Wall clock time and date at job start Tue Mar 31 2020 20:09:58 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50700 * 1 3 3 N 1.33695 * 126.27459 * 2 1 4 4 C 1.30612 * 108.99452 * 180.25381 * 3 2 1 5 5 C 1.50710 * 125.42114 * 179.78376 * 4 3 2 6 6 C 1.52996 * 109.47278 * 299.98130 * 5 4 3 7 7 C 1.53004 * 109.46642 * 59.97906 * 5 4 3 8 8 O 1.33661 * 109.15874 * 359.76671 * 4 3 2 9 9 C 1.35345 * 107.68522 * 0.02562 * 8 4 3 10 10 C 1.46719 * 126.64525 * 179.97438 * 9 8 4 11 11 O 1.21683 * 119.99849 * 172.49233 * 10 9 8 12 12 N 1.34771 * 119.99788 * 352.48048 * 10 9 8 13 13 C 1.46921 * 120.63554 * 352.85656 * 12 10 9 14 14 C 1.53191 * 108.77686 * 233.58599 * 13 12 10 15 15 C 1.53041 * 109.31162 * 305.36213 * 14 13 12 16 16 H 1.09000 * 109.46094 * 181.38460 * 15 14 13 17 17 N 1.46499 * 109.45800 * 301.34665 * 15 14 13 18 18 C 1.36941 * 119.99830 * 274.99447 * 17 15 14 19 19 H 1.07995 * 119.99883 * 0.02562 * 18 17 15 20 20 C 1.38806 * 120.00012 * 180.02562 * 18 17 15 21 21 N 1.31624 * 120.00388 * 180.02562 * 20 18 17 22 22 Si 1.86804 * 119.99968 * 359.97438 * 20 18 17 23 23 H 1.48498 * 109.46798 * 90.00255 * 22 20 18 24 24 H 1.48502 * 109.47288 * 210.00275 * 22 20 18 25 25 H 1.48494 * 109.47126 * 330.00260 * 22 20 18 26 26 C 1.53037 * 109.53721 * 61.36335 * 15 14 13 27 27 H 1.09005 * 109.49509 * 58.59228 * 26 15 14 28 28 C 1.53001 * 109.49802 * 178.68328 * 26 15 14 29 29 C 1.46933 * 120.62651 * 172.83014 * 12 10 9 30 30 H 1.08996 * 109.46940 * 270.13315 * 1 2 3 31 31 H 1.08993 * 109.46972 * 30.14076 * 1 2 3 32 32 H 1.09010 * 109.46653 * 150.14015 * 1 2 3 33 33 H 1.08997 * 109.47239 * 179.97438 * 5 4 3 34 34 H 1.08997 * 109.47256 * 59.99680 * 6 5 4 35 35 H 1.08995 * 109.47057 * 180.02562 * 6 5 4 36 36 H 1.09006 * 109.47161 * 299.99561 * 6 5 4 37 37 H 1.09002 * 109.46853 * 180.02562 * 7 5 4 38 38 H 1.08997 * 109.47217 * 299.99907 * 7 5 4 39 39 H 1.08994 * 109.47496 * 59.99928 * 7 5 4 40 40 H 1.08996 * 109.59076 * 113.79408 * 13 12 10 41 41 H 1.09006 * 109.58465 * 353.36680 * 13 12 10 42 42 H 1.09001 * 109.50096 * 185.41313 * 14 13 12 43 43 H 1.09000 * 109.52804 * 65.33026 * 14 13 12 44 44 H 0.97000 * 120.00446 * 95.00447 * 17 15 14 45 45 H 0.96995 * 120.00398 * 179.97438 * 21 20 18 46 46 H 1.08995 * 109.47442 * 60.00106 * 28 26 15 47 47 H 1.09004 * 109.47092 * 180.02562 * 28 26 15 48 48 H 1.09009 * 109.47331 * 300.00019 * 28 26 15 49 49 H 1.08998 * 109.58626 * 246.20387 * 29 12 10 50 50 H 1.09001 * 109.58774 * 6.48688 * 29 12 10 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 7 2.2980 1.0778 0.0000 4 6 3.5452 0.6899 -0.0055 5 6 4.7440 1.6031 -0.0120 6 6 4.7071 2.4844 -1.2621 7 6 4.7181 2.4875 1.2363 8 8 3.5890 -0.6460 -0.0040 9 6 2.3137 -1.0992 0.0021 10 6 1.8828 -2.5017 0.0052 11 8 0.7060 -2.7763 0.1484 12 7 2.7903 -3.4858 -0.1508 13 6 4.1870 -3.1709 -0.4801 14 6 4.5892 -3.9606 -1.7296 15 6 4.3186 -5.4488 -1.4967 16 1 4.6267 -6.0158 -2.3751 17 7 5.0774 -5.9060 -0.3300 18 6 6.3812 -6.2998 -0.4726 19 1 6.8501 -6.2730 -1.4451 20 6 7.1001 -6.7336 0.6327 21 7 8.3534 -7.1116 0.4958 22 14 6.2893 -6.7793 2.3150 23 1 5.6512 -8.1043 2.5210 24 1 7.3151 -6.5553 3.3652 25 1 5.2572 -5.7148 2.3962 26 6 2.8238 -5.6645 -1.2492 27 1 2.2570 -5.3018 -2.1067 28 6 2.5495 -7.1564 -1.0489 29 6 2.4016 -4.8941 0.0058 30 1 -0.3633 0.0024 1.0276 31 1 -0.3633 0.8887 -0.5160 32 1 -0.3633 -0.8913 -0.5117 33 1 5.6558 1.0059 -0.0152 34 1 3.7953 3.0816 -1.2588 35 1 5.5743 3.1445 -1.2670 36 1 4.7255 1.8543 -2.1515 37 1 5.5850 3.1483 1.2314 38 1 3.8064 3.0848 1.2396 39 1 4.7444 1.8598 2.1270 40 1 4.8312 -3.4521 0.3529 41 1 4.2844 -2.1030 -0.6758 42 1 5.6503 -3.8107 -1.9290 43 1 4.0062 -3.6140 -2.5830 44 1 4.6564 -5.9299 0.5436 45 1 8.8559 -7.4144 1.2682 46 1 3.1155 -7.5179 -0.1905 47 1 1.4847 -7.3096 -0.8731 48 1 2.8526 -7.7045 -1.9411 49 1 2.9002 -5.3159 0.8785 50 1 1.3213 -4.9631 0.1333 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001036220760.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 20:09:58 Heat of formation + Delta-G solvation = -24.043211 kcal Electronic energy + Delta-G solvation = -30710.574669 eV Core-core repulsion = 26738.911437 eV Total energy + Delta-G solvation = -3971.663231 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 335.200 amu Computer time = 1.16 seconds Orbital eigenvalues (eV) -44.66597 -41.37772 -39.33448 -37.03594 -36.44024 -35.82504 -34.54480 -33.24878 -32.07408 -31.56858 -29.35630 -28.12594 -27.62616 -26.71888 -25.26352 -24.79728 -23.24634 -22.93321 -21.51320 -21.44473 -20.11334 -19.80814 -18.45844 -18.18456 -17.49147 -17.33788 -16.74536 -16.34854 -15.91889 -15.86286 -15.50229 -15.27026 -15.16731 -14.93900 -14.58449 -14.51997 -14.28785 -14.20109 -14.09432 -13.67893 -13.37505 -13.32646 -13.12439 -13.05747 -12.96205 -12.76743 -12.73369 -12.57731 -12.34639 -12.22544 -12.12017 -12.04579 -11.96985 -11.94451 -11.72340 -11.61369 -11.32255 -11.24213 -10.93284 -10.11940 -9.70059 -9.27202 -8.00008 -5.31255 -0.36451 1.16284 1.24326 1.34531 1.36114 1.42744 1.79631 1.89715 2.47113 2.72111 3.29192 3.32285 3.55531 3.57324 3.71284 3.89156 3.91863 3.92357 3.99847 4.01489 4.17960 4.25246 4.34188 4.38747 4.44160 4.53468 4.63577 4.65629 4.73388 4.75014 4.77585 4.78434 4.88122 4.90081 4.93880 4.97497 5.05338 5.07168 5.12370 5.15903 5.19081 5.23826 5.28574 5.35949 5.38390 5.52143 5.82198 6.08043 6.24129 6.44153 6.76449 7.10279 7.86490 8.04903 9.21846 Molecular weight = 335.20amu Principal moments of inertia in cm(-1) A = 0.011775 B = 0.003906 C = 0.003307 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2377.294391 B = 7166.375613 C = 8464.289140 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.074 4.074 2 C 0.081 3.919 3 N -0.497 5.497 4 C 0.226 3.774 5 C -0.007 4.007 6 C -0.138 4.138 7 C -0.139 4.139 8 O -0.187 6.187 9 C -0.142 4.142 10 C 0.606 3.394 11 O -0.541 6.541 12 N -0.595 5.595 13 C 0.111 3.889 14 C -0.140 4.140 15 C 0.177 3.823 16 H 0.055 0.945 17 N -0.742 5.742 18 C -0.214 4.214 19 H 0.063 0.937 20 C -0.056 4.056 21 N -0.983 5.983 22 Si 0.938 3.062 23 H -0.279 1.279 24 H -0.300 1.300 25 H -0.261 1.261 26 C -0.101 4.101 27 H 0.092 0.908 28 C -0.135 4.135 29 C 0.119 3.881 30 H 0.089 0.911 31 H 0.093 0.907 32 H 0.085 0.915 33 H 0.113 0.887 34 H 0.063 0.937 35 H 0.099 0.901 36 H 0.054 0.946 37 H 0.100 0.900 38 H 0.063 0.937 39 H 0.050 0.950 40 H 0.057 0.943 41 H 0.101 0.899 42 H 0.067 0.933 43 H 0.075 0.925 44 H 0.362 0.638 45 H 0.255 0.745 46 H 0.043 0.957 47 H 0.072 0.928 48 H 0.061 0.939 49 H 0.058 0.942 50 H 0.101 0.899 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -13.095 18.621 -2.701 22.924 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.130 4.130 2 C -0.044 4.044 3 N -0.226 5.226 4 C 0.021 3.979 5 C -0.026 4.026 6 C -0.196 4.196 7 C -0.197 4.197 8 O -0.075 6.075 9 C -0.196 4.196 10 C 0.395 3.605 11 O -0.421 6.421 12 N -0.325 5.325 13 C -0.010 4.010 14 C -0.181 4.181 15 C 0.069 3.931 16 H 0.073 0.927 17 N -0.386 5.386 18 C -0.345 4.345 19 H 0.081 0.919 20 C -0.247 4.247 21 N -0.634 5.634 22 Si 0.767 3.233 23 H -0.206 1.206 24 H -0.227 1.227 25 H -0.186 1.186 26 C -0.121 4.121 27 H 0.111 0.889 28 C -0.193 4.193 29 C -0.003 4.003 30 H 0.107 0.893 31 H 0.112 0.888 32 H 0.103 0.897 33 H 0.132 0.868 34 H 0.082 0.918 35 H 0.118 0.882 36 H 0.073 0.927 37 H 0.119 0.881 38 H 0.082 0.918 39 H 0.069 0.931 40 H 0.076 0.924 41 H 0.119 0.881 42 H 0.086 0.914 43 H 0.093 0.907 44 H 0.196 0.804 45 H 0.064 0.936 46 H 0.062 0.938 47 H 0.091 0.909 48 H 0.080 0.920 49 H 0.076 0.924 50 H 0.119 0.881 Dipole moment (debyes) X Y Z Total from point charges -13.645 18.987 -2.727 23.540 hybrid contribution 0.573 -1.241 1.256 1.856 sum -13.072 17.746 -1.471 22.090 Atomic orbital electron populations 1.20381 0.83948 1.04481 1.04240 1.22462 0.99273 0.86272 0.96370 1.70323 1.00675 1.30705 1.20921 1.27611 0.96532 0.79621 0.94114 1.20146 0.89478 0.93159 0.99844 1.21835 1.04298 0.99204 0.94238 1.21841 1.04337 0.99185 0.94325 1.84670 1.29265 1.23897 1.69702 1.22772 0.81879 0.95986 1.18982 1.16557 0.85129 0.81826 0.77038 1.90794 1.16416 1.82138 1.52794 1.48046 1.10171 1.06581 1.67725 1.21987 0.79948 1.00737 0.98358 1.22375 1.01600 0.97538 0.96553 1.20421 0.90123 0.92523 0.90019 0.92684 1.42799 1.10307 1.79164 1.06289 1.19007 0.87689 1.33032 0.94819 0.91914 1.25265 0.96275 1.02407 1.00799 1.69849 1.10269 1.52829 1.30464 0.85679 0.77807 0.78433 0.81403 1.20552 1.22689 1.18603 1.21684 0.95812 0.96661 0.97908 0.88943 1.21651 1.01660 0.93705 1.02259 1.21754 1.01817 0.78531 0.98159 0.89258 0.88843 0.89680 0.86849 0.91814 0.88205 0.92669 0.88145 0.91791 0.93051 0.92425 0.88112 0.91448 0.90687 0.80420 0.93568 0.93777 0.90875 0.91953 0.92368 0.88118 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.07 -1.58 9.80 71.24 0.70 -0.88 16 2 C 0.08 2.15 7.16 41.83 0.30 2.45 16 3 N -0.50 -12.61 11.26 -291.05 -3.28 -15.89 16 4 C 0.23 5.29 6.82 88.29 0.60 5.89 16 5 C -0.01 -0.11 3.39 -11.54 -0.04 -0.14 16 6 C -0.14 -1.68 9.18 71.98 0.66 -1.02 16 7 C -0.14 -1.78 9.18 71.98 0.66 -1.12 16 8 O -0.19 -5.15 7.45 -7.07 -0.05 -5.20 16 9 C -0.14 -4.17 6.79 24.05 0.16 -4.01 16 10 C 0.61 19.07 7.65 86.46 0.66 19.73 16 11 O -0.54 -18.08 14.33 -4.29 -0.06 -18.15 16 12 N -0.59 -18.44 2.97 -823.58 -2.45 -20.88 16 13 C 0.11 3.52 5.87 86.36 0.51 4.03 16 14 C -0.14 -4.42 5.78 30.67 0.18 -4.24 16 15 C 0.18 6.13 2.53 45.02 0.11 6.25 16 16 H 0.06 2.00 8.08 -2.39 -0.02 1.98 16 17 N -0.74 -31.82 3.44 -322.82 -1.11 -32.94 16 18 C -0.21 -11.44 10.41 84.03 0.87 -10.56 16 19 H 0.06 3.67 8.06 -2.91 -0.02 3.64 16 20 C -0.06 -3.18 5.50 84.86 0.47 -2.72 16 21 N -0.98 -61.35 13.97 21.65 0.30 -61.05 16 22 Si 0.94 44.73 27.74 68.60 1.90 46.64 16 23 H -0.28 -13.05 7.11 99.48 0.71 -12.35 16 24 H -0.30 -14.69 7.11 99.48 0.71 -13.98 16 25 H -0.26 -11.46 6.52 99.48 0.65 -10.81 16 26 C -0.10 -2.87 2.67 -10.72 -0.03 -2.90 16 27 H 0.09 2.35 8.14 -2.38 -0.02 2.33 16 28 C -0.13 -3.65 9.05 71.98 0.65 -3.00 16 29 C 0.12 3.56 5.43 86.36 0.47 4.03 16 30 H 0.09 1.77 8.14 -2.39 -0.02 1.75 16 31 H 0.09 1.63 8.14 -2.39 -0.02 1.62 16 32 H 0.08 1.96 6.66 -2.38 -0.02 1.95 16 33 H 0.11 1.52 8.14 -2.39 -0.02 1.50 16 34 H 0.06 0.87 8.14 -2.39 -0.02 0.85 16 35 H 0.10 0.72 8.14 -2.39 -0.02 0.70 16 36 H 0.05 0.74 8.14 -2.38 -0.02 0.72 16 37 H 0.10 0.78 8.14 -2.39 -0.02 0.76 16 38 H 0.06 0.91 8.14 -2.39 -0.02 0.89 16 39 H 0.05 0.76 8.14 -2.39 -0.02 0.74 16 40 H 0.06 2.10 7.74 -2.39 -0.02 2.09 16 41 H 0.10 2.97 4.26 -15.03 -0.06 2.91 16 42 H 0.07 2.32 8.14 -2.39 -0.02 2.30 16 43 H 0.07 2.05 8.14 -2.39 -0.02 2.03 16 44 H 0.36 15.43 3.79 -92.71 -0.35 15.08 16 45 H 0.26 15.35 8.31 -92.71 -0.77 14.58 16 46 H 0.04 1.38 7.54 -2.39 -0.02 1.36 16 47 H 0.07 1.61 8.14 -2.39 -0.02 1.59 16 48 H 0.06 1.65 8.14 -2.38 -0.02 1.63 16 49 H 0.06 1.88 6.64 -2.39 -0.02 1.87 16 50 H 0.10 2.84 7.00 -2.39 -0.02 2.83 16 Total: -1.00 -67.80 391.15 2.67 -65.13 By element: Atomic # 1 Polarization: 30.08 SS G_CDS: 0.48 Total: 30.56 kcal Atomic # 6 Polarization: 4.84 SS G_CDS: 6.94 Total: 11.78 kcal Atomic # 7 Polarization: -124.23 SS G_CDS: -6.53 Total: -130.76 kcal Atomic # 8 Polarization: -23.23 SS G_CDS: -0.11 Total: -23.35 kcal Atomic # 14 Polarization: 44.73 SS G_CDS: 1.90 Total: 46.64 kcal Total: -67.80 2.67 -65.13 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001036220760.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 41.086 kcal (2) G-P(sol) polarization free energy of solvation -67.798 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -26.713 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.669 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -65.129 kcal (6) G-S(sol) free energy of system = (1) + (5) -24.043 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.16 seconds