Wall clock time and date at job start Tue Mar 31 2020 19:03:53 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50698 * 1 3 3 O 1.34265 * 126.52512 * 2 1 4 4 C 1.34042 * 108.22771 * 180.26146 * 3 2 1 5 5 C 1.50700 * 125.37875 * 179.76694 * 4 3 2 6 6 C 1.52999 * 109.47166 * 299.95810 * 5 4 3 7 7 C 1.52996 * 109.47073 * 59.96129 * 5 4 3 8 8 N 1.29935 * 109.24388 * 359.73437 * 4 3 2 9 9 C 1.36064 * 108.47843 * 359.97438 * 8 4 3 10 10 C 1.47427 * 126.45000 * 179.97438 * 9 8 4 11 11 O 1.21606 * 120.00011 * 174.19618 * 10 9 8 12 12 N 1.34774 * 119.99619 * 354.20170 * 10 9 8 13 13 C 1.46922 * 120.63472 * 353.86882 * 12 10 9 14 14 C 1.53193 * 108.77562 * 126.37180 * 13 12 10 15 15 C 1.53045 * 109.31098 * 54.63476 * 14 13 12 16 16 H 1.09003 * 109.45300 * 178.63096 * 15 14 13 17 17 N 1.46493 * 109.45970 * 58.65958 * 15 14 13 18 18 C 1.36938 * 120.00410 * 84.99655 * 17 15 14 19 19 H 1.08001 * 119.99576 * 359.97438 * 18 17 15 20 20 C 1.38811 * 120.00003 * 179.97438 * 18 17 15 21 21 N 1.31620 * 119.99943 * 179.97438 * 20 18 17 22 22 Si 1.86800 * 120.00058 * 0.02562 * 20 18 17 23 23 H 1.48497 * 109.46867 * 269.99651 * 22 20 18 24 24 H 1.48501 * 109.47356 * 29.99743 * 22 20 18 25 25 H 1.48500 * 109.47162 * 149.99776 * 22 20 18 26 26 C 1.53040 * 109.53624 * 298.63398 * 15 14 13 27 27 H 1.08993 * 109.50016 * 301.41308 * 26 15 14 28 28 C 1.53001 * 109.49263 * 181.31710 * 26 15 14 29 29 C 1.46934 * 120.62421 * 173.85094 * 12 10 9 30 30 H 1.09001 * 109.46971 * 270.18862 * 1 2 3 31 31 H 1.08997 * 109.47354 * 30.19017 * 1 2 3 32 32 H 1.09007 * 109.46672 * 150.19220 * 1 2 3 33 33 H 1.08998 * 109.47364 * 179.97438 * 5 4 3 34 34 H 1.08996 * 109.46964 * 179.97438 * 6 5 4 35 35 H 1.09000 * 109.47329 * 300.00441 * 6 5 4 36 36 H 1.09001 * 109.47036 * 60.00307 * 6 5 4 37 37 H 1.09003 * 109.47408 * 59.99699 * 7 5 4 38 38 H 1.08997 * 109.47119 * 180.02562 * 7 5 4 39 39 H 1.09001 * 109.47180 * 299.99724 * 7 5 4 40 40 H 1.09003 * 109.58579 * 6.58390 * 13 12 10 41 41 H 1.08998 * 109.70186 * 246.22902 * 13 12 10 42 42 H 1.09004 * 109.49811 * 294.68540 * 14 13 12 43 43 H 1.09000 * 109.50191 * 174.58639 * 14 13 12 44 44 H 0.97000 * 119.99572 * 264.99753 * 17 15 14 45 45 H 0.97002 * 120.00270 * 180.02562 * 21 20 18 46 46 H 1.09001 * 109.47243 * 60.00626 * 28 26 15 47 47 H 1.09003 * 109.46747 * 180.02562 * 28 26 15 48 48 H 1.08998 * 109.47701 * 300.00240 * 28 26 15 49 49 H 1.08997 * 109.58619 * 353.41300 * 29 12 10 50 50 H 1.08993 * 109.58437 * 113.84430 * 29 12 10 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 8 2.3061 1.0789 0.0000 4 6 3.5787 0.6581 -0.0058 5 6 4.7929 1.5508 -0.0128 6 6 4.7709 2.4318 -1.2635 7 6 4.7822 2.4361 1.2349 8 7 3.6002 -0.6410 -0.0037 9 6 2.3170 -1.0936 0.0042 10 6 1.8854 -2.5032 0.0084 11 8 0.7062 -2.7777 0.1220 12 7 2.7978 -3.4876 -0.1134 13 6 4.2070 -3.1729 -0.3852 14 6 5.0777 -3.8543 0.6751 15 6 4.7622 -5.3516 0.7032 16 1 5.3979 -5.8428 1.4399 17 7 5.0132 -5.9282 -0.6199 18 6 6.2756 -6.3341 -0.9617 19 1 7.0863 -6.2288 -0.2559 20 6 6.5133 -6.8809 -2.2152 21 7 7.7267 -7.2706 -2.5439 22 14 5.1112 -7.0624 -3.4362 23 1 4.4653 -8.3872 -3.2548 24 1 4.1117 -5.9886 -3.2054 25 1 5.6420 -6.9556 -4.8190 26 6 3.2931 -5.5581 1.0791 27 1 3.0999 -5.1076 2.0526 28 6 2.9871 -7.0560 1.1390 29 6 2.4021 -4.8961 0.0234 30 1 -0.3633 0.0034 1.0277 31 1 -0.3634 0.8882 -0.5168 32 1 -0.3633 -0.8918 -0.5109 33 1 5.6943 0.9381 -0.0161 34 1 5.6488 3.0778 -1.2683 35 1 4.7784 1.8011 -2.1525 36 1 3.8694 3.0446 -1.2605 37 1 4.7978 1.8084 2.1260 38 1 5.6601 3.0821 1.2296 39 1 3.8807 3.0489 1.2380 40 1 4.3553 -2.0939 -0.3416 41 1 4.4813 -3.5398 -1.3743 42 1 4.8677 -3.4198 1.6525 43 1 6.1299 -3.7088 0.4302 44 1 4.2852 -6.0224 -1.2539 45 1 7.8929 -7.6524 -3.4200 46 1 3.6233 -7.5271 1.8883 47 1 1.9406 -7.2025 1.4063 48 1 3.1793 -7.5054 0.1647 49 1 1.3597 -4.9540 0.3366 50 1 2.5276 -5.4053 -0.9321 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001036028670.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 19:03:53 Heat of formation + Delta-G solvation = -19.823725 kcal Electronic energy + Delta-G solvation = -30685.284887 eV Core-core repulsion = 26713.804626 eV Total energy + Delta-G solvation = -3971.480261 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 335.200 amu Computer time = 1.10 seconds Orbital eigenvalues (eV) -44.63233 -41.30690 -39.24494 -36.80614 -36.25845 -35.73598 -34.38207 -33.18733 -32.96517 -31.48153 -28.89699 -28.10645 -27.54395 -26.64171 -25.14266 -24.43894 -23.61318 -23.02618 -22.25551 -20.60290 -19.86666 -19.68740 -18.42637 -18.05539 -17.36717 -16.99638 -16.69953 -16.36332 -16.18350 -15.82972 -15.54433 -15.29150 -15.13932 -14.89450 -14.55799 -14.45128 -14.43979 -14.30006 -13.86874 -13.78039 -13.50541 -13.32371 -13.12354 -13.04904 -12.95366 -12.74426 -12.59812 -12.56304 -12.47199 -12.28102 -12.15533 -12.07914 -11.98710 -11.96296 -11.71598 -11.43767 -11.25159 -11.07971 -10.56011 -9.98914 -9.61483 -9.24364 -8.00227 -5.30599 -0.03392 0.84300 1.34011 1.34849 1.36340 1.41402 1.87034 2.10591 2.46776 2.68610 3.31344 3.39791 3.52714 3.59584 3.77314 3.90089 3.96305 4.04625 4.06392 4.13350 4.21257 4.28255 4.35173 4.37459 4.48572 4.55316 4.56592 4.67277 4.73045 4.76116 4.80498 4.85267 4.87641 4.90134 4.98493 5.06147 5.07498 5.09115 5.12657 5.20380 5.23756 5.29667 5.30632 5.41345 5.48354 5.70479 5.81984 6.22388 6.25318 6.46237 6.95981 7.10209 7.87118 8.06042 9.21855 Molecular weight = 335.20amu Principal moments of inertia in cm(-1) A = 0.012243 B = 0.003769 C = 0.003309 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2286.467266 B = 7426.670412 C = 8460.763939 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.071 4.071 2 C 0.048 3.952 3 O -0.188 6.188 4 C 0.209 3.791 5 C -0.002 4.002 6 C -0.147 4.147 7 C -0.144 4.144 8 N -0.477 5.477 9 C -0.102 4.102 10 C 0.596 3.404 11 O -0.562 6.562 12 N -0.589 5.589 13 C 0.079 3.921 14 C -0.132 4.132 15 C 0.176 3.824 16 H 0.051 0.949 17 N -0.741 5.741 18 C -0.213 4.213 19 H 0.062 0.938 20 C -0.057 4.057 21 N -0.983 5.983 22 Si 0.939 3.061 23 H -0.277 1.277 24 H -0.265 1.265 25 H -0.298 1.298 26 C -0.100 4.100 27 H 0.089 0.911 28 C -0.134 4.134 29 C 0.119 3.881 30 H 0.106 0.894 31 H 0.107 0.893 32 H 0.096 0.904 33 H 0.118 0.882 34 H 0.097 0.903 35 H 0.050 0.950 36 H 0.066 0.934 37 H 0.054 0.946 38 H 0.097 0.903 39 H 0.065 0.935 40 H 0.153 0.847 41 H 0.037 0.963 42 H 0.068 0.932 43 H 0.058 0.942 44 H 0.361 0.639 45 H 0.255 0.745 46 H 0.061 0.939 47 H 0.072 0.928 48 H 0.042 0.958 49 H 0.097 0.903 50 H 0.052 0.948 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -13.232 22.421 8.280 27.319 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.127 4.127 2 C -0.009 4.009 3 O -0.075 6.075 4 C 0.001 3.999 5 C -0.021 4.021 6 C -0.204 4.204 7 C -0.202 4.202 8 N -0.205 5.205 9 C -0.220 4.220 10 C 0.385 3.615 11 O -0.443 6.443 12 N -0.318 5.318 13 C -0.043 4.043 14 C -0.173 4.173 15 C 0.068 3.932 16 H 0.069 0.931 17 N -0.385 5.385 18 C -0.345 4.345 19 H 0.080 0.920 20 C -0.248 4.248 21 N -0.635 5.635 22 Si 0.768 3.232 23 H -0.204 1.204 24 H -0.191 1.191 25 H -0.225 1.225 26 C -0.120 4.120 27 H 0.107 0.893 28 C -0.192 4.192 29 C -0.004 4.004 30 H 0.125 0.875 31 H 0.126 0.874 32 H 0.115 0.885 33 H 0.136 0.864 34 H 0.116 0.884 35 H 0.070 0.930 36 H 0.085 0.915 37 H 0.073 0.927 38 H 0.116 0.884 39 H 0.084 0.916 40 H 0.169 0.831 41 H 0.056 0.944 42 H 0.086 0.914 43 H 0.077 0.923 44 H 0.195 0.805 45 H 0.064 0.936 46 H 0.080 0.920 47 H 0.091 0.909 48 H 0.061 0.939 49 H 0.115 0.885 50 H 0.070 0.930 Dipole moment (debyes) X Y Z Total from point charges -13.089 21.855 8.362 26.812 hybrid contribution -0.583 -0.541 -1.251 1.482 sum -13.671 21.314 7.111 26.301 Atomic orbital electron populations 1.20668 0.80455 1.05813 1.05721 1.24168 0.96145 0.82694 0.97869 1.84324 1.17876 1.35640 1.69645 1.27165 0.84797 0.90144 0.97807 1.20107 0.88263 0.94402 0.99343 1.21899 1.04443 0.99320 0.94772 1.21883 1.04398 0.99227 0.94703 1.70262 1.20987 1.09476 1.19797 1.21392 0.89664 0.95221 1.15742 1.17009 0.84863 0.83299 0.76343 1.90710 1.16724 1.83566 1.53283 1.47959 1.09558 1.06025 1.68293 1.22758 0.78018 1.06126 0.97436 1.22249 0.99238 0.97318 0.98454 1.20445 0.94294 0.91976 0.86523 0.93111 1.42784 1.06633 1.74937 1.14144 1.19025 0.86823 1.30491 0.98116 0.92015 1.25259 0.98022 1.02202 0.99363 1.69850 1.21303 1.50297 1.22009 0.85650 0.80061 0.78421 0.79031 1.20367 1.19066 1.22491 1.21666 0.94357 0.97185 0.98778 0.89271 1.21647 1.01882 0.93661 1.01980 1.21680 1.00040 0.79766 0.98894 0.87525 0.87442 0.88525 0.86419 0.88402 0.93046 0.91520 0.92682 0.88440 0.91583 0.83063 0.94436 0.91375 0.92293 0.80522 0.93559 0.91953 0.90860 0.93861 0.88517 0.92997 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.07 -1.17 9.82 71.24 0.70 -0.47 16 2 C 0.05 1.13 7.44 25.19 0.19 1.32 16 3 O -0.19 -4.00 10.73 0.38 0.00 -4.00 16 4 C 0.21 4.59 6.81 88.39 0.60 5.20 16 5 C 0.00 -0.03 3.39 -11.54 -0.04 -0.07 16 6 C -0.15 -1.64 9.18 71.98 0.66 -0.98 16 7 C -0.14 -1.48 9.18 71.98 0.66 -0.82 16 8 N -0.48 -13.37 7.73 -293.04 -2.26 -15.64 16 9 C -0.10 -3.01 6.73 40.41 0.27 -2.73 16 10 C 0.60 19.92 7.68 86.66 0.67 20.58 16 11 O -0.56 -19.54 14.33 -4.05 -0.06 -19.60 16 12 N -0.59 -20.23 2.97 -822.79 -2.45 -22.68 16 13 C 0.08 2.83 6.07 86.36 0.52 3.35 16 14 C -0.13 -4.71 5.78 30.67 0.18 -4.53 16 15 C 0.18 6.68 2.53 45.02 0.11 6.80 16 16 H 0.05 2.01 8.08 -2.39 -0.02 1.99 16 17 N -0.74 -34.18 3.45 -322.82 -1.11 -35.30 16 18 C -0.21 -11.97 10.41 84.03 0.87 -11.10 16 19 H 0.06 3.77 8.06 -2.91 -0.02 3.75 16 20 C -0.06 -3.37 5.50 84.86 0.47 -2.91 16 21 N -0.98 -63.10 13.97 21.65 0.30 -62.80 16 22 Si 0.94 46.71 27.74 68.60 1.90 48.62 16 23 H -0.28 -13.42 7.11 99.48 0.71 -12.71 16 24 H -0.27 -12.41 6.52 99.48 0.65 -11.76 16 25 H -0.30 -15.06 7.11 99.48 0.71 -14.36 16 26 C -0.10 -3.15 2.67 -10.72 -0.03 -3.18 16 27 H 0.09 2.54 8.14 -2.39 -0.02 2.52 16 28 C -0.13 -3.94 9.05 71.98 0.65 -3.29 16 29 C 0.12 3.92 5.40 86.36 0.47 4.39 16 30 H 0.11 1.49 8.14 -2.39 -0.02 1.47 16 31 H 0.11 1.17 8.14 -2.39 -0.02 1.15 16 32 H 0.10 1.95 6.63 -2.38 -0.02 1.93 16 33 H 0.12 1.70 8.14 -2.39 -0.02 1.68 16 34 H 0.10 0.66 8.14 -2.39 -0.02 0.64 16 35 H 0.05 0.72 8.14 -2.39 -0.02 0.70 16 36 H 0.07 0.70 8.14 -2.39 -0.02 0.68 16 37 H 0.05 0.67 8.14 -2.39 -0.02 0.65 16 38 H 0.10 0.58 8.14 -2.39 -0.02 0.56 16 39 H 0.07 0.65 8.14 -2.39 -0.02 0.63 16 40 H 0.15 5.15 3.66 -52.54 -0.19 4.96 16 41 H 0.04 1.56 7.74 -2.39 -0.02 1.54 16 42 H 0.07 2.17 8.14 -2.39 -0.02 2.15 16 43 H 0.06 2.29 8.14 -2.39 -0.02 2.27 16 44 H 0.36 16.60 3.79 -92.71 -0.35 16.25 16 45 H 0.26 15.74 8.31 -92.71 -0.77 14.97 16 46 H 0.06 1.78 8.14 -2.39 -0.02 1.76 16 47 H 0.07 1.76 8.14 -2.39 -0.02 1.74 16 48 H 0.04 1.46 7.54 -2.39 -0.02 1.44 16 49 H 0.10 3.01 7.04 -2.39 -0.02 3.00 16 50 H 0.05 1.87 6.64 -2.39 -0.02 1.86 16 Total: -1.00 -71.99 390.73 3.63 -68.36 By element: Atomic # 1 Polarization: 31.13 SS G_CDS: 0.35 Total: 31.48 kcal Atomic # 6 Polarization: 4.61 SS G_CDS: 6.95 Total: 11.56 kcal Atomic # 7 Polarization: -130.89 SS G_CDS: -5.52 Total: -136.41 kcal Atomic # 8 Polarization: -23.55 SS G_CDS: -0.05 Total: -23.60 kcal Atomic # 14 Polarization: 46.71 SS G_CDS: 1.90 Total: 48.62 kcal Total: -71.99 3.63 -68.36 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001036028670.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 48.533 kcal (2) G-P(sol) polarization free energy of solvation -71.988 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -23.455 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.631 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -68.357 kcal (6) G-S(sol) free energy of system = (1) + (5) -19.824 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.10 seconds