Wall clock time and date at job start Tue Mar 31 2020 18:55:16 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52996 * 1 3 3 C 1.50701 * 110.85713 * 2 1 4 4 O 1.21282 * 119.99726 * 239.30067 * 3 2 1 5 5 N 1.34769 * 120.00313 * 59.29464 * 3 2 1 6 6 C 1.48169 * 127.02712 * 0.03172 * 5 3 2 7 7 C 1.55038 * 103.31563 * 140.95234 * 6 5 3 8 8 C 1.54160 * 102.73387 * 36.99306 * 7 6 5 9 9 C 1.47609 * 127.02733 * 179.97438 * 5 3 2 10 10 C 1.52493 * 110.05270 * 97.46785 * 8 7 6 11 11 C 1.53126 * 109.58068 * 181.71911 * 10 8 7 12 12 C 1.53192 * 109.29232 * 299.49721 * 11 10 8 13 13 N 1.46927 * 108.88810 * 55.06964 * 12 11 10 14 14 C 1.36934 * 120.67741 * 125.96197 * 13 12 11 15 15 H 1.08001 * 120.00420 * 332.05163 * 14 13 12 16 16 C 1.38815 * 120.00263 * 152.05005 * 14 13 12 17 17 N 1.31618 * 119.99756 * 343.23375 * 16 14 13 18 18 Si 1.86795 * 120.00101 * 163.22652 * 16 14 13 19 19 H 1.48499 * 109.47327 * 359.97438 * 18 16 14 20 20 H 1.48502 * 109.47291 * 120.00444 * 18 16 14 21 21 H 1.48505 * 109.47439 * 240.00030 * 18 16 14 22 22 C 1.47033 * 118.64555 * 305.98154 * 13 12 11 23 23 C 1.54487 * 110.96963 * 123.78929 * 2 1 3 24 24 N 1.46818 * 105.44772 * 92.76515 * 23 2 1 25 25 C 1.34422 * 111.31322 * 16.96530 * 24 23 2 26 26 O 1.21285 * 124.93994 * 179.58880 * 25 24 23 27 27 C 1.51284 * 110.11901 * 359.62148 * 25 24 23 28 28 H 1.08993 * 109.47523 * 60.70305 * 1 2 3 29 29 H 1.09003 * 109.47112 * 180.70576 * 1 2 3 30 30 H 1.09004 * 109.47111 * 300.70474 * 1 2 3 31 31 H 1.08999 * 110.64748 * 259.41432 * 6 5 3 32 32 H 1.08998 * 110.64886 * 22.32886 * 6 5 3 33 33 H 1.08997 * 110.76092 * 278.67929 * 7 6 5 34 34 H 1.09000 * 110.76200 * 155.30293 * 7 6 5 35 35 H 1.09000 * 109.97048 * 86.02370 * 9 5 3 36 36 H 1.09003 * 110.00492 * 324.77135 * 9 5 3 37 37 H 1.09005 * 109.44632 * 61.69311 * 10 8 7 38 38 H 1.08997 * 109.44933 * 301.75114 * 10 8 7 39 39 H 1.09003 * 109.50349 * 59.44490 * 11 10 8 40 40 H 1.09003 * 109.50109 * 179.55688 * 11 10 8 41 41 H 1.08996 * 109.56822 * 174.88930 * 12 11 10 42 42 H 1.09001 * 109.56872 * 295.25073 * 12 11 10 43 43 H 0.97004 * 119.99717 * 179.97438 * 17 16 14 44 44 H 1.08998 * 109.58448 * 172.57209 * 22 13 12 45 45 H 1.08991 * 109.58397 * 292.85564 * 22 13 12 46 46 H 1.09001 * 110.24233 * 211.74537 * 23 2 1 47 47 H 1.09006 * 110.24025 * 333.73544 * 23 2 1 48 48 H 0.96995 * 124.33471 * 196.99705 * 24 23 2 49 49 H 1.08990 * 110.48575 * 225.07066 * 27 25 24 50 50 H 1.09005 * 110.59490 * 102.47724 * 27 25 24 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0665 1.4083 0.0000 4 8 2.7835 1.7840 -0.9032 5 7 1.7496 2.2502 1.0035 6 6 0.8933 1.9577 2.1768 7 6 1.6164 2.6879 3.3375 8 6 2.1365 3.9713 2.6600 9 6 2.1854 3.6519 1.1589 10 6 1.1787 5.1278 2.9256 11 6 1.6829 6.3857 2.2127 12 6 3.0702 6.7504 2.7503 13 7 3.9576 5.5886 2.6039 14 6 5.1543 5.7017 1.9480 15 1 5.2772 6.4434 1.1727 16 6 6.2096 4.8631 2.2797 17 7 6.1900 4.1983 3.4155 18 14 7.6575 4.6781 1.1140 19 1 7.4384 5.5251 -0.0859 20 1 8.9034 5.1041 1.8006 21 1 7.7815 3.2572 0.7003 22 6 3.5342 4.3018 3.1757 23 6 2.0828 -0.8023 1.1989 24 7 2.2865 -2.1665 0.6960 25 6 2.2963 -2.1954 -0.6479 26 8 2.4537 -3.1926 -1.3201 27 6 2.0833 -0.8031 -1.1999 28 1 -0.3634 0.5028 -0.8961 29 1 -0.3633 -1.0276 0.0127 30 1 -0.3633 0.5248 0.8836 31 1 -0.1083 2.3628 2.0322 32 1 0.8492 0.8845 2.3625 33 1 2.4442 2.0879 3.7154 34 1 0.9166 2.9298 4.1374 35 1 1.5113 4.3138 0.6155 36 1 3.2030 3.7695 0.7862 37 1 1.1248 5.3153 3.9980 38 1 0.1875 4.8713 2.5518 39 1 1.7461 6.1961 1.1412 40 1 0.9932 7.2095 2.3970 41 1 3.4721 7.5904 2.1837 42 1 2.9941 7.0212 3.8034 43 1 6.9273 3.6120 3.6470 44 1 4.2303 3.5202 2.8714 45 1 3.5174 4.3731 4.2631 46 1 3.0299 -0.3778 1.5321 47 1 1.3614 -0.8045 2.0160 48 1 2.3991 -2.9468 1.2610 49 1 1.3581 -0.8221 -2.0133 50 1 3.0270 -0.3774 -1.5412 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001040308081.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 18:55:16 Heat of formation + Delta-G solvation = -43.720003 kcal Electronic energy + Delta-G solvation = -31427.656322 eV Core-core repulsion = 27455.139841 eV Total energy + Delta-G solvation = -3972.516481 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 335.200 amu Computer time = 1.26 seconds Orbital eigenvalues (eV) -41.24971 -39.81845 -38.39339 -36.54258 -35.88293 -33.28467 -32.81204 -31.43224 -30.00598 -29.15657 -28.47427 -26.85471 -25.84268 -25.32826 -23.58164 -22.25107 -21.92703 -20.79285 -20.46174 -19.06029 -18.18086 -17.42297 -16.82238 -16.66520 -16.12653 -15.68243 -15.30845 -14.89226 -14.86762 -14.35915 -14.19706 -14.03116 -13.90908 -13.58458 -13.44967 -13.18680 -12.99976 -12.76790 -12.61694 -12.59691 -12.29752 -12.26490 -11.97104 -11.63332 -11.44621 -11.36280 -11.17268 -10.98599 -10.93738 -10.69117 -10.42577 -10.33726 -10.16996 -10.09102 -9.86543 -9.69469 -9.52949 -9.44853 -9.36665 -8.54041 -8.43989 -6.70206 -5.82432 -3.23958 2.42602 2.62124 2.98721 3.15392 3.38565 3.47604 3.49699 3.96510 4.06270 4.38431 4.48827 4.54174 4.68767 4.75770 4.98989 5.02866 5.12954 5.21525 5.32526 5.35210 5.37950 5.43534 5.46600 5.48525 5.55105 5.59400 5.68868 5.74009 5.82692 5.94691 5.97924 6.05585 6.14869 6.21773 6.33910 6.35690 6.41457 6.53132 6.66379 6.70123 6.75084 6.77392 6.82824 6.95477 7.25277 7.56053 7.69828 7.78928 8.03973 8.24382 8.41357 9.18429 9.81600 10.37557 11.26199 Molecular weight = 335.20amu Principal moments of inertia in cm(-1) A = 0.011882 B = 0.004304 C = 0.003540 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2355.850259 B = 6504.734812 C = 7907.311698 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.141 4.141 2 C -0.092 4.092 3 C 0.544 3.456 4 O -0.529 6.529 5 N -0.612 5.612 6 C 0.094 3.906 7 C -0.125 4.125 8 C -0.093 4.093 9 C 0.126 3.874 10 C -0.093 4.093 11 C -0.139 4.139 12 C 0.144 3.856 13 N -0.591 5.591 14 C -0.250 4.250 15 H 0.066 0.934 16 C 0.006 3.994 17 N -0.903 5.903 18 Si 0.897 3.103 19 H -0.277 1.277 20 H -0.290 1.290 21 H -0.288 1.288 22 C 0.188 3.812 23 C 0.113 3.887 24 N -0.730 5.730 25 C 0.525 3.475 26 O -0.535 6.535 27 C -0.138 4.138 28 H 0.069 0.931 29 H 0.068 0.932 30 H 0.073 0.927 31 H 0.071 0.929 32 H 0.077 0.923 33 H 0.077 0.923 34 H 0.078 0.922 35 H 0.059 0.941 36 H 0.093 0.907 37 H 0.058 0.942 38 H 0.046 0.954 39 H 0.059 0.941 40 H 0.050 0.950 41 H 0.052 0.948 42 H 0.017 0.983 43 H 0.252 0.748 44 H 0.088 0.912 45 H 0.021 0.979 46 H 0.082 0.918 47 H 0.091 0.909 48 H 0.412 0.588 49 H 0.108 0.892 50 H 0.124 0.876 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -15.889 -7.065 0.734 17.405 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.198 4.198 2 C -0.096 4.096 3 C 0.330 3.670 4 O -0.405 6.405 5 N -0.346 5.346 6 C -0.029 4.029 7 C -0.164 4.164 8 C -0.096 4.096 9 C 0.004 3.996 10 C -0.131 4.131 11 C -0.178 4.178 12 C 0.018 3.982 13 N -0.313 5.313 14 C -0.380 4.380 15 H 0.084 0.916 16 C -0.193 4.193 17 N -0.548 5.548 18 Si 0.727 3.273 19 H -0.201 1.201 20 H -0.217 1.217 21 H -0.215 1.215 22 C 0.062 3.938 23 C -0.012 4.012 24 N -0.386 5.386 25 C 0.311 3.689 26 O -0.412 6.412 27 C -0.179 4.179 28 H 0.088 0.912 29 H 0.087 0.913 30 H 0.092 0.908 31 H 0.090 0.910 32 H 0.095 0.905 33 H 0.096 0.904 34 H 0.096 0.904 35 H 0.077 0.923 36 H 0.112 0.888 37 H 0.077 0.923 38 H 0.065 0.935 39 H 0.078 0.922 40 H 0.069 0.931 41 H 0.071 0.929 42 H 0.035 0.965 43 H 0.062 0.938 44 H 0.107 0.893 45 H 0.039 0.961 46 H 0.100 0.900 47 H 0.109 0.891 48 H 0.251 0.749 49 H 0.126 0.874 50 H 0.142 0.858 Dipole moment (debyes) X Y Z Total from point charges -15.248 -7.416 -0.222 16.957 hybrid contribution 0.799 -0.355 -0.065 0.876 sum -14.449 -7.770 -0.287 16.408 Atomic orbital electron populations 1.21940 0.90952 1.03165 1.03774 1.21646 0.98084 0.93120 0.96728 1.19491 0.80560 0.85540 0.81366 1.90747 1.37171 1.76949 1.35645 1.48844 1.49052 1.14059 1.22596 1.22781 0.94254 1.00225 0.85669 1.22750 1.00122 0.96973 0.96533 1.21827 1.00359 0.93687 0.93713 1.22170 1.01993 0.79123 0.96280 1.21376 0.96635 0.94949 1.00129 1.22083 0.98743 0.96582 1.00365 1.20908 0.89327 0.90946 0.97049 1.44063 1.18303 1.03506 1.65465 1.19203 0.88115 1.18612 1.12045 0.91641 1.24983 0.97147 1.01130 0.95993 1.70020 1.32275 1.31921 1.20563 0.86305 0.82452 0.77839 0.80738 1.20146 1.21748 1.21505 1.20747 0.88802 0.89622 0.94614 1.22215 1.02000 0.81465 0.95524 1.46202 1.74517 1.10117 1.07757 1.20864 0.74684 0.90812 0.82525 1.90755 1.50255 1.37405 1.62795 1.22388 1.05745 0.92039 0.97694 0.91177 0.91274 0.90783 0.91046 0.90525 0.90401 0.90378 0.92316 0.88841 0.92287 0.93501 0.92236 0.93094 0.92907 0.96528 0.93759 0.89338 0.96120 0.89956 0.89129 0.74943 0.87402 0.85817 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.11 8.23 37.16 0.31 -0.80 16 2 C -0.09 -0.98 0.60 -154.03 -0.09 -1.07 16 3 C 0.54 8.08 6.57 -10.99 -0.07 8.01 16 4 O -0.53 -10.27 15.88 5.56 0.09 -10.18 16 5 N -0.61 -8.58 3.29 -169.84 -0.56 -9.14 16 6 C 0.09 0.94 5.18 -2.05 -0.01 0.93 16 7 C -0.13 -1.52 6.15 -25.05 -0.15 -1.67 16 8 C -0.09 -1.48 0.61 -154.08 -0.09 -1.58 16 9 C 0.13 2.14 5.57 -3.15 -0.02 2.12 16 10 C -0.09 -1.33 4.40 -26.93 -0.12 -1.44 16 11 C -0.14 -2.18 5.87 -26.57 -0.16 -2.33 16 12 C 0.14 2.83 6.50 -3.71 -0.02 2.80 16 13 N -0.59 -13.84 2.76 -172.59 -0.48 -14.31 16 14 C -0.25 -6.65 9.59 -15.06 -0.14 -6.80 16 15 H 0.07 1.75 7.88 -52.49 -0.41 1.33 16 16 C 0.01 0.16 4.92 -17.43 -0.09 0.08 16 17 N -0.90 -25.39 11.19 55.49 0.62 -24.77 16 18 Si 0.90 21.99 29.59 -169.99 -5.03 16.96 16 19 H -0.28 -6.70 7.11 56.52 0.40 -6.30 16 20 H -0.29 -7.13 7.11 56.52 0.40 -6.73 16 21 H -0.29 -7.23 7.11 56.52 0.40 -6.83 16 22 C 0.19 4.04 3.58 -3.95 -0.01 4.02 16 23 C 0.11 1.03 5.90 -3.09 -0.02 1.02 16 24 N -0.73 -7.10 6.24 -59.16 -0.37 -7.47 16 25 C 0.52 6.74 8.43 -10.86 -0.09 6.64 16 26 O -0.54 -8.87 18.03 5.55 0.10 -8.77 16 27 C -0.14 -1.66 5.75 -26.74 -0.15 -1.81 16 28 H 0.07 0.57 8.14 -51.93 -0.42 0.15 16 29 H 0.07 0.48 8.14 -51.93 -0.42 0.05 16 30 H 0.07 0.49 5.35 -51.93 -0.28 0.21 16 31 H 0.07 0.61 8.00 -51.93 -0.42 0.19 16 32 H 0.08 0.57 4.34 -51.93 -0.23 0.35 16 33 H 0.08 1.03 7.84 -51.93 -0.41 0.62 16 34 H 0.08 0.79 7.83 -51.93 -0.41 0.39 16 35 H 0.06 0.97 6.54 -51.93 -0.34 0.63 16 36 H 0.09 2.05 7.52 -51.93 -0.39 1.66 16 37 H 0.06 0.83 8.14 -51.93 -0.42 0.41 16 38 H 0.05 0.57 8.14 -51.93 -0.42 0.15 16 39 H 0.06 0.98 6.65 -51.93 -0.35 0.64 16 40 H 0.05 0.69 8.14 -51.93 -0.42 0.26 16 41 H 0.05 1.04 7.93 -51.93 -0.41 0.63 16 42 H 0.02 0.33 8.14 -51.93 -0.42 -0.09 16 43 H 0.25 6.92 8.31 -40.82 -0.34 6.58 16 44 H 0.09 2.21 6.08 -51.93 -0.32 1.90 16 45 H 0.02 0.48 8.14 -51.93 -0.42 0.05 16 46 H 0.08 0.89 7.88 -51.93 -0.41 0.48 16 47 H 0.09 0.57 6.34 -51.93 -0.33 0.24 16 48 H 0.41 3.22 8.96 -40.82 -0.37 2.85 16 49 H 0.11 1.15 7.91 -51.93 -0.41 0.74 16 50 H 0.12 1.73 7.01 -51.93 -0.36 1.37 16 LS Contribution 375.56 15.07 5.66 5.66 Total: -1.00 -33.16 375.56 -8.83 -41.99 By element: Atomic # 1 Polarization: 9.85 SS G_CDS: -7.92 Total: 1.93 kcal Atomic # 6 Polarization: 9.05 SS G_CDS: -0.94 Total: 8.10 kcal Atomic # 7 Polarization: -54.91 SS G_CDS: -0.78 Total: -55.70 kcal Atomic # 8 Polarization: -19.14 SS G_CDS: 0.19 Total: -18.95 kcal Atomic # 14 Polarization: 21.99 SS G_CDS: -5.03 Total: 16.96 kcal Total LS contribution 5.66 Total: 5.66 kcal Total: -33.16 -8.83 -41.99 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001040308081.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -1.727 kcal (2) G-P(sol) polarization free energy of solvation -33.162 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -34.889 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.831 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.993 kcal (6) G-S(sol) free energy of system = (1) + (5) -43.720 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.26 seconds