Wall clock time and date at job start Tue Mar 31 2020 18:55:12 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 C 1.50697 * 110.85578 * 2 1 4 4 O 1.21280 * 119.99993 * 241.24252 * 3 2 1 5 5 N 1.34777 * 120.00209 * 61.24654 * 3 2 1 6 6 C 1.48206 * 127.05422 * 184.56364 * 5 3 2 7 7 C 1.55050 * 103.34076 * 219.04058 * 6 5 3 8 8 C 1.54157 * 102.72963 * 323.03021 * 7 6 5 9 9 C 1.47610 * 127.02184 * 4.64533 * 5 3 2 10 10 C 1.52497 * 110.05655 * 140.61055 * 8 7 6 11 11 C 1.53135 * 109.60498 * 181.73085 * 10 8 7 12 12 C 1.53177 * 109.29358 * 299.49633 * 11 10 8 13 13 N 1.46929 * 108.89599 * 55.06706 * 12 11 10 14 14 C 1.36938 * 120.68234 * 125.95471 * 13 12 11 15 15 H 1.07996 * 120.00502 * 331.30935 * 14 13 12 16 16 C 1.38816 * 119.99816 * 151.31170 * 14 13 12 17 17 N 1.31617 * 120.00066 * 342.38720 * 16 14 13 18 18 Si 1.86796 * 120.00033 * 162.38588 * 16 14 13 19 19 H 1.48509 * 109.47191 * 359.97438 * 18 16 14 20 20 H 1.48496 * 109.47173 * 119.99648 * 18 16 14 21 21 H 1.48503 * 109.47161 * 239.99922 * 18 16 14 22 22 C 1.47035 * 118.63640 * 305.97874 * 13 12 11 23 23 C 1.54481 * 110.96559 * 236.21256 * 2 1 3 24 24 N 1.46766 * 105.47372 * 267.25617 * 23 2 1 25 25 C 1.34419 * 111.30007 * 342.99144 * 24 23 2 26 26 O 1.21276 * 124.94251 * 180.37033 * 25 24 23 27 27 C 1.51283 * 110.11628 * 0.39985 * 25 24 23 28 28 H 1.09000 * 109.47233 * 58.23925 * 1 2 3 29 29 H 1.08998 * 109.47075 * 178.24106 * 1 2 3 30 30 H 1.09000 * 109.47196 * 298.24404 * 1 2 3 31 31 H 1.08996 * 110.62253 * 100.58794 * 6 5 3 32 32 H 1.09001 * 110.80041 * 337.57617 * 6 5 3 33 33 H 1.09000 * 110.76278 * 204.72046 * 7 6 5 34 34 H 1.08994 * 110.75798 * 81.33339 * 7 6 5 35 35 H 1.08998 * 109.97799 * 35.23207 * 9 5 3 36 36 H 1.09003 * 109.97248 * 273.99704 * 9 5 3 37 37 H 1.08993 * 109.44630 * 301.77476 * 10 8 7 38 38 H 1.08995 * 109.44656 * 61.69451 * 10 8 7 39 39 H 1.08995 * 109.50020 * 179.54862 * 11 10 8 40 40 H 1.08999 * 109.52723 * 59.45846 * 11 10 8 41 41 H 1.08994 * 109.56970 * 295.24116 * 12 11 10 42 42 H 1.09001 * 109.56764 * 174.89009 * 12 11 10 43 43 H 0.97003 * 119.99786 * 180.02562 * 17 16 14 44 44 H 1.09001 * 109.57845 * 292.99881 * 22 13 12 45 45 H 1.09003 * 109.70010 * 172.65622 * 22 13 12 46 46 H 1.09000 * 110.25147 * 26.26199 * 23 2 1 47 47 H 1.09000 * 110.24448 * 148.26033 * 23 2 1 48 48 H 0.97001 * 124.34665 * 163.00316 * 24 23 2 49 49 H 1.08995 * 110.48655 * 257.57914 * 27 25 24 50 50 H 1.08997 * 110.48301 * 134.93514 * 27 25 24 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0665 1.4082 0.0000 4 8 2.7546 1.7950 -0.9208 5 7 1.7818 2.2379 1.0233 6 6 2.1445 3.6702 1.1392 7 6 2.5217 3.8238 2.6352 8 6 1.5119 2.8943 3.3373 9 6 1.0460 1.9052 2.2589 10 6 2.1936 2.1500 4.4805 11 6 1.1932 1.1983 5.1427 12 6 0.0188 2.0075 5.7018 13 7 -0.5584 2.8176 4.6204 14 6 -1.8947 2.7455 4.3302 15 1 -2.4408 1.8339 4.5229 16 6 -2.5475 3.8442 3.7882 17 7 -2.0027 5.0396 3.8697 18 14 -4.1990 3.6261 2.9432 19 1 -4.5909 2.1942 2.9843 20 1 -5.2246 4.4407 3.6431 21 1 -4.0944 4.0698 1.5299 22 6 0.3285 3.7070 3.8560 23 6 2.0827 -0.8022 -1.1989 24 7 2.2861 -2.1663 -0.6970 25 6 2.2967 -2.1956 0.6469 26 8 2.4533 -3.1930 1.3187 27 6 2.0842 -0.8034 1.1993 28 1 -0.3634 0.5409 -0.8738 29 1 -0.3633 -1.0272 -0.0315 30 1 -0.3633 0.4863 0.9053 31 1 1.2928 4.3033 0.8906 32 1 2.9966 3.9065 0.5018 33 1 2.3901 4.8550 2.9630 34 1 3.5434 3.4883 2.8124 35 1 1.2753 0.8847 2.5656 36 1 -0.0262 2.0121 2.0940 37 1 3.0351 1.5778 4.0902 38 1 2.5538 2.8679 5.2172 39 1 1.6842 0.6614 5.9543 40 1 0.8253 0.4853 4.4049 41 1 0.3726 2.6613 6.4988 42 1 -0.7387 1.3286 6.0934 43 1 -2.4591 5.8073 3.4913 44 1 0.6898 4.5065 4.5028 45 1 -0.2170 4.1357 3.0152 46 1 1.3614 -0.8046 -2.0161 47 1 3.0298 -0.3779 -1.5322 48 1 2.3985 -2.9464 -1.2624 49 1 3.0292 -0.3792 1.5386 50 1 1.3595 -0.8225 2.0132 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001040308080.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 18:55:12 Heat of formation + Delta-G solvation = -46.120494 kcal Electronic energy + Delta-G solvation = -31886.268856 eV Core-core repulsion = 27913.648282 eV Total energy + Delta-G solvation = -3972.620574 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 335.200 amu Computer time = 1.28 seconds Orbital eigenvalues (eV) -41.24536 -39.77846 -38.46020 -36.51751 -35.75471 -33.34267 -33.00704 -31.30321 -30.11393 -28.85293 -28.64298 -26.55182 -25.83770 -25.39587 -23.84206 -22.34828 -21.58750 -20.93951 -20.26623 -18.94660 -18.22145 -17.64544 -16.85999 -16.67022 -16.04294 -15.77096 -15.13034 -14.83411 -14.65916 -14.39759 -14.16365 -14.11137 -13.88064 -13.71158 -13.33152 -13.12154 -13.02145 -12.80751 -12.64818 -12.46626 -12.36706 -12.19052 -11.75724 -11.63279 -11.44470 -11.31599 -11.22657 -11.03521 -10.96320 -10.73861 -10.45651 -10.35886 -10.23466 -10.19309 -9.90864 -9.68667 -9.50711 -9.46984 -9.27717 -8.57412 -8.46739 -6.75189 -5.89108 -3.31118 2.42528 2.59354 2.94028 3.23383 3.29363 3.39335 3.39852 3.98962 4.14523 4.40729 4.45640 4.60532 4.78665 4.86881 5.06753 5.12449 5.27189 5.30880 5.32511 5.39928 5.46208 5.53736 5.55678 5.59897 5.62012 5.66839 5.72347 5.78661 5.88607 5.98748 6.06010 6.09377 6.14723 6.25249 6.29137 6.35667 6.43162 6.53723 6.56467 6.62402 6.75021 6.78100 6.81627 6.92559 7.19039 7.49101 7.68575 7.72723 8.05673 8.16394 8.35054 9.11714 9.74871 10.32796 11.19531 Molecular weight = 335.20amu Principal moments of inertia in cm(-1) A = 0.011608 B = 0.004429 C = 0.004279 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2411.523035 B = 6320.234028 C = 6541.498818 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.144 4.144 2 C -0.090 4.090 3 C 0.549 3.451 4 O -0.549 6.549 5 N -0.611 5.611 6 C 0.106 3.894 7 C -0.124 4.124 8 C -0.093 4.093 9 C 0.110 3.890 10 C -0.095 4.095 11 C -0.138 4.138 12 C 0.143 3.857 13 N -0.590 5.590 14 C -0.253 4.253 15 H 0.066 0.934 16 C 0.007 3.993 17 N -0.899 5.899 18 Si 0.895 3.105 19 H -0.277 1.277 20 H -0.290 1.290 21 H -0.289 1.289 22 C 0.189 3.811 23 C 0.120 3.880 24 N -0.730 5.730 25 C 0.525 3.475 26 O -0.533 6.533 27 C -0.146 4.146 28 H 0.068 0.932 29 H 0.069 0.931 30 H 0.081 0.919 31 H 0.076 0.924 32 H 0.078 0.922 33 H 0.084 0.916 34 H 0.066 0.934 35 H 0.072 0.928 36 H 0.087 0.913 37 H 0.046 0.954 38 H 0.059 0.941 39 H 0.052 0.948 40 H 0.058 0.942 41 H 0.017 0.983 42 H 0.053 0.947 43 H 0.253 0.747 44 H 0.023 0.977 45 H 0.087 0.913 46 H 0.087 0.913 47 H 0.091 0.909 48 H 0.411 0.589 49 H 0.108 0.892 50 H 0.116 0.884 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 8.600 -7.059 -6.838 13.060 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.201 4.201 2 C -0.093 4.093 3 C 0.336 3.664 4 O -0.428 6.428 5 N -0.343 5.343 6 C -0.016 4.016 7 C -0.162 4.162 8 C -0.096 4.096 9 C -0.012 4.012 10 C -0.133 4.133 11 C -0.177 4.177 12 C 0.017 3.983 13 N -0.313 5.313 14 C -0.383 4.383 15 H 0.084 0.916 16 C -0.192 4.192 17 N -0.543 5.543 18 Si 0.724 3.276 19 H -0.202 1.202 20 H -0.217 1.217 21 H -0.216 1.216 22 C 0.063 3.937 23 C -0.004 4.004 24 N -0.386 5.386 25 C 0.311 3.689 26 O -0.410 6.410 27 C -0.187 4.187 28 H 0.087 0.913 29 H 0.088 0.912 30 H 0.100 0.900 31 H 0.094 0.906 32 H 0.096 0.904 33 H 0.102 0.898 34 H 0.085 0.915 35 H 0.091 0.909 36 H 0.105 0.895 37 H 0.065 0.935 38 H 0.078 0.922 39 H 0.070 0.930 40 H 0.076 0.924 41 H 0.035 0.965 42 H 0.072 0.928 43 H 0.064 0.936 44 H 0.041 0.959 45 H 0.105 0.895 46 H 0.105 0.895 47 H 0.109 0.891 48 H 0.250 0.750 49 H 0.126 0.874 50 H 0.134 0.866 Dipole moment (debyes) X Y Z Total from point charges 8.941 -7.182 -7.007 13.439 hybrid contribution -0.913 -0.180 -0.655 1.138 sum 8.028 -7.362 -7.662 13.317 Atomic orbital electron populations 1.21930 0.90410 1.03327 1.04458 1.21591 0.98521 0.92835 0.96379 1.19489 0.79865 0.85811 0.81188 1.90677 1.39269 1.77010 1.35853 1.48867 1.55202 1.11209 1.18989 1.22515 1.00724 0.81154 0.97162 1.22725 0.98723 1.00922 0.93879 1.21850 0.97796 0.95806 0.94124 1.22541 0.97208 0.99141 0.82279 1.21382 0.96829 0.98006 0.97059 1.22091 0.97759 0.98176 0.99677 1.20917 0.93500 0.93303 0.90561 1.44061 1.04635 1.48412 1.34166 1.19185 0.84854 0.96013 1.38228 0.91629 1.25022 0.97522 0.94787 1.01911 1.70032 1.39453 0.97709 1.47140 0.86348 0.84123 0.77725 0.79369 1.20184 1.21685 1.21554 1.20749 0.87273 0.89601 0.96124 1.22031 1.02611 0.80492 0.95303 1.46218 1.74316 1.10437 1.07671 1.20756 0.74892 0.90637 0.82609 1.90763 1.50148 1.37232 1.62842 1.22556 1.04518 0.93096 0.98491 0.91257 0.91227 0.89993 0.90553 0.90361 0.89782 0.91514 0.90939 0.89456 0.93508 0.92211 0.92967 0.92378 0.96477 0.92847 0.93642 0.95941 0.89510 0.89507 0.89115 0.75011 0.87403 0.86604 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.59 8.32 37.16 0.31 -1.28 16 2 C -0.09 -1.03 0.62 -154.03 -0.09 -1.12 16 3 C 0.55 7.77 6.57 -10.99 -0.07 7.70 16 4 O -0.55 -9.09 15.76 5.56 0.09 -9.00 16 5 N -0.61 -8.78 3.29 -169.79 -0.56 -9.33 16 6 C 0.11 1.51 7.11 -2.02 -0.01 1.49 16 7 C -0.12 -1.70 6.15 -25.04 -0.15 -1.85 16 8 C -0.09 -1.46 0.62 -154.05 -0.09 -1.56 16 9 C 0.11 1.65 4.00 -3.14 -0.01 1.64 16 10 C -0.09 -1.38 4.43 -26.92 -0.12 -1.50 16 11 C -0.14 -2.10 5.87 -26.57 -0.16 -2.26 16 12 C 0.14 2.71 6.50 -3.72 -0.02 2.68 16 13 N -0.59 -13.02 2.79 -172.57 -0.48 -13.50 16 14 C -0.25 -6.28 9.58 -15.06 -0.14 -6.42 16 15 H 0.07 1.63 7.89 -52.49 -0.41 1.21 16 16 C 0.01 0.17 4.89 -17.43 -0.09 0.09 16 17 N -0.90 -24.15 11.30 55.49 0.63 -23.52 16 18 Si 0.89 20.32 29.59 -169.99 -5.03 15.29 16 19 H -0.28 -6.16 7.11 56.52 0.40 -5.75 16 20 H -0.29 -6.76 7.11 56.52 0.40 -6.36 16 21 H -0.29 -6.61 7.11 56.52 0.40 -6.21 16 22 C 0.19 3.86 3.60 -3.93 -0.01 3.85 16 23 C 0.12 1.18 6.66 -3.12 -0.02 1.16 16 24 N -0.73 -7.18 6.24 -59.20 -0.37 -7.55 16 25 C 0.52 6.71 8.43 -10.86 -0.09 6.62 16 26 O -0.53 -8.83 18.03 5.56 0.10 -8.73 16 27 C -0.15 -1.70 4.51 -26.74 -0.12 -1.82 16 28 H 0.07 0.74 8.14 -51.93 -0.42 0.32 16 29 H 0.07 0.70 8.14 -51.93 -0.42 0.27 16 30 H 0.08 1.02 5.68 -51.93 -0.30 0.73 16 31 H 0.08 1.13 8.14 -51.93 -0.42 0.71 16 32 H 0.08 1.07 7.83 -51.93 -0.41 0.66 16 33 H 0.08 1.15 7.79 -51.93 -0.40 0.74 16 34 H 0.07 0.84 7.84 -51.93 -0.41 0.44 16 35 H 0.07 1.00 3.34 -51.93 -0.17 0.83 16 36 H 0.09 1.55 6.68 -51.93 -0.35 1.20 16 37 H 0.05 0.62 8.14 -51.93 -0.42 0.19 16 38 H 0.06 0.88 8.14 -51.93 -0.42 0.46 16 39 H 0.05 0.70 8.14 -51.93 -0.42 0.28 16 40 H 0.06 0.89 6.59 -51.93 -0.34 0.54 16 41 H 0.02 0.34 8.14 -51.93 -0.42 -0.09 16 42 H 0.05 1.01 7.93 -51.93 -0.41 0.59 16 43 H 0.25 6.66 8.31 -40.82 -0.34 6.32 16 44 H 0.02 0.50 8.09 -51.93 -0.42 0.08 16 45 H 0.09 2.02 6.16 -51.93 -0.32 1.70 16 46 H 0.09 0.70 7.91 -51.93 -0.41 0.29 16 47 H 0.09 0.97 7.04 -51.93 -0.37 0.61 16 48 H 0.41 3.21 8.96 -40.82 -0.37 2.84 16 49 H 0.11 1.25 7.89 -51.93 -0.41 0.84 16 50 H 0.12 1.34 6.51 -51.93 -0.34 1.00 16 LS Contribution 375.60 15.07 5.66 5.66 Total: -1.00 -30.02 375.60 -8.80 -38.82 By element: Atomic # 1 Polarization: 12.39 SS G_CDS: -7.93 Total: 4.47 kcal Atomic # 6 Polarization: 8.31 SS G_CDS: -0.91 Total: 7.40 kcal Atomic # 7 Polarization: -53.12 SS G_CDS: -0.78 Total: -53.91 kcal Atomic # 8 Polarization: -17.92 SS G_CDS: 0.19 Total: -17.73 kcal Atomic # 14 Polarization: 20.32 SS G_CDS: -5.03 Total: 15.29 kcal Total LS contribution 5.66 Total: 5.66 kcal Total: -30.02 -8.80 -38.82 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001040308080.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -7.302 kcal (2) G-P(sol) polarization free energy of solvation -30.019 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -37.321 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.800 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.818 kcal (6) G-S(sol) free energy of system = (1) + (5) -46.120 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.28 seconds