Wall clock time and date at job start Tue Mar 31 2020 18:55:10 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 C 1.50697 * 110.85578 * 2 1 4 4 O 1.21280 * 119.99993 * 241.24252 * 3 2 1 5 5 N 1.34777 * 120.00209 * 61.24654 * 3 2 1 6 6 C 1.48206 * 127.05422 * 184.56364 * 5 3 2 7 7 C 1.55050 * 103.34076 * 219.04058 * 6 5 3 8 8 C 1.54157 * 102.72963 * 323.03021 * 7 6 5 9 9 C 1.47610 * 127.02184 * 4.64533 * 5 3 2 10 10 C 1.52497 * 110.05655 * 140.61055 * 8 7 6 11 11 C 1.53135 * 109.60498 * 181.73085 * 10 8 7 12 12 C 1.53177 * 109.29358 * 299.49633 * 11 10 8 13 13 N 1.46929 * 108.89599 * 55.06706 * 12 11 10 14 14 C 1.36938 * 120.68234 * 125.95471 * 13 12 11 15 15 H 1.07996 * 120.00502 * 331.30935 * 14 13 12 16 16 C 1.38816 * 119.99816 * 151.31170 * 14 13 12 17 17 N 1.31617 * 120.00066 * 342.38720 * 16 14 13 18 18 Si 1.86796 * 120.00033 * 162.38588 * 16 14 13 19 19 H 1.48509 * 109.47191 * 359.97438 * 18 16 14 20 20 H 1.48496 * 109.47173 * 119.99648 * 18 16 14 21 21 H 1.48503 * 109.47161 * 239.99922 * 18 16 14 22 22 C 1.47035 * 118.63640 * 305.97874 * 13 12 11 23 23 C 1.54481 * 110.96559 * 236.21256 * 2 1 3 24 24 N 1.46766 * 105.47372 * 267.25617 * 23 2 1 25 25 C 1.34419 * 111.30007 * 342.99144 * 24 23 2 26 26 O 1.21276 * 124.94251 * 180.37033 * 25 24 23 27 27 C 1.51283 * 110.11628 * 0.39985 * 25 24 23 28 28 H 1.09000 * 109.47233 * 58.23925 * 1 2 3 29 29 H 1.08998 * 109.47075 * 178.24106 * 1 2 3 30 30 H 1.09000 * 109.47196 * 298.24404 * 1 2 3 31 31 H 1.08996 * 110.62253 * 100.58794 * 6 5 3 32 32 H 1.09001 * 110.80041 * 337.57617 * 6 5 3 33 33 H 1.09000 * 110.76278 * 204.72046 * 7 6 5 34 34 H 1.08994 * 110.75798 * 81.33339 * 7 6 5 35 35 H 1.08998 * 109.97799 * 35.23207 * 9 5 3 36 36 H 1.09003 * 109.97248 * 273.99704 * 9 5 3 37 37 H 1.08993 * 109.44630 * 301.77476 * 10 8 7 38 38 H 1.08995 * 109.44656 * 61.69451 * 10 8 7 39 39 H 1.08995 * 109.50020 * 179.54862 * 11 10 8 40 40 H 1.08999 * 109.52723 * 59.45846 * 11 10 8 41 41 H 1.08994 * 109.56970 * 295.24116 * 12 11 10 42 42 H 1.09001 * 109.56764 * 174.89009 * 12 11 10 43 43 H 0.97003 * 119.99786 * 180.02562 * 17 16 14 44 44 H 1.09001 * 109.57845 * 292.99881 * 22 13 12 45 45 H 1.09003 * 109.70010 * 172.65622 * 22 13 12 46 46 H 1.09000 * 110.25147 * 26.26199 * 23 2 1 47 47 H 1.09000 * 110.24448 * 148.26033 * 23 2 1 48 48 H 0.97001 * 124.34665 * 163.00316 * 24 23 2 49 49 H 1.08995 * 110.48655 * 257.57914 * 27 25 24 50 50 H 1.08997 * 110.48301 * 134.93514 * 27 25 24 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0665 1.4082 0.0000 4 8 2.7546 1.7950 -0.9208 5 7 1.7818 2.2379 1.0233 6 6 2.1445 3.6702 1.1392 7 6 2.5217 3.8238 2.6352 8 6 1.5119 2.8943 3.3373 9 6 1.0460 1.9052 2.2589 10 6 2.1936 2.1500 4.4805 11 6 1.1932 1.1983 5.1427 12 6 0.0188 2.0075 5.7018 13 7 -0.5584 2.8176 4.6204 14 6 -1.8947 2.7455 4.3302 15 1 -2.4408 1.8339 4.5229 16 6 -2.5475 3.8442 3.7882 17 7 -2.0027 5.0396 3.8697 18 14 -4.1990 3.6261 2.9432 19 1 -4.5909 2.1942 2.9843 20 1 -5.2246 4.4407 3.6431 21 1 -4.0944 4.0698 1.5299 22 6 0.3285 3.7070 3.8560 23 6 2.0827 -0.8022 -1.1989 24 7 2.2861 -2.1663 -0.6970 25 6 2.2967 -2.1956 0.6469 26 8 2.4533 -3.1930 1.3187 27 6 2.0842 -0.8034 1.1993 28 1 -0.3634 0.5409 -0.8738 29 1 -0.3633 -1.0272 -0.0315 30 1 -0.3633 0.4863 0.9053 31 1 1.2928 4.3033 0.8906 32 1 2.9966 3.9065 0.5018 33 1 2.3901 4.8550 2.9630 34 1 3.5434 3.4883 2.8124 35 1 1.2753 0.8847 2.5656 36 1 -0.0262 2.0121 2.0940 37 1 3.0351 1.5778 4.0902 38 1 2.5538 2.8679 5.2172 39 1 1.6842 0.6614 5.9543 40 1 0.8253 0.4853 4.4049 41 1 0.3726 2.6613 6.4988 42 1 -0.7387 1.3286 6.0934 43 1 -2.4591 5.8073 3.4913 44 1 0.6898 4.5065 4.5028 45 1 -0.2170 4.1357 3.0152 46 1 1.3614 -0.8046 -2.0161 47 1 3.0298 -0.3779 -1.5322 48 1 2.3985 -2.9464 -1.2624 49 1 3.0292 -0.3792 1.5386 50 1 1.3595 -0.8225 2.0132 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001040308080.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 18:55:10 Heat of formation + Delta-G solvation = -65.704390 kcal Electronic energy + Delta-G solvation = -31887.118077 eV Core-core repulsion = 27913.648282 eV Total energy + Delta-G solvation = -3973.469796 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 335.200 amu Computer time = 1.24 seconds Orbital eigenvalues (eV) -42.28741 -40.95447 -39.69975 -37.60630 -37.15464 -34.84277 -34.15176 -32.64418 -31.74065 -30.10088 -29.57446 -27.52162 -27.27485 -26.93027 -25.04626 -23.88455 -22.80492 -21.94262 -21.51947 -20.09985 -19.56158 -18.72212 -18.49844 -17.69907 -17.15094 -17.02726 -16.55952 -16.13522 -15.78984 -15.70785 -15.55947 -15.30170 -15.15790 -14.87259 -14.49116 -14.42214 -14.26482 -14.14421 -13.90761 -13.64110 -13.49185 -13.29329 -13.01863 -12.90589 -12.85101 -12.62962 -12.53361 -12.39084 -12.35376 -12.25323 -12.03039 -11.79263 -11.74583 -11.36278 -11.29047 -10.96987 -10.95770 -10.73441 -10.48309 -10.17324 -9.68730 -8.58896 -7.82839 -5.25890 1.41944 1.45797 1.48879 1.50899 1.58249 1.86201 2.35235 2.53983 3.03934 3.18550 3.31629 3.46195 3.61352 3.67180 3.78322 3.88934 3.92093 4.00004 4.28940 4.34409 4.39503 4.41771 4.47278 4.53683 4.56057 4.65669 4.66364 4.72828 4.75271 4.81478 4.84475 4.94446 4.99712 5.04039 5.11292 5.17396 5.21056 5.24088 5.24885 5.36711 5.41366 5.55299 5.64913 5.70893 5.73098 5.81410 5.92915 6.44984 6.52869 7.00965 7.16153 7.21772 7.93178 8.45449 9.23250 Molecular weight = 335.20amu Principal moments of inertia in cm(-1) A = 0.011608 B = 0.004429 C = 0.004279 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2411.523035 B = 6320.234028 C = 6541.498818 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.141 4.141 2 C -0.085 4.085 3 C 0.550 3.450 4 O -0.571 6.571 5 N -0.610 5.610 6 C 0.105 3.895 7 C -0.115 4.115 8 C -0.088 4.088 9 C 0.124 3.876 10 C -0.091 4.091 11 C -0.128 4.128 12 C 0.138 3.862 13 N -0.605 5.605 14 C -0.250 4.250 15 H 0.065 0.935 16 C -0.041 4.041 17 N -0.930 5.930 18 Si 0.948 3.052 19 H -0.266 1.266 20 H -0.298 1.298 21 H -0.293 1.293 22 C 0.202 3.798 23 C 0.125 3.875 24 N -0.713 5.713 25 C 0.524 3.476 26 O -0.575 6.575 27 C -0.143 4.143 28 H 0.072 0.928 29 H 0.083 0.917 30 H 0.065 0.935 31 H 0.061 0.939 32 H 0.087 0.913 33 H 0.081 0.919 34 H 0.089 0.911 35 H 0.090 0.910 36 H 0.058 0.942 37 H 0.074 0.926 38 H 0.060 0.940 39 H 0.079 0.921 40 H 0.061 0.939 41 H 0.010 0.990 42 H 0.050 0.950 43 H 0.247 0.753 44 H -0.005 1.005 45 H 0.053 0.947 46 H 0.110 0.890 47 H 0.087 0.913 48 H 0.423 0.577 49 H 0.113 0.887 50 H 0.117 0.883 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 9.779 -8.859 -7.611 15.233 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.198 4.198 2 C -0.088 4.088 3 C 0.338 3.662 4 O -0.451 6.451 5 N -0.342 5.342 6 C -0.017 4.017 7 C -0.153 4.153 8 C -0.091 4.091 9 C 0.002 3.998 10 C -0.129 4.129 11 C -0.167 4.167 12 C 0.013 3.987 13 N -0.328 5.328 14 C -0.381 4.381 15 H 0.082 0.918 16 C -0.237 4.237 17 N -0.576 5.576 18 Si 0.778 3.222 19 H -0.190 1.190 20 H -0.226 1.226 21 H -0.219 1.219 22 C 0.076 3.924 23 C 0.001 3.999 24 N -0.369 5.369 25 C 0.311 3.689 26 O -0.455 6.455 27 C -0.183 4.183 28 H 0.091 0.909 29 H 0.102 0.898 30 H 0.084 0.916 31 H 0.080 0.920 32 H 0.105 0.895 33 H 0.099 0.901 34 H 0.108 0.892 35 H 0.108 0.892 36 H 0.076 0.924 37 H 0.093 0.907 38 H 0.078 0.922 39 H 0.097 0.903 40 H 0.079 0.921 41 H 0.028 0.972 42 H 0.068 0.932 43 H 0.057 0.943 44 H 0.013 0.987 45 H 0.071 0.929 46 H 0.128 0.872 47 H 0.105 0.895 48 H 0.264 0.736 49 H 0.131 0.869 50 H 0.135 0.865 Dipole moment (debyes) X Y Z Total from point charges 10.130 -9.005 -7.803 15.639 hybrid contribution -1.288 0.413 -0.393 1.408 sum 8.842 -8.592 -8.196 14.805 Atomic orbital electron populations 1.21908 0.90010 1.04079 1.03829 1.21553 0.98654 0.91280 0.97338 1.19897 0.79234 0.86585 0.80440 1.90671 1.40285 1.77707 1.36488 1.48895 1.55013 1.11306 1.18992 1.22499 1.00464 0.81082 0.97652 1.22681 0.99181 1.00416 0.93057 1.21658 0.96390 0.95958 0.95074 1.22280 0.95546 0.99682 0.82305 1.21379 0.97201 0.97973 0.96355 1.21980 0.96360 0.97786 1.00541 1.21068 0.94831 0.93065 0.89765 1.44298 1.04204 1.48829 1.35479 1.19427 0.86178 0.95599 1.36855 0.91772 1.25590 1.00236 0.94664 1.03191 1.70165 1.40653 0.98173 1.48654 0.85492 0.80891 0.77848 0.77997 1.19028 1.22575 1.21948 1.20470 0.88247 0.89466 0.94181 1.22058 1.03010 0.79790 0.95054 1.46133 1.72785 1.11028 1.06926 1.20860 0.74433 0.90344 0.83265 1.90747 1.52349 1.38504 1.63862 1.22526 1.04787 0.92485 0.98488 0.90882 0.89804 0.91627 0.92034 0.89505 0.90087 0.89249 0.89238 0.92401 0.90739 0.92150 0.90271 0.92068 0.97214 0.93187 0.94347 0.98734 0.92882 0.87150 0.89460 0.73628 0.86934 0.86473 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.84 8.32 71.98 0.60 -2.24 16 2 C -0.08 -1.74 0.62 -51.87 -0.03 -1.78 16 3 C 0.55 14.55 6.57 87.66 0.58 15.12 16 4 O -0.57 -17.85 15.76 -3.03 -0.05 -17.90 16 5 N -0.61 -16.74 3.29 -809.49 -2.66 -19.41 16 6 C 0.11 2.90 7.11 86.75 0.62 3.51 16 7 C -0.11 -3.00 6.15 31.69 0.19 -2.81 16 8 C -0.09 -2.69 0.62 -51.88 -0.03 -2.73 16 9 C 0.12 3.59 4.00 86.36 0.35 3.93 16 10 C -0.09 -2.42 4.43 30.47 0.13 -2.28 16 11 C -0.13 -3.58 5.87 30.70 0.18 -3.40 16 12 C 0.14 5.12 6.50 86.36 0.56 5.68 16 13 N -0.61 -27.00 2.79 -699.88 -1.95 -28.96 16 14 C -0.25 -12.57 9.58 84.03 0.80 -11.77 16 15 H 0.06 3.19 7.89 -2.91 -0.02 3.17 16 16 C -0.04 -2.13 4.89 84.86 0.42 -1.72 16 17 N -0.93 -51.77 11.30 21.65 0.24 -51.52 16 18 Si 0.95 42.54 29.59 68.60 2.03 44.57 16 19 H -0.27 -11.31 7.11 99.48 0.71 -10.61 16 20 H -0.30 -13.70 7.11 99.48 0.71 -12.99 16 21 H -0.29 -13.17 7.11 99.48 0.71 -12.46 16 22 C 0.20 8.48 3.60 86.16 0.31 8.79 16 23 C 0.13 2.09 6.66 86.83 0.58 2.67 16 24 N -0.71 -12.07 6.24 -459.80 -2.87 -14.94 16 25 C 0.52 12.26 8.43 87.90 0.74 13.00 16 26 O -0.57 -18.16 18.03 -3.02 -0.05 -18.21 16 27 C -0.14 -2.97 4.51 30.59 0.14 -2.83 16 28 H 0.07 1.42 8.14 -2.39 -0.02 1.40 16 29 H 0.08 1.46 8.14 -2.39 -0.02 1.44 16 30 H 0.06 1.57 5.68 -2.39 -0.01 1.55 16 31 H 0.06 1.87 8.14 -2.39 -0.02 1.85 16 32 H 0.09 2.26 7.83 -2.39 -0.02 2.24 16 33 H 0.08 2.19 7.79 -2.39 -0.02 2.17 16 34 H 0.09 1.98 7.84 -2.39 -0.02 1.97 16 35 H 0.09 2.28 3.34 -2.39 -0.01 2.28 16 36 H 0.06 2.06 6.68 -2.39 -0.02 2.05 16 37 H 0.07 1.64 8.14 -2.39 -0.02 1.62 16 38 H 0.06 1.62 8.14 -2.39 -0.02 1.60 16 39 H 0.08 1.84 8.14 -2.39 -0.02 1.82 16 40 H 0.06 1.70 6.59 -2.39 -0.02 1.68 16 41 H 0.01 0.38 8.14 -2.39 -0.02 0.36 16 42 H 0.05 1.85 7.93 -2.39 -0.02 1.83 16 43 H 0.25 13.51 8.31 -92.71 -0.77 12.74 16 44 H -0.01 -0.25 8.09 -2.39 -0.02 -0.27 16 45 H 0.05 2.58 6.16 -2.39 -0.01 2.57 16 46 H 0.11 1.39 7.91 -2.39 -0.02 1.37 16 47 H 0.09 1.62 7.04 -2.39 -0.02 1.60 16 48 H 0.42 5.42 8.96 -92.71 -0.83 4.59 16 49 H 0.11 2.27 7.89 -2.39 -0.02 2.25 16 50 H 0.12 2.43 6.51 -2.39 -0.02 2.41 16 Total: -1.00 -65.94 375.60 0.94 -65.00 By element: Atomic # 1 Polarization: 20.11 SS G_CDS: 0.13 Total: 20.23 kcal Atomic # 6 Polarization: 15.01 SS G_CDS: 6.13 Total: 21.14 kcal Atomic # 7 Polarization: -107.59 SS G_CDS: -7.24 Total: -114.83 kcal Atomic # 8 Polarization: -36.01 SS G_CDS: -0.10 Total: -36.11 kcal Atomic # 14 Polarization: 42.54 SS G_CDS: 2.03 Total: 44.57 kcal Total: -65.94 0.94 -65.00 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001040308080.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -0.707 kcal (2) G-P(sol) polarization free energy of solvation -65.941 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -66.648 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.944 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -64.998 kcal (6) G-S(sol) free energy of system = (1) + (5) -65.704 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.24 seconds