Wall clock time and date at job start Tue Mar 31 2020 19:03:54 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50698 * 1 3 3 O 1.34265 * 126.52512 * 2 1 4 4 C 1.34042 * 108.22771 * 180.26146 * 3 2 1 5 5 C 1.50700 * 125.37875 * 179.76694 * 4 3 2 6 6 C 1.52999 * 109.47166 * 299.95810 * 5 4 3 7 7 C 1.52996 * 109.47073 * 59.96129 * 5 4 3 8 8 N 1.29935 * 109.24388 * 359.73437 * 4 3 2 9 9 C 1.36064 * 108.47843 * 359.97438 * 8 4 3 10 10 C 1.47427 * 126.45000 * 179.97438 * 9 8 4 11 11 O 1.21606 * 120.00011 * 174.19618 * 10 9 8 12 12 N 1.34774 * 119.99619 * 354.20170 * 10 9 8 13 13 C 1.46922 * 120.63472 * 353.86882 * 12 10 9 14 14 C 1.53193 * 108.77562 * 126.37180 * 13 12 10 15 15 C 1.53045 * 109.31098 * 54.63476 * 14 13 12 16 16 H 1.09003 * 109.45300 * 178.63096 * 15 14 13 17 17 N 1.46493 * 109.45970 * 58.65958 * 15 14 13 18 18 C 1.36938 * 120.00410 * 84.99655 * 17 15 14 19 19 H 1.08001 * 119.99576 * 359.97438 * 18 17 15 20 20 C 1.38811 * 120.00003 * 179.97438 * 18 17 15 21 21 N 1.31620 * 119.99943 * 179.97438 * 20 18 17 22 22 Si 1.86800 * 120.00058 * 0.02562 * 20 18 17 23 23 H 1.48497 * 109.46867 * 269.99651 * 22 20 18 24 24 H 1.48501 * 109.47356 * 29.99743 * 22 20 18 25 25 H 1.48500 * 109.47162 * 149.99776 * 22 20 18 26 26 C 1.53040 * 109.53624 * 298.63398 * 15 14 13 27 27 H 1.08993 * 109.50016 * 301.41308 * 26 15 14 28 28 C 1.53001 * 109.49263 * 181.31710 * 26 15 14 29 29 C 1.46934 * 120.62421 * 173.85094 * 12 10 9 30 30 H 1.09001 * 109.46971 * 270.18862 * 1 2 3 31 31 H 1.08997 * 109.47354 * 30.19017 * 1 2 3 32 32 H 1.09007 * 109.46672 * 150.19220 * 1 2 3 33 33 H 1.08998 * 109.47364 * 179.97438 * 5 4 3 34 34 H 1.08996 * 109.46964 * 179.97438 * 6 5 4 35 35 H 1.09000 * 109.47329 * 300.00441 * 6 5 4 36 36 H 1.09001 * 109.47036 * 60.00307 * 6 5 4 37 37 H 1.09003 * 109.47408 * 59.99699 * 7 5 4 38 38 H 1.08997 * 109.47119 * 180.02562 * 7 5 4 39 39 H 1.09001 * 109.47180 * 299.99724 * 7 5 4 40 40 H 1.09003 * 109.58579 * 6.58390 * 13 12 10 41 41 H 1.08998 * 109.70186 * 246.22902 * 13 12 10 42 42 H 1.09004 * 109.49811 * 294.68540 * 14 13 12 43 43 H 1.09000 * 109.50191 * 174.58639 * 14 13 12 44 44 H 0.97000 * 119.99572 * 264.99753 * 17 15 14 45 45 H 0.97002 * 120.00270 * 180.02562 * 21 20 18 46 46 H 1.09001 * 109.47243 * 60.00626 * 28 26 15 47 47 H 1.09003 * 109.46747 * 180.02562 * 28 26 15 48 48 H 1.08998 * 109.47701 * 300.00240 * 28 26 15 49 49 H 1.08997 * 109.58619 * 353.41300 * 29 12 10 50 50 H 1.08993 * 109.58437 * 113.84430 * 29 12 10 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 8 2.3061 1.0789 0.0000 4 6 3.5787 0.6581 -0.0058 5 6 4.7929 1.5508 -0.0128 6 6 4.7709 2.4318 -1.2635 7 6 4.7822 2.4361 1.2349 8 7 3.6002 -0.6410 -0.0037 9 6 2.3170 -1.0936 0.0042 10 6 1.8854 -2.5032 0.0084 11 8 0.7062 -2.7777 0.1220 12 7 2.7978 -3.4876 -0.1134 13 6 4.2070 -3.1729 -0.3852 14 6 5.0777 -3.8543 0.6751 15 6 4.7622 -5.3516 0.7032 16 1 5.3979 -5.8428 1.4399 17 7 5.0132 -5.9282 -0.6199 18 6 6.2756 -6.3341 -0.9617 19 1 7.0863 -6.2288 -0.2559 20 6 6.5133 -6.8809 -2.2152 21 7 7.7267 -7.2706 -2.5439 22 14 5.1112 -7.0624 -3.4362 23 1 4.4653 -8.3872 -3.2548 24 1 4.1117 -5.9886 -3.2054 25 1 5.6420 -6.9556 -4.8190 26 6 3.2931 -5.5581 1.0791 27 1 3.0999 -5.1076 2.0526 28 6 2.9871 -7.0560 1.1390 29 6 2.4021 -4.8961 0.0234 30 1 -0.3633 0.0034 1.0277 31 1 -0.3634 0.8882 -0.5168 32 1 -0.3633 -0.8918 -0.5109 33 1 5.6943 0.9381 -0.0161 34 1 5.6488 3.0778 -1.2683 35 1 4.7784 1.8011 -2.1525 36 1 3.8694 3.0446 -1.2605 37 1 4.7978 1.8084 2.1260 38 1 5.6601 3.0821 1.2296 39 1 3.8807 3.0489 1.2380 40 1 4.3553 -2.0939 -0.3416 41 1 4.4813 -3.5398 -1.3743 42 1 4.8677 -3.4198 1.6525 43 1 6.1299 -3.7088 0.4302 44 1 4.2852 -6.0224 -1.2539 45 1 7.8929 -7.6524 -3.4200 46 1 3.6233 -7.5271 1.8883 47 1 1.9406 -7.2025 1.4063 48 1 3.1793 -7.5054 0.1647 49 1 1.3597 -4.9540 0.3366 50 1 2.5276 -5.4053 -0.9321 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001036028670.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 19:03:54 Heat of formation + Delta-G solvation = 0.891854 kcal Electronic energy + Delta-G solvation = -30684.386592 eV Core-core repulsion = 26713.804626 eV Total energy + Delta-G solvation = -3970.581966 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 335.200 amu Computer time = 1.04 seconds Orbital eigenvalues (eV) -43.65563 -39.93457 -37.79613 -36.09588 -35.13972 -34.16918 -32.73164 -32.14822 -31.40375 -29.65929 -27.85053 -27.60626 -26.29572 -25.22439 -23.60894 -22.97538 -22.67696 -21.63703 -21.22643 -19.37409 -18.32261 -17.80411 -17.20279 -17.02088 -16.40014 -15.75330 -15.35154 -15.02572 -14.72195 -14.57687 -14.35297 -13.88806 -13.74576 -13.65962 -13.53971 -13.35918 -13.14816 -13.00498 -12.76244 -12.59873 -12.54942 -12.31320 -12.00971 -11.74848 -11.71879 -11.50998 -11.47704 -11.42410 -11.31164 -11.01248 -10.85749 -10.81840 -10.51395 -10.17678 -10.11671 -9.78437 -9.54035 -9.43139 -8.95657 -8.84303 -8.23012 -7.21836 -5.74997 -3.09099 0.98320 1.87867 2.27478 3.12247 3.33076 3.37481 3.40618 3.46003 3.62011 4.36082 4.51506 4.60209 4.60449 4.61748 4.85008 5.01431 5.14038 5.19412 5.20661 5.21573 5.25880 5.38235 5.38798 5.41649 5.48094 5.51366 5.62430 5.64510 5.68999 5.75308 5.77209 5.80186 5.85323 5.89700 5.97077 6.01725 6.09537 6.20514 6.38959 6.42680 6.52432 6.71075 6.73192 6.78754 6.89995 7.06510 7.36074 7.70170 8.02403 8.26708 8.44471 9.23242 9.96166 10.16690 11.43710 Molecular weight = 335.20amu Principal moments of inertia in cm(-1) A = 0.012243 B = 0.003769 C = 0.003309 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2286.467266 B = 7426.670412 C = 8460.763939 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.072 4.072 2 C 0.033 3.967 3 O -0.194 6.194 4 C 0.200 3.800 5 C 0.001 3.999 6 C -0.151 4.151 7 C -0.149 4.149 8 N -0.446 5.446 9 C -0.064 4.064 10 C 0.597 3.403 11 O -0.550 6.550 12 N -0.582 5.582 13 C 0.070 3.930 14 C -0.141 4.141 15 C 0.182 3.818 16 H 0.058 0.942 17 N -0.743 5.743 18 C -0.236 4.236 19 H 0.090 0.910 20 C 0.006 3.994 21 N -0.935 5.935 22 Si 0.877 3.123 23 H -0.284 1.284 24 H -0.279 1.279 25 H -0.292 1.292 26 C -0.111 4.111 27 H 0.070 0.930 28 C -0.137 4.137 29 C 0.118 3.882 30 H 0.091 0.909 31 H 0.078 0.922 32 H 0.110 0.890 33 H 0.118 0.882 34 H 0.074 0.926 35 H 0.064 0.936 36 H 0.062 0.938 37 H 0.063 0.937 38 H 0.074 0.926 39 H 0.062 0.938 40 H 0.141 0.859 41 H 0.068 0.932 42 H 0.048 0.952 43 H 0.076 0.924 44 H 0.359 0.641 45 H 0.258 0.742 46 H 0.058 0.942 47 H 0.045 0.955 48 H 0.064 0.936 49 H 0.086 0.914 50 H 0.067 0.933 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -11.154 20.123 7.387 24.164 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.128 4.128 2 C -0.023 4.023 3 O -0.081 6.081 4 C -0.008 4.008 5 C -0.019 4.019 6 C -0.208 4.208 7 C -0.207 4.207 8 N -0.175 5.175 9 C -0.184 4.184 10 C 0.384 3.616 11 O -0.430 6.430 12 N -0.312 5.312 13 C -0.052 4.052 14 C -0.182 4.182 15 C 0.073 3.927 16 H 0.076 0.924 17 N -0.387 5.387 18 C -0.366 4.366 19 H 0.108 0.892 20 C -0.190 4.190 21 N -0.583 5.583 22 Si 0.708 3.292 23 H -0.211 1.211 24 H -0.205 1.205 25 H -0.218 1.218 26 C -0.131 4.131 27 H 0.089 0.911 28 C -0.195 4.195 29 C -0.005 4.005 30 H 0.109 0.891 31 H 0.097 0.903 32 H 0.128 0.872 33 H 0.136 0.864 34 H 0.093 0.907 35 H 0.083 0.917 36 H 0.081 0.919 37 H 0.082 0.918 38 H 0.093 0.907 39 H 0.081 0.919 40 H 0.157 0.843 41 H 0.086 0.914 42 H 0.067 0.933 43 H 0.094 0.906 44 H 0.193 0.807 45 H 0.068 0.932 46 H 0.077 0.923 47 H 0.064 0.936 48 H 0.083 0.917 49 H 0.105 0.895 50 H 0.086 0.914 Dipole moment (debyes) X Y Z Total from point charges -10.966 19.539 7.429 23.605 hybrid contribution -1.237 0.047 -1.079 1.642 sum -12.203 19.586 6.350 23.934 Atomic orbital electron populations 1.20534 0.82609 1.05099 1.04551 1.23668 0.95027 0.83240 1.00382 1.84279 1.17890 1.36149 1.69786 1.26441 0.84018 0.90460 0.99916 1.19830 0.89965 0.94391 0.97676 1.21903 1.03111 0.99558 0.96270 1.21893 1.03114 0.99487 0.96243 1.70484 1.20973 1.07998 1.18069 1.21525 0.88632 0.95600 1.12605 1.16770 0.85149 0.82589 0.77064 1.90731 1.16432 1.83093 1.52755 1.47944 1.09800 1.05709 1.67732 1.22880 0.77590 1.05413 0.99330 1.22390 1.00231 0.98241 0.97358 1.20228 0.92198 0.91635 0.88654 0.92401 1.42827 1.08343 1.74932 1.12594 1.19070 0.85861 1.32597 0.99100 0.89180 1.24609 0.95828 1.01204 0.97314 1.69690 1.19017 1.48075 1.21543 0.86670 0.82717 0.77945 0.81884 1.21076 1.20537 1.21811 1.21750 0.96874 0.96271 0.98207 0.91128 1.21674 1.00025 0.94752 1.03072 1.21695 0.99407 0.79835 0.99538 0.89102 0.90343 0.87161 0.86404 0.90678 0.91718 0.91922 0.91805 0.90697 0.91921 0.84286 0.91351 0.93336 0.90572 0.80679 0.93159 0.92281 0.93553 0.91713 0.89536 0.91438 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.07 -0.69 9.82 36.00 0.35 -0.33 16 2 C 0.03 0.42 7.44 -35.08 -0.26 0.16 16 3 O -0.19 -2.28 10.73 6.51 0.07 -2.21 16 4 C 0.20 2.34 6.81 -13.08 -0.09 2.25 16 5 C 0.00 0.01 3.39 -91.77 -0.31 -0.31 16 6 C -0.15 -1.01 9.18 37.16 0.34 -0.67 16 7 C -0.15 -0.96 9.18 37.16 0.34 -0.61 16 8 N -0.45 -6.45 7.73 -7.65 -0.06 -6.51 16 9 C -0.06 -0.98 6.73 -83.02 -0.56 -1.54 16 10 C 0.60 10.24 7.68 -12.52 -0.10 10.14 16 11 O -0.55 -9.90 14.33 5.27 0.08 -9.82 16 12 N -0.58 -10.20 2.97 -174.04 -0.52 -10.72 16 13 C 0.07 1.25 6.07 -3.71 -0.02 1.22 16 14 C -0.14 -2.53 5.78 -26.61 -0.15 -2.69 16 15 C 0.18 3.49 2.53 -67.89 -0.17 3.32 16 16 H 0.06 1.15 8.08 -51.93 -0.42 0.73 16 17 N -0.74 -17.02 3.45 -53.39 -0.18 -17.20 16 18 C -0.24 -6.48 10.41 -15.06 -0.16 -6.63 16 19 H 0.09 2.65 8.06 -52.49 -0.42 2.23 16 20 C 0.01 0.17 5.50 -17.43 -0.10 0.08 16 21 N -0.94 -29.14 13.97 55.49 0.78 -28.36 16 22 Si 0.88 22.22 27.74 -169.99 -4.71 17.51 16 23 H -0.28 -7.15 7.11 56.52 0.40 -6.74 16 24 H -0.28 -6.77 6.52 56.52 0.37 -6.40 16 25 H -0.29 -7.53 7.11 56.52 0.40 -7.13 16 26 C -0.11 -1.83 2.67 -90.50 -0.24 -2.07 16 27 H 0.07 1.09 8.14 -51.93 -0.42 0.67 16 28 C -0.14 -2.14 9.05 37.16 0.34 -1.80 16 29 C 0.12 2.01 5.40 -3.71 -0.02 1.99 16 30 H 0.09 0.76 8.14 -51.93 -0.42 0.34 16 31 H 0.08 0.56 8.14 -51.93 -0.42 0.14 16 32 H 0.11 1.21 6.63 -51.93 -0.34 0.86 16 33 H 0.12 0.94 8.14 -51.93 -0.42 0.51 16 34 H 0.07 0.37 8.14 -51.93 -0.42 -0.06 16 35 H 0.06 0.50 8.14 -51.93 -0.42 0.07 16 36 H 0.06 0.41 8.14 -51.93 -0.42 -0.01 16 37 H 0.06 0.45 8.14 -51.93 -0.42 0.03 16 38 H 0.07 0.34 8.14 -51.93 -0.42 -0.08 16 39 H 0.06 0.39 8.14 -51.93 -0.42 -0.03 16 40 H 0.14 2.37 3.66 -77.33 -0.28 2.08 16 41 H 0.07 1.40 7.74 -51.93 -0.40 1.00 16 42 H 0.05 0.80 8.14 -51.93 -0.42 0.38 16 43 H 0.08 1.45 8.14 -51.93 -0.42 1.03 16 44 H 0.36 8.30 3.79 -40.82 -0.15 8.15 16 45 H 0.26 7.72 8.31 -40.82 -0.34 7.38 16 46 H 0.06 0.89 8.14 -51.93 -0.42 0.47 16 47 H 0.05 0.62 8.14 -51.93 -0.42 0.20 16 48 H 0.06 1.13 7.54 -51.93 -0.39 0.74 16 49 H 0.09 1.42 7.04 -51.93 -0.37 1.06 16 50 H 0.07 1.24 6.64 -51.93 -0.34 0.90 16 LS Contribution 390.73 15.07 5.89 5.89 Total: -1.00 -32.71 390.73 -7.69 -40.39 By element: Atomic # 1 Polarization: 16.73 SS G_CDS: -8.22 Total: 8.51 kcal Atomic # 6 Polarization: 3.32 SS G_CDS: -0.81 Total: 2.52 kcal Atomic # 7 Polarization: -62.81 SS G_CDS: 0.01 Total: -62.79 kcal Atomic # 8 Polarization: -12.17 SS G_CDS: 0.15 Total: -12.03 kcal Atomic # 14 Polarization: 22.22 SS G_CDS: -4.71 Total: 17.51 kcal Total LS contribution 5.89 Total: 5.89 kcal Total: -32.71 -7.69 -40.39 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001036028670.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 41.286 kcal (2) G-P(sol) polarization free energy of solvation -32.706 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 8.579 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.688 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.394 kcal (6) G-S(sol) free energy of system = (1) + (5) 0.892 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.04 seconds