 4 6 3.5452 0.6898 -0.0006 5 6 4.7440 1.6031 -0.0013 6 6 5.1507 1.9120 1.4410 7 6 5.6215 0.6266 2.1245 8 6 6.2875 2.9360 1.4422 9 8 3.5890 -0.6461 0.0051 10 6 2.3137 -1.0992 -0.0005 11 6 1.8827 -2.5017 -0.0007 12 8 0.6966 -2.7738 -0.0004 13 7 2.8005 -3.4887 -0.0012 14 6 2.3702 -4.8891 -0.0019 15 6 3.5992 -5.8003 -0.0094 16 1 4.2585 -5.5494 -0.8402 17 6 3.1764 -7.2917 -0.0751 18 6 4.3875 -7.9881 0.5944 19 7 4.8010 -7.0718 1.6728 20 6 5.4901 -7.4271 2.8014 21 1 5.7475 -6.6778 3.5354 22 6 5.8580 -8.7504 3.0024 23 7 5.5448 -9.6636 2.1077 24 14 6.7975 -9.2353 4.5424 25 1 5.9878 -8.9020 5.7417 26 1 7.0688 -10.6951 4.5177 27 1 8.0833 -8.4941 4.5917 28 6 4.3542 -5.7096 1.3336 29 1 -0.3633 -0.0008 1.0277 30 1 -0.3634 0.8903 -0.5131 31 1 -0.3633 -0.8897 -0.5145 32 1 5.5720 1.1154 -0.5158 33 1 4.4933 2.5313 -0.5148 34 1 4.2953 2.3182 1.9807 35 1 6.4769 0.2205 1.5848 36 1 5.9117 0.8468 3.1519 37 1 4.8116 -0.1029 2.1237 38 1 5.9521 3.8517 0.9552 39 1 6.5769 3.1564 2.4696 40 1 7.1429 2.5298 0.9025 41 1 3.7460 -3.2718 -0.0055 42 1 1.7763 -5.0871 0.8904 43 1 1.7681 -5.0837 -0.8895 44 1 2.2629 -7.4643 0.4940 45 1 3.0586 -7.6192 -1.1080 46 1 4.0899 -8.9514 1.0084 47 1 5.1955 -8.1185 -0.1254 48 1 5.8021 -10.5883 2.2479 49 1 5.2148 -5.0485 1.2310 50 1 3.6867 -5.3350 2.1096 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001028854262.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 20:02:48 Heat of formation + Delta-G solvation = -33.347245 kcal Electronic energy + Delta-G solvation = -29034.871956 eV Core-core repulsion = 25062.805272 eV Total energy + Delta-G solvation = -3972.066685 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 335.200 amu Computer time = 1.12 seconds Orbital eigenvalues (eV) -44.59601 -40.83455 -39.27084 -37.53283 -36.68295 -35.97231 -34.36086 -32.96802 -31.69414 -30.13096 -29.55481 -28.42458 -28.03637 -27.15128 -25.27151 -23.44230 -22.88368 -22.18929 -21.61242 -21.16467 -21.08231 -19.34321 -18.76897 -18.14448 -17.44925 -17.13652 -16.87679 -16.61013 -15.94594 -15.86317 -15.57998 -15.55323 -15.12957 -14.91093 -14.37220 -14.30243 -14.27369 -14.18084 -13.63383 -13.56132 -13.40566 -13.22043 -13.16807 -13.13053 -12.85018 -12.83985 -12.66436 -12.42587 -12.07496 -12.05981 -11.94514 -11.93252 -11.85317 -11.83868 -11.65244 -11.62308 -11.43280 -11.20482 -10.74384 -10.38408 -9.85598 -8.89649 -7.78521 -5.22781 -0.34567 1.22631 1.26474 1.45495 1.48460 1.54973 1.89637 2.02320 2.48627 2.77325 3.30655 3.52190 3.57939 3.63292 3.78174 3.81170 3.91357 3.93850 4.02216 4.06621 4.31675 4.34094 4.41897 4.52988 4.62323 4.64295 4.65683 4.67663 4.69650 4.74692 4.79474 4.85224 4.88071 4.89674 4.97122 5.00611 5.06936 5.11899 5.17183 5.23048 5.27935 5.35709 5.37393 5.44676 5.45785 5.65596 5.81973 6.18768 6.31302 6.49261 6.86342 7.10331 7.77693 8.41096 9.23145 Molecular weight = 335.20amu Principal moments of inertia in cm(-1) A = 0.011281 B = 0.002670 C = 0.002257 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2481.537457 B =10485.173624 C =12400.657225 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.078 4.078 2 C 0.076 3.924 3 N -0.507 5.507 4 C 0.237 3.763 5 C -0.026 4.026 6 C -0.088 4.088 7 C -0.155 4.155 8 C -0.142 4.142 9 O -0.188 6.188 10 C -0.141 4.141 11 C 0.609 3.391 12 O -0.542 6.542 13 N -0.706 5.706 14 C 0.143 3.857 15 C -0.095 4.095 16 H 0.095 0.905 17 C -0.120 4.120 18 C 0.151 3.849 19 N -0.628 5.628 20 C -0.242 4.242 21 H 0.078 0.922 22 C -0.066 4.066 23 N -0.948 5.948 24 Si 0.979 3.021 25 H -0.278 1.278 26 H -0.292 1.292 27 H -0.278 1.278 28 C 0.137 3.863 29 H 0.087 0.913 30 H 0.092 0.908 31 H 0.087 0.913 32 H 0.118 0.882 33 H 0.129 0.871 34 H 0.068 0.932 35 H 0.068 0.932 36 H 0.062 0.938 37 H 0.030 0.970 38 H 0.070 0.930 39 H 0.061 0.939 40 H 0.068 0.932 41 H 0.412 0.588 42 H 0.062 0.938 43 H 0.087 0.913 44 H 0.065 0.935 45 H 0.092 0.908 46 H 0.072 0.928 47 H -0.010 1.010 48 H 0.248 0.752 49 H 0.025 0.975 50 H 0.020 0.980 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.850 25.145 -7.181 26.305 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.135 4.135 2 C -0.048 4.048 3 N -0.237 5.237 4 C 0.032 3.968 5 C -0.064 4.064 6 C -0.107 4.107 7 C -0.213 4.213 8 C -0.199 4.199 9 O -0.075 6.075 10 C -0.196 4.196 11 C 0.395 3.605 12 O -0.422 6.422 13 N -0.356 5.356 14 C 0.020 3.980 15 C -0.114 4.114 16 H 0.114 0.886 17 C -0.159 4.159 18 C 0.027 3.973 19 N -0.354 5.354 20 C -0.371 4.371 21 H 0.096 0.904 22 C -0.259 4.259 23 N -0.598 5.598 24 Si 0.807 3.193 25 H -0.204 1.204 26 H -0.218 1.218 27 H -0.204 1.204 28 C 0.012 3.988 29 H 0.106 0.894 30 H 0.111 0.889 31 H 0.106 0.894 32 H 0.136 0.864 33 H 0.148 0.852 34 H 0.086 0.914 35 H 0.087 0.913 36 H 0.081 0.919 37 H 0.049 0.951 38 H 0.089 0.911 39 H 0.080 0.920 40 H 0.087 0.913 41 H 0.248 0.752 42 H 0.081 0.919 43 H 0.105 0.895 44 H 0.084 0.916 45 H 0.110 0.890 46 H 0.090 0.910 47 H 0.008 0.992 48 H 0.057 0.943 49 H 0.043 0.957 50 H 0.038 0.962 Dipole moment (debyes) X Y Z Total from point charges -3.718 25.330 -7.077 26.562 hybrid contribution 1.227 -1.373 0.962 2.078 sum -2.491 23.957 -6.115 24.851 Atomic orbital electron populations 1.20418 0.84251 1.04648 1.04184 1.22439 0.99261 0.86500 0.96605 1.70385 1.01016 1.30990 1.21322 1.27366 0.96268 0.79198 0.93989 1.20735 0.89334 0.96282 1.00001 1.21112 0.99690 0.96770 0.93155 1.21957 1.01079 0.96754 1.01487 1.21786 0.97114 0.98066 1.02907 1.84472 1.29071 1.24403 1.69595 1.22754 0.82017 0.96000 1.18806 1.16371 0.85545 0.81757 0.76844 1.90836 1.16574 1.82413 1.52355 1.45893 1.10199 1.06235 1.73226 1.21379 0.95998 0.77828 1.02790 1.22294 0.96050 0.95490 0.97592 0.88637 1.22846 0.98348 0.93406 1.01337 1.21741 0.92165 0.95372 0.88072 1.44884 1.65586 1.03920 1.21043 1.19403 1.27413 0.93287 0.96999 0.90438 1.25622 1.02692 0.95903 1.01661 1.70039 1.52283 1.01188 1.36286 0.85140 0.78518 0.76599 0.79015 1.20420 1.21820 1.20373 1.21551 0.95657 0.86919 0.94680 0.89440 0.88937 0.89428 0.86393 0.85250 0.91368 0.91257 0.91867 0.95098 0.91086 0.91971 0.91301 0.75161 0.91928 0.89478 0.91601 0.88972 0.91014 0.99187 0.94273 0.95714 0.96158 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.08 -1.62 9.87 71.24 0.70 -0.92 16 2 C 0.08 1.91 7.16 41.84 0.30 2.21 16 3 N -0.51 -11.94 11.26 -291.06 -3.28 -15.22 16 4 C 0.24 4.73 6.74 88.29 0.60 5.32 16 5 C -0.03 -0.29 5.32 29.85 0.16 -0.13 16 6 C -0.09 -1.01 2.91 -10.79 -0.03 -1.04 16 7 C -0.16 -2.30 9.01 71.98 0.65 -1.66 16 8 C -0.14 -1.02 9.19 71.98 0.66 -0.36 16 9 O -0.19 -4.34 9.95 -7.07 -0.07 -4.41 16 10 C -0.14 -3.68 7.18 24.05 0.17 -3.51 16 11 C 0.61 17.10 7.79 86.46 0.67 17.77 16 12 O -0.54 -17.42 14.79 -4.31 -0.06 -17.48 16 13 N -0.71 -18.06 5.43 -467.03 -2.53 -20.59 16 14 C 0.14 3.87 5.00 86.38 0.43 4.30 16 15 C -0.10 -2.94 2.98 -9.61 -0.03 -2.97 16 16 H 0.10 2.66 8.14 -2.39 -0.02 2.64 16 17 C -0.12 -4.21 6.54 31.98 0.21 -4.00 16 18 C 0.15 7.34 5.89 86.85 0.51 7.86 16 19 N -0.63 -32.26 3.40 -691.21 -2.35 -34.61 16 20 C -0.24 -13.66 10.28 84.03 0.86 -12.80 16 21 H 0.08 4.21 7.83 -2.91 -0.02 4.18 16 22 C -0.07 -3.77 5.49 84.86 0.47 -3.30 16 23 N -0.95 -56.52 10.09 21.65 0.22 -56.30 16 24 Si 0.98 45.72 29.55 68.60 2.03 47.75 16 25 H -0.28 -12.58 7.11 99.48 0.71 -11.87 16 26 H -0.29 -13.65 7.11 99.48 0.71 -12.94 16 27 H -0.28 -12.50 7.11 99.48 0.71 -11.79 16 28 C 0.14 5.46 6.67 86.68 0.58 6.03 16 29 H 0.09 1.70 8.14 -2.39 -0.02 1.68 16 30 H 0.09 1.57 8.14 -2.39 -0.02 1.55 16 31 H 0.09 1.98 6.47 -2.38 -0.02 1.97 16 32 H 0.12 0.90 8.14 -2.39 -0.02 0.88 16 33 H 0.13 0.99 8.14 -2.39 -0.02 0.97 16 34 H 0.07 0.94 8.14 -2.39 -0.02 0.92 16 35 H 0.07 0.91 8.14 -2.39 -0.02 0.90 16 36 H 0.06 0.90 8.14 -2.39 -0.02 0.88 16 37 H 0.03 0.60 6.88 -2.39 -0.02 0.58 16 38 H 0.07 0.37 8.14 -2.39 -0.02 0.35 16 39 H 0.06 0.47 8.14 -2.39 -0.02 0.46 16 40 H 0.07 0.41 8.14 -2.39 -0.02 0.39 16 41 H 0.41 9.51 8.20 -92.70 -0.76 8.75 16 42 H 0.06 1.89 8.00 -2.39 -0.02 1.87 16 43 H 0.09 2.15 8.14 -2.39 -0.02 2.13 16 44 H 0.07 2.30 8.05 -2.38 -0.02 2.28 16 45 H 0.09 2.69 8.14 -2.39 -0.02 2.67 16 46 H 0.07 4.01 5.87 -2.39 -0.01 3.99 16 47 H -0.01 -0.51 8.14 -2.39 -0.02 -0.53 16 48 H 0.25 14.34 8.31 -92.71 -0.77 13.57 16 49 H 0.02 0.96 8.14 -2.38 -0.02 0.94 16 50 H 0.02 0.83 7.73 -2.39 -0.02 0.81 16 Total: -1.00 -70.87 403.27 1.04 -69.84 By element: Atomic # 1 Polarization: 18.06 SS G_CDS: 0.17 Total: 18.23 kcal Atomic # 6 Polarization: 5.90 SS G_CDS: 6.91 Total: 12.81 kcal Atomic # 7 Polarization: -118.77 SS G_CDS: -7.94 Total: -126.72 kcal Atomic # 8 Polarization: -21.77 SS G_CDS: -0.13 Total: -21.90 kcal Atomic # 14 Polarization: 45.72 SS G_CDS: 2.03 Total: 47.75 kcal Total: -70.87 1.04 -69.84 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001028854262.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 36.488 kcal (2) G-P(sol) polarization free energy of solvation -70.871 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -34.383 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.035 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -69.836 kcal (6) G-S(sol) free energy of system = (1) + (5) -33.347 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.12 seconds